CmoCh17G013080 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G013080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Far-red impaired responsive (FAR1) family protein
Location	Cmo_Chr17 : 10243746 .. 10247783 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACTTTGCTGCTTGGATCCTGAAACGTTTCTAATTTACCGAATCTTTGATGTTGTTCTATCTAAGTTCATGCCCTAATCTGGCCGCTAATTGAATTTTCCCACATGTCGACTCTTGGGGTTGATTAAAGAGTAGGGCAGATTGTTGAAACTAGGCTGCATTTTCATTGTTCTACATAGTTGATTGATGTTTGTAGTACTATCTAGTTGGAGAATTGCTATATACTTGAATTATTTCACTTAGGTTCTTGATACTGATTCAAAAGAATGGCAATGGTTCATGTTTCACTTAGGTTCTCTATTGATTGATGCTTTTCTGATTGTTTTTCTTTTCCTGCTGTTTGAAGGAATGAAGTTACCTGTCATCCAGGTACAGCAGTGTCGATTTTTTTTTGTTCTTGTTTGTGTAAACTTCTTTGTGCTTCACATCGTGAGTTGATGGAGTCAAACATGATCAAAAGCTTGTGTTGGGAAGTTTTCTTATCAATATGGCTTCTTTGAGATGAGTCCAATCATGGGATAAGATAGAAGAGTCGATTCTTTCTTATTTCCTTTTTTTAGTTTGAATGAATGGAGGATACCCGTGAGATCCCACATCGATTGGAGAGAGGACCAAGTGCCAACGAGAATGTTGGGCTCCAAAGGAGGTGGATTGTGAGATCCCACGTTGATGGGAGAGGGGAATGAATGTTAGCGAGGACGCTGGACTTTGAAAGGGGGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAACAAAACATTCTTTATAAGAGTGTGGAAACCTCTCCCTAGCAAACGTATTTTAACAACCTTGAAAGGAAGCCCAAAAGGGAAAGCCTAAAGAGGACAATATCTACTCGCGGTGGGCTTGGGTTGTTACAATATCTCGTGCTCAAATCATTGTTGCTTTATGCTTTTATTTATTTTTCAAAAGTTATATTTCCATATTTGACTTGATATTTGAAAAAGGGTACTTTGCAATCTGGAAGAGGTTACACTTGCTTTCAAATGTGGACAATATAATAAATACTGCAATTGGCCTAGATTGATTGAGAATCATAACTAATAAAGAAATTCGAGAGTGTACTGGTTATAATATCGTTTCCTGTACGCTTTAAACTCGTTTGCAATGTTAGTAATGTTGATGAACGTGTTGCAGTGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGTGAGTTATTCTGATTCTCTAACATATGTTCTATGCTTCATGTTTGACAAGAGGACTGTGTTGAATTAGATGCTGTGATACCATGCAAAAGGTTTCTTTGTTTCTTTGTTCATTGATTTTCTTTGAGTTAGAACATGTGGGGTGGGGTGAGGACGGGGAGGATTTGAGACCTCCCCTTACTCCTTAGGATCACTCACGACGTTTCATGCCAAGTCGGTTACCTTCAGAACCAACCCTTGTGACCGAATAACTCGATACTAAAATGAACATCCTTACTTTTACGATACGAGATAGAAGGATATATATCTAGGGGATTCGAGAGTTCTCCTTACTCCCCGTGATCGCTTACCAAAAGTCCATCTCTCTCCATATAGGAAGTGTGCTAAATAGTCATAGCCACTCACGACGTTCCATGCGAAAGTTGGTTCCTTTTGCAACCATCCCTCGTGCCCAAATAGCTCTAATAATAAACTGAACCTCTTTACTCTAACCGGGCATAGAGGGATATGTAACCAAGGGAAGATTTGAGAGTTCCCCATACTCCCCATGATCACTTACCAAAAGTTAGCCCTTCTCCGTACCGAAAGTACGCTAGACAGCTATAGCCACTAACAATGTTCCATGTCAAAGTAAGTTTGTGACGGTCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGTTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCATTTGCTAGGGAGAGGTTTCCATACCCTTATAAAGAATTCTTCGTTCTCCTCCCCAACCAACGTGGGATCTCACAATCCGCCTCCCTTCAGGACCCAGCATTCTCATTGGCACTTGTTCCTCTCTTTAATCAACATGGGATCTCACAAAGTTACTTTTGCAACCATCCCTTGCAACCGAATAGCTCTAAAGACTAAATTGAACATCTTTACTTTTACGGACAGGAAATGTAGGGAAACATGACTAAGGGAAGATTTGAGAGCTCCCCATACTCCCTATGATCACTAACCAAAAACACCACTCTCCACACCTGCTAAAACCTTTACTTGACTAACCCTCATTCAACCGCAGCTGATGTACATTTATAAGGCAGCTCCACTCCCTTCCATTAAATAGAGAGGTTTCTCCCAAATGTTTACCAAGAAATCGTACATTTTTTTATTGTTTAGACAAAAGTTATATGCACATTTTAGAACCAAGAGAAGATTTAAGTAAATAAATAAAGGAACAACCTGAGCTGCTCAACTGGTCTAAGGCATATAGGGGTGAACTTTTGGAAGGGATCTTGGAGAGTGAGGGGGAGCTCTCTAATCTTCCCCGGGATATGTATCCCTCTATTTCCTATCCATAAAAGATGAAGATGTTCTTTTTTTAATATTAGACGGTGATAGGGGATAGTTGTAACAGTCCGAGCCCCCACCACTAGTAGATATTGACCTCTTTGAGCTTTTTCTTCAAGGGCTTCCTCTTAAGGTTTTAAAATGCATTTACTAAGGAGATGTTTCCACACCCTTATAAGGAATGTTTCGTTACCCTCTCCAATCAACATGGGATCTTACAATCCACTCTCAGTGTCTTCGCTGGCACACCATCCGGTGTCTGTCTATGATATCATTTGGAACAGCCCAAACCCACTGCTAGCAGATATTGTCCACTTCGAGCTTATCTCACATCGATTGTGATGAGACAAATTTATCAATCTGGAATAGTAGTAAATGGATGGTTCTATCCTTATCTGATGTCATTGTGGTTGAGGAATTGCTACCTATATCATTGATCTTGGGGTCTGTCAAAGTTGATTGGACATGACTAATGGAATTTTGGGTAGAAGATTGGAGGACCCAAGTCTACAAGCTCTGGTATTACTCAAGTCTAACAAGCTGTAACTGGAAGTTCGTGGAAAATTATGGAATCATCGACTTTTCTTTAATCGTAGAACTTAAAAAGAAAGATTTTCAGTAGAACGAGACGAGCATAGAACACCCATCTAACAAAAATCTGGCATGACATCTACTTGAATTGTTGAGATTGCCAATTTTTTGCTTAGCCTGTGGTTGTAGAAATGCTTCAGGAATTGAAGTAGCGGTAGTACTCTCTACCCACTGCATAAAGCTGGTTACGAATGTGTGTGATTAATGTTGCTTTAAGTATGCAGACATGAATCTACTTCCTTTATGTATTATATTTCAAGTTCTTGGTATATTTAAGAACTGAATTGACATCGACACTGACGCTTGCAGGGCGATAAAGATAAGAAGATCGAGGAACTTAAAACGGAGTTGGAGCATCAGGAGCAACTATGCATAGCTTATAGGGAAAAGCTTTTCAATTTTATCTCCAAGGTGGAAGAACAAACAGAAGAACTGTCTTCAAAAATACAAGTGATCATCAGCAATCTCAGGCAAGTTGAATCTGGAATACAAAAACATTATCCATGTCGTCGTCCACAATAG

mRNA sequence

ATGGTTCTTGATACTGATTCAAAAGAATGGCAATGGTTCATGTTTCACTTAGTGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGGCGATAAAGATAAGAAGATCGAGGAACTTAAAACGGAGTTGGAGCATCAGGAGCAACTATGCATAGCTTATAGGGAAAAGCTTTTCAATTTTATCTCCAAGGTGGAAGAACAAACAGAAGAACTGTCTTCAAAAATACAAGTGATCATCAGCAATCTCAGGCAAGTTGAATCTGGAATACAAAAACATTATCCATGTCGTCGTCCACAATAG

Coding sequence (CDS)

ATGGTTCTTGATACTGATTCAAAAGAATGGCAATGGTTCATGTTTCACTTAGTGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGGCGATAAAGATAAGAAGATCGAGGAACTTAAAACGGAGTTGGAGCATCAGGAGCAACTATGCATAGCTTATAGGGAAAAGCTTTTCAATTTTATCTCCAAGGTGGAAGAACAAACAGAAGAACTGTCTTCAAAAATACAAGTGATCATCAGCAATCTCAGGCAAGTTGAATCTGGAATACAAAAACATTATCCATGTCGTCGTCCACAATAG

Homology

[Close]

BLAST of CmoCh17G013080 vs. Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.9e-22
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 44  LEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGF-SPN 103
           LEPY G+EF+SE+AA+ FY  YAR++GF  R+   RRS  DG  + R+  C K+GF + N
Sbjct: 71  LEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMN 130

Query: 104 HRGIYGLD-KKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 150
            +     + K+ R   R GCKA++ VKM+ SGKW+V+ FVKDHNH LV
Sbjct: 131 EKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178

[Close]

BLAST of CmoCh17G013080 vs. Swiss-Prot
Match: FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-16
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 39  EGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQG 98
           EG   +EPYVG+EFD+ + AR+FY  YA + GF VR  Q  RS  DG   +RR  C+K+G
Sbjct: 36  EGGSGVEPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEG 95

Query: 99  FSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL 149
           F  N              +R GC A I V+   +GKWV+ +  K+HNH L
Sbjct: 96  FQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131

[Close]

BLAST of CmoCh17G013080 vs. Swiss-Prot
Match: FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-16
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 39  EGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQG 98
           EG+  LEPYVG+EFD+ + AR +Y  YA + GF VR  Q  RS  DG   +RR  C+K+G
Sbjct: 21  EGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEG 80

Query: 99  FSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL 149
           F  N              +R GC A I V+   +GKWV+ +  K+HNH L
Sbjct: 81  FQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDL 116

[Close]

BLAST of CmoCh17G013080 vs. Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-14
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 1


Query: 40  GNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGF 99
           G++ LEP  G++FD+ +AA  FY EYA+ MGF   I   RRS      +  +  C++ G 
Sbjct: 45  GDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGV 104

Query: 100 SPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 150
           +P      G   +     +  CKA++ VK    GKW++  FVKDHNH L+
Sbjct: 105 TPESES-SGSSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHELL 153

[Close]

BLAST of CmoCh17G013080 vs. Swiss-Prot
Match: FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 6.5e-13
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 1


Query: 43  ILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPN 102
           I EP VGMEF+SE  A+ FY EY+RQ+GF  +++ R     DG    R   C+       
Sbjct: 46  IAEPCVGMEFNSEKEAKSFYDEYSRQLGFTSKLLPR----TDGSVSVREFVCSSS----- 105

Query: 103 HRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL 149
                   K+S+    E C A + ++++   KWVVT+FVK+H H L
Sbjct: 106 -------SKRSKRRLSESCDAMVRIELQGHEKWVVTKFVKEHTHGL 135

[Close]

BLAST of CmoCh17G013080 vs. TrEMBL
Match: A0A0A0K5G0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375750 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 4.4e-109
Identity = 195/209 (93.30%), Postives = 204/209 (97.61%), Query Frame = 1


Query: 18  VNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 77
           +NLDDGSGPAHN+IEVN HAA+GN++LEPYVGMEFDSEDAAR+FYAEYARQMGFVVRIMQ
Sbjct: 517 MNLDDGSGPAHNSIEVNTHAADGNLVLEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 576

Query: 78  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 137
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 577 RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 636

Query: 138 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEEQT 197
           TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELK ELEHQEQLCIAYREKLFNFIS VEEQT
Sbjct: 637 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKMELEHQEQLCIAYREKLFNFISNVEEQT 696

Query: 198 EELSSKIQVIISNLRQVESGIQKHYPCRR 227
           EELSSKIQVII N+RQVESG+QKHY CR+
Sbjct: 697 EELSSKIQVIIGNVRQVESGMQKHYQCRQ 725

[Close]

BLAST of CmoCh17G013080 vs. TrEMBL
Match: A0A061DUS5_THECC (Far-red impaired responsive family protein isoform 2 OS=Theobroma cacao GN=TCM_002653 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.1e-79
Identity = 151/203 (74.38%), Postives = 172/203 (84.73%), Query Frame = 1


Query: 18  VNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 77
           V+LD   G   ++ E      EG  ILEPYVGMEF+SED ARKFY EYARQ+GFVVRIMQ
Sbjct: 10  VDLDKEVGTVDSSEEKTAEP-EGREILEPYVGMEFESEDDARKFYVEYARQVGFVVRIMQ 69

Query: 78  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 137
           RRRSGIDGRTLARRLGCNKQGFSPNH+G +G DKK RPSAREGCKATILVKMEK+GKWVV
Sbjct: 70  RRRSGIDGRTLARRLGCNKQGFSPNHKGTFGPDKKPRPSAREGCKATILVKMEKTGKWVV 129

Query: 138 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEEQT 197
           TRFVK+HNHPL+  +NGF+++GDKDKKIEEL  EL HQEQLC AYREKLF F++ VEEQT
Sbjct: 130 TRFVKEHNHPLIATANGFSTTGDKDKKIEELSMELAHQEQLCSAYREKLFTFMNNVEEQT 189

Query: 198 EELSSKIQVIISNLRQVESGIQK 221
           EELSSKIQVI+ N+R++ES  Q+
Sbjct: 190 EELSSKIQVIVDNVRKLESETQR 211

[Close]

BLAST of CmoCh17G013080 vs. TrEMBL
Match: A0A061DMU8_THECC (Far-red impaired responsive family protein isoform 1 OS=Theobroma cacao GN=TCM_002653 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.8e-79
Identity = 146/182 (80.22%), Postives = 164/182 (90.11%), Query Frame = 1


Query: 39  EGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQG 98
           EG  ILEPYVGMEF+SED ARKFY EYARQ+GFVVRIMQRRRSGIDGRTLARRLGCNKQG
Sbjct: 91  EGREILEPYVGMEFESEDDARKFYVEYARQVGFVVRIMQRRRSGIDGRTLARRLGCNKQG 150

Query: 99  FSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCSNGFNSS 158
           FSPNH+G +G DKK RPSAREGCKATILVKMEK+GKWVVTRFVK+HNHPL+  +NGF+++
Sbjct: 151 FSPNHKGTFGPDKKPRPSAREGCKATILVKMEKTGKWVVTRFVKEHNHPLIATANGFSTT 210

Query: 159 GDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEEQTEELSSKIQVIISNLRQVESGI 218
           GDKDKKIEEL  EL HQEQLC AYREKLF F++ VEEQTEELSSKIQVI+ N+R++ES  
Sbjct: 211 GDKDKKIEELSMELAHQEQLCSAYREKLFTFMNNVEEQTEELSSKIQVIVDNVRKLESET 270

Query: 219 QK 221
           Q+
Sbjct: 271 QR 272

[Close]

BLAST of CmoCh17G013080 vs. TrEMBL
Match: A0A067LA34_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15097 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 6.2e-79
Identity = 151/203 (74.38%), Postives = 171/203 (84.24%), Query Frame = 1


Query: 18  VNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 77
           ++LD   G    ++E    + EG+ +LEPYVGMEFDSEDAARKFY EYAR++GFVVRIMQ
Sbjct: 1   MDLDKEVGAVDISVEEKNVSVEGDGVLEPYVGMEFDSEDAARKFYIEYARRIGFVVRIMQ 60

Query: 78  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 137
           RRRSGIDGRTLARRLGCNKQGFSP HR   G DKK R SAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPKHRSTIGPDKKPRSSAREGCKATILVKMEKSGKWVV 120

Query: 138 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEEQT 197
           TRF KDHNHPLVV +NGF+++GDKDKKIEEL  ELE QEQLC  YREKL +F++ VEEQT
Sbjct: 121 TRFEKDHNHPLVVTANGFSTAGDKDKKIEELTKELERQEQLCAVYREKLLSFMNNVEEQT 180

Query: 198 EELSSKIQVIISNLRQVESGIQK 221
           EELSSKIQVI+ N+R+VES +QK
Sbjct: 181 EELSSKIQVIVDNVRKVESEVQK 203

[Close]

BLAST of CmoCh17G013080 vs. TrEMBL
Match: A0A0B0MT75_GOSAR (Far1-related sequence 5-like protein OS=Gossypium arboreum GN=F383_27616 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.1e-78
Identity = 147/205 (71.71%), Postives = 174/205 (84.88%), Query Frame = 1


Query: 16  HLVNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRI 75
           H  +LD   G A +++E      EG+ ILEPYVGMEF+SED A+KFY EYAR++GFVVRI
Sbjct: 10  HSWDLDKEGGKADSSVEEKTAEPEGSEILEPYVGMEFESEDDAKKFYIEYARRIGFVVRI 69

Query: 76  MQRRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKW 135
           MQRRRSGIDGRTLARRLGCNKQGFSPNH+G  G +KK RPSAREGCKATILVKMEK+GKW
Sbjct: 70  MQRRRSGIDGRTLARRLGCNKQGFSPNHKGTLGQEKKPRPSAREGCKATILVKMEKTGKW 129

Query: 136 VVTRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEE 195
           VVTRF K+HNHPL++ +NGFN++GDKDKKIEEL  EL HQEQLC AYREKLF FI+ VE+
Sbjct: 130 VVTRFEKEHNHPLMITTNGFNTTGDKDKKIEELTMELAHQEQLCSAYREKLFAFINNVEK 189

Query: 196 QTEELSSKIQVIISNLRQVESGIQK 221
           QTEELSSKI+VI+ N+R++E+  Q+
Sbjct: 190 QTEELSSKIEVIVDNVRKLEAQRQR 214

[Close]

BLAST of CmoCh17G013080 vs. TAIR10
Match: AT4G12850.1 (AT4G12850.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-55
Identity = 105/176 (59.66%), Postives = 140/176 (79.55%), Query Frame = 1


Query: 45  EPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHR 104
           EPYVG++F+SE+ A+ FY EY++++GFVVR+MQRRRSGIDGRTLARRLGCNKQGF PN++
Sbjct: 9   EPYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFGPNNQ 68

Query: 105 GIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL-VVCSNGFNSSGDKDK 164
                   S  S+REGCKATILVKMEKSGKWVVTRF+K+HNH L  + S+ ++S  DK++
Sbjct: 69  ----RSSSSSSSSREGCKATILVKMEKSGKWVVTRFIKEHNHSLQFIGSSSYDSFADKER 128

Query: 165 KIEELKTELEHQEQLCIAYREKLFNFISKVEEQTEELSSKIQVIISNLRQVESGIQ 220
           KI+EL  E+E Q++LC  YR++L +FI  VE  TEELS K++ I+ N++++E  IQ
Sbjct: 129 KIKELTEEIECQDRLCDVYRDRLVSFIDNVEHYTEELSLKVRDIVENVKKLECQIQ 180

[Close]

BLAST of CmoCh17G013080 vs. TAIR10
Match: AT2G43280.1 (AT2G43280.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-45
Identity = 87/173 (50.29%), Postives = 128/173 (73.99%), Query Frame = 1


Query: 44  LEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNH 103
           +EP  G+ F+SEDAA+ FY +Y+R++GFV+R+M  RRS  DGR LARR GCNK+G   + 
Sbjct: 20  IEPREGIIFESEDAAKMFYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSI 79

Query: 104 RGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVC-SNGFNSSGDKD 163
           RG +G  +K RPS REGCKA I VK ++SGKWV+T+FVK+HNHPLVV      ++  +KD
Sbjct: 80  RGKFGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLVVSPREARHTLDEKD 139

Query: 164 KKIEELKTELEHQEQLCIAYREKLFNFISKVEEQTEELSSKIQVIISNLRQVE 216
           K+I+EL  EL ++++LC AY+E+L  F   VEE + +++ K++ +++NL++ E
Sbjct: 140 KRIQELTIELRNKKRLCAAYKEQLDAFAKIVEEHSNQIAKKVENVVNNLKEFE 192

[Close]

BLAST of CmoCh17G013080 vs. TAIR10
Match: AT3G07500.1 (AT3G07500.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 145.2 bits (365), Expect = 4.9e-35
Identity = 79/185 (42.70%), Postives = 113/185 (61.08%), Query Frame = 1


Query: 39  EGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQG 98
           E + ++EP++GMEF+SE+AA+ FY  YA  MGFV+R+   RRS  DG  + RRL CNK+G
Sbjct: 26  EASPMVEPFIGMEFESEEAAKSFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEG 85

Query: 99  FSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCSNGF--- 158
           F    R      +K R   REGCKA I+VK EKSG W+VT+F K+HNHPL+  S      
Sbjct: 86  FR-RSRPRRSESRKPRAITREGCKALIVVKREKSGTWLVTKFEKEHNHPLLPLSPNVRRN 145

Query: 159 ----NSSGDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEEQTEELSSKIQVIISNL 217
                +  +KD KI EL  EL  + + C A +++L   + ++EE +  L+  I  +I ++
Sbjct: 146 FQLPQTPDEKDAKIRELSAELSRERRRCTALQQQLDMVLKEMEEHSNHLTININSVIQSV 205

[Close]

BLAST of CmoCh17G013080 vs. TAIR10
Match: AT3G59470.1 (AT3G59470.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 128.6 bits (322), Expect = 4.8e-30
Identity = 73/178 (41.01%), Postives = 108/178 (60.67%), Query Frame = 1


Query: 45  EPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFS-PNH 104
           EPYVG EF+SE AA  FY  YA ++GFV+R+ +  RS  DG  + R+L CNK+G+  P+ 
Sbjct: 69  EPYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSK 128

Query: 105 RGIYGLDK--KSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVV--CSNG--FNS 164
           R     DK  + R   R GCKA IL++ E SGKWV+T+FVK+HNH L+      G  ++ 
Sbjct: 129 R-----DKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLMPGRVRRGCIYDQ 188

Query: 165 SGDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEEQTEELSSKIQVIISNLRQVE 216
             ++  KI+EL  +L  +++    Y+  L     ++E+  E LS +IQ I+ N+R +E
Sbjct: 189 YPNEHDKIQELMQQLAAEKKRAATYKRHLEMLFEQIEQHNESLSKRIQHIVDNVRNLE 241

[Close]

BLAST of CmoCh17G013080 vs. TAIR10
Match: AT4G38180.1 (AT4G38180.1 FAR1-related sequence 5)

HSP 1 Score: 105.9 bits (263), Expect = 3.3e-23
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 44  LEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGF-SPN 103
           LEPY G+EF+SE+AA+ FY  YAR++GF  R+   RRS  DG  + R+  C K+GF + N
Sbjct: 71  LEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMN 130

Query: 104 HRGIYGLD-KKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 150
            +     + K+ R   R GCKA++ VKM+ SGKW+V+ FVKDHNH LV
Sbjct: 131 EKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178

[Close]

BLAST of CmoCh17G013080 vs. NCBI nr
Match: gi|449462447|ref|XP_004148952.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus])

HSP 1 Score: 402.1 bits (1032), Expect = 6.3e-109
Identity = 195/209 (93.30%), Postives = 204/209 (97.61%), Query Frame = 1


Query: 18  VNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 77
           +NLDDGSGPAHN+IEVN HAA+GN++LEPYVGMEFDSEDAAR+FYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNSIEVNTHAADGNLVLEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 60

Query: 78  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 137
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 138 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEEQT 197
           TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELK ELEHQEQLCIAYREKLFNFIS VEEQT
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKMELEHQEQLCIAYREKLFNFISNVEEQT 180

Query: 198 EELSSKIQVIISNLRQVESGIQKHYPCRR 227
           EELSSKIQVII N+RQVESG+QKHY CR+
Sbjct: 181 EELSSKIQVIIGNVRQVESGMQKHYQCRQ 209

[Close]

BLAST of CmoCh17G013080 vs. NCBI nr
Match: gi|700189500|gb|KGN44733.1| (hypothetical protein Csa_7G375750 [Cucumis sativus])

HSP 1 Score: 402.1 bits (1032), Expect = 6.3e-109
Identity = 195/209 (93.30%), Postives = 204/209 (97.61%), Query Frame = 1


Query: 18  VNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 77
           +NLDDGSGPAHN+IEVN HAA+GN++LEPYVGMEFDSEDAAR+FYAEYARQMGFVVRIMQ
Sbjct: 517 MNLDDGSGPAHNSIEVNTHAADGNLVLEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 576

Query: 78  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 137
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 577 RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 636

Query: 138 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEEQT 197
           TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELK ELEHQEQLCIAYREKLFNFIS VEEQT
Sbjct: 637 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKMELEHQEQLCIAYREKLFNFISNVEEQT 696

Query: 198 EELSSKIQVIISNLRQVESGIQKHYPCRR 227
           EELSSKIQVII N+RQVESG+QKHY CR+
Sbjct: 697 EELSSKIQVIIGNVRQVESGMQKHYQCRQ 725

[Close]

BLAST of CmoCh17G013080 vs. NCBI nr
Match: gi|659100746|ref|XP_008451247.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Cucumis melo])

HSP 1 Score: 395.2 bits (1014), Expect = 7.7e-107
Identity = 192/209 (91.87%), Postives = 202/209 (96.65%), Query Frame = 1


Query: 18  VNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 77
           +NLDDGSGPAHN++EVN  AA+GNV+ EPYVGMEFDSEDAAR+FYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNSVEVNTDAADGNVVSEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 60

Query: 78  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 137
           RRRSGIDGRTLARRLGCNKQGFSP+HRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPSHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 138 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEEQT 197
           TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELK ELEHQEQLCIAYREKLFNFIS VEEQT
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKMELEHQEQLCIAYREKLFNFISNVEEQT 180

Query: 198 EELSSKIQVIISNLRQVESGIQKHYPCRR 227
           EELSSKIQVII N+RQVESG+QKHY CR+
Sbjct: 181 EELSSKIQVIIGNVRQVESGMQKHYQCRQ 209

[Close]

BLAST of CmoCh17G013080 vs. NCBI nr
Match: gi|590713168|ref|XP_007049566.1| (Far-red impaired responsive family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 303.5 bits (776), Expect = 3.1e-79
Identity = 151/203 (74.38%), Postives = 172/203 (84.73%), Query Frame = 1


Query: 18  VNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 77
           V+LD   G   ++ E      EG  ILEPYVGMEF+SED ARKFY EYARQ+GFVVRIMQ
Sbjct: 10  VDLDKEVGTVDSSEEKTAEP-EGREILEPYVGMEFESEDDARKFYVEYARQVGFVVRIMQ 69

Query: 78  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 137
           RRRSGIDGRTLARRLGCNKQGFSPNH+G +G DKK RPSAREGCKATILVKMEK+GKWVV
Sbjct: 70  RRRSGIDGRTLARRLGCNKQGFSPNHKGTFGPDKKPRPSAREGCKATILVKMEKTGKWVV 129

Query: 138 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEEQT 197
           TRFVK+HNHPL+  +NGF+++GDKDKKIEEL  EL HQEQLC AYREKLF F++ VEEQT
Sbjct: 130 TRFVKEHNHPLIATANGFSTTGDKDKKIEELSMELAHQEQLCSAYREKLFTFMNNVEEQT 189

Query: 198 EELSSKIQVIISNLRQVESGIQK 221
           EELSSKIQVI+ N+R++ES  Q+
Sbjct: 190 EELSSKIQVIVDNVRKLESETQR 211

[Close]

BLAST of CmoCh17G013080 vs. NCBI nr
Match: gi|590713165|ref|XP_007049565.1| (Far-red impaired responsive family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 302.4 bits (773), Expect = 6.8e-79
Identity = 146/182 (80.22%), Postives = 164/182 (90.11%), Query Frame = 1


Query: 39  EGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQG 98
           EG  ILEPYVGMEF+SED ARKFY EYARQ+GFVVRIMQRRRSGIDGRTLARRLGCNKQG
Sbjct: 91  EGREILEPYVGMEFESEDDARKFYVEYARQVGFVVRIMQRRRSGIDGRTLARRLGCNKQG 150

Query: 99  FSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCSNGFNSS 158
           FSPNH+G +G DKK RPSAREGCKATILVKMEK+GKWVVTRFVK+HNHPL+  +NGF+++
Sbjct: 151 FSPNHKGTFGPDKKPRPSAREGCKATILVKMEKTGKWVVTRFVKEHNHPLIATANGFSTT 210

Query: 159 GDKDKKIEELKTELEHQEQLCIAYREKLFNFISKVEEQTEELSSKIQVIISNLRQVESGI 218
           GDKDKKIEEL  EL HQEQLC AYREKLF F++ VEEQTEELSSKIQVI+ N+R++ES  
Sbjct: 211 GDKDKKIEELSMELAHQEQLCSAYREKLFTFMNNVEEQTEELSSKIQVIVDNVRKLESET 270

Query: 219 QK 221
           Q+
Sbjct: 271 QR 272

The following BLAST results are available for this feature:

BLAST of CmoCh17G013080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FRS5_ARATH	5.9e-22	50.00	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1	[more]
FRS12_ARATH	2.2e-16	42.73	Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1	[more]
FRS7_ARATH	2.2e-16	42.73	Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1	[more]
FAR1_ARATH	1.5e-14	37.27	Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1	[more]
FRS3_ARATH	6.5e-13	37.74	Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2	[more]

BLAST of CmoCh17G013080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5G0_CUCSA	4.4e-109	93.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375750 PE=3 SV=1	[more]
A0A061DUS5_THECC	2.1e-79	74.38	Far-red impaired responsive family protein isoform 2 OS=Theobroma cacao GN=TCM_0...	[more]
A0A061DMU8_THECC	4.8e-79	80.22	Far-red impaired responsive family protein isoform 1 OS=Theobroma cacao GN=TCM_0...	[more]
A0A067LA34_JATCU	6.2e-79	74.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15097 PE=4 SV=1	[more]
A0A0B0MT75_GOSAR	1.1e-78	71.71	Far1-related sequence 5-like protein OS=Gossypium arboreum GN=F383_27616 PE=4 SV...	[more]

BLAST of CmoCh17G013080 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12850.1	1.1e-55	59.66	Far-red impaired responsive (FAR1) family protein	[more]
AT2G43280.1	1.1e-45	50.29	Far-red impaired responsive (FAR1) family protein	[more]
AT3G07500.1	4.9e-35	42.70	Far-red impaired responsive (FAR1) family protein	[more]
AT3G59470.1	4.8e-30	41.01	Far-red impaired responsive (FAR1) family protein	[more]
AT4G38180.1	3.3e-23	50.00	FAR1-related sequence 5	[more]

BLAST of CmoCh17G013080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462447\|ref\|XP_004148952.1\|	6.3e-109	93.30	PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus]	[more]
gi\|700189500\|gb\|KGN44733.1\|	6.3e-109	93.30	hypothetical protein Csa_7G375750 [Cucumis sativus]	[more]
gi\|659100746\|ref\|XP_008451247.1\|	7.7e-107	91.87	PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Cucumis melo]	[more]
gi\|590713168\|ref\|XP_007049566.1\|	3.1e-79	74.38	Far-red impaired responsive family protein isoform 2 [Theobroma cacao]	[more]
gi\|590713165\|ref\|XP_007049565.1\|	6.8e-79	80.22	Far-red impaired responsive family protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004330	FAR1_DNA_bnd_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004650	polygalacturonase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G013080.1	CmoCh17G013080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 60..149 score: 7.2
None	No IPR available	unknown	Coil	Coil	coord: 165..185 scor
None	No IPR available	PANTHER	PTHR31669:SF44	FAR-RED IMPAIRED RESPONSIVE 1-LIKE PROTEIN	coord: 34..220 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G013080	Cucsa.388460	Cucumber (Gy14) v1	cgycmoB1076
CmoCh17G013080	CmaCh17G013450	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G013080	CmaCh08G002910	Cucurbita maxima (Rimu)	cmacmoB888
CmoCh17G013080	Csa7G375750	Cucumber (Chinese Long) v2	cmocuB374
CmoCh17G013080	ClCG09G007820	Watermelon (Charleston Gray)	cmowcgB302
CmoCh17G013080	CSPI07G15540	Wild cucumber (PI 183967)	cmocpiB377
CmoCh17G013080	Lsi02G022070	Bottle gourd (USVL1VR-Ls)	cmolsiB334
CmoCh17G013080	Cp4.1LG12g10410	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G013080	Cp4.1LG17g06030	Cucurbita pepo (Zucchini)	cmocpeB355
CmoCh17G013080	MELO3C029191.2	Melon (DHL92) v3.6.1	cmomedB360
CmoCh17G013080	CsaV3_7G027310	Cucumber (Chinese Long) v3	cmocucB0450
CmoCh17G013080	Bhi09G000972	Wax gourd	cmowgoB0492
CmoCh17G013080	CsGy7G014040	Cucumber (Gy14) v2	cgybcmoB903
CmoCh17G013080	Carg11519	Silver-seed gourd	carcmoB0021
CmoCh17G013080	Carg05114	Silver-seed gourd	carcmoB0112

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh17G013080	CmoCh08G002880	Cucurbita moschata (Rifu)	cmocmoB311

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G013080	Melon (DHL92) v3.5.1	cmomeB315
CmoCh17G013080	Watermelon (97103) v1	cmowmB325
CmoCh17G013080	Watermelon (97103) v2	cmowmbB373