Carg11519-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCTTCCTTTCTTTTGAAGTTCGTGGAATATGCTAGTGGTCGATCCAATTGTTGAATCCCAGTAGTGGAACCATCCACAAGATCTTCAGCAAAATCATACCAACTTTTGTAATTTCAAGACCAGTTCCTTTTGACAAAATCTGTTGCTTATACTTCAAAATTAGTTCTCGCCGTCAAAAACCCACTTCTCCAATCGATCCAATACCATAACCATCTAAACAAAAAATTCAGGGTTCTCACAGTTCATCGGCAAGATTCTACGCCGTTGCATCTCTTCATCGTTTCAATGAGCGAAGGGGAAGAGATTTCAGTGAAAATCCACAGAACCCGACTCCCGTTTTGAGCCCAAGTTCACTTCAAACTTCAAGTATTTGCTCAGTTCAGTAGCGCGTCATCAGTTTTCTTCATTTAATCTTCGATTTGTGTGTAAAGCGCTGTCGACGGATTAGGAGTGTTTCTATTCAGTGAGTAATCATAATTCTGTTTTTGGGGTTTCGTTTTGTCATTCATTCTATGGTACTTTGCTGCTTGGATCCTGAAACGTTTCTAATTTACCGAATCTTTGATGTTGTTCTATCTAAGTTCATGCCCTAATCTGGCTGCTAATTGAATTTTCCCACATGTCGACTCTTGGGGTTGATTAAAGAGTAGGGCAGATTGTTGAAACTAGGCTGCATTTTCATTGTTCTACATAGTTGATTGATGTTTGTAGTACTATCTAGTTGGAGAATTGCTATATACTTGAATTATTTCACTTAGGTTCTTGATACTGATTCAAAAGAATGGCAATGGTTCATGTTTCACTTAGGTTCTCTATTGATTGATGCTGTTCTGATTGTTTTTCTTTTCCTGCTGTTTGAAGGAATGAAGTTACCTGTCATCCAGGTACAGCAGTGTCGATTTTGTTAATCCATTTTTTTGTTCTTGTTTGTGTAAACTTCTTTGTGCTTCACATCGTGAGTTGATGGAGTCAAACATGATCAAAAGCTTGTGTTGGGGAGTTTTCTTATCAATATGGCTTCTTTGAGATGAGTCCAATCATGGGATAAGATAGAAGAGTCGATTCTTTCTTATTTCCTTTTTTTAGTTTGAATGAATGGAGGATACCCGTGAGATCCCACATCGATTGGAGAGAGGAACAAGTGCCAACGAGAACGTTGGGCTCCGAAGGGGTGGATTGTGAGATCCCACGTTGATGAGAGAGGGGAACGAGTGTCAGCAAGAATGCTGGACCTTGAAAGGGGGTGGATTGTGAGATCTCACATCAGTTGGAGAGGGGAACAAGACTTTCTTTATAAGAGTGTGAAAACCTCTCCCTAGCAAACGCATTTTAACAACCTTGAAAGGAAGCCCGAAAGGGAAAGCCTAAAGAGGACAATATCTACTAGCGGTGGGCTTGGGTTGTTACAATATCTCATACTCAAATCATTGTTCCTTTATGCTTTTATTTATTTTTCAAAAGTTATATTTCCATATTTAACTTGATATTGGAAAAAGGGTACTTTGCAATCTGGAAGAGGTTACACTTGCTTTCAAATATGGACAATATAATAAATACTGCAATTGGCCTAGATTGATTGAGAATCATAACTAGTAAAGAAATTCGAGAGTGTACTGGTTATAATATCGTTTCCTATACGCTTTAAACTCGTTTGCAATGTTAGTAATGTTGATGAACGTGTTGCAGTGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGTGAGTTATTCTGATTCTCTAACATATGTTCTATGCTTCATGTTTGACAAGAGGACTGTGTTGAATTAGATGCTGTGATACCATGCAAAAGGTTTCTTTGTTTCTTTGTTCATTGATTTTTTTTGAGTTAGAACATGTGGGGTGGGGTGAGGACTCAAATCTTTGACCTCATACTATCGAGGGGAGGATTTGAGACCTCCCCTTACTCCCTAGGATCACTCACGACGTTTCATGCCAAGTCGGTTACCTTTAGAACCAACCCTTGTGACCGAATAACTCGATACTAAAATGAACATCCTTACTTTTACGATACGAGATAGAAGGATATGTATCTAGGGGAGATTCGAGAGTTCTCCTTACTCCCCGTGATCGCTTACCAAAAGTCCATCTCTCTCCATATAGGAAGTGTGCTAAATAGTCATAGCCACTCACGACGTTCCATGCGAAAGTCGGTTCCTTTTGCAACCATCCCTTGTGCCCAAATAGCTCTAATAATAAACTGAACCTCTTTACTCTAACCGGGCATAGAGGGATATGTAACCAAGGGAAGATTTGAGAGTTCCCCATACTCCCCATGATCACTTACCAAAAGTTAGCCCTTCTCCGTACCGAAAGTACGCTAGACAGCTATAGCCACTAACAATGTTCCATGTCAAAGTAAGTTTGTTTGTGACGGTC TCCTTCCTTTCTTTTGAAGTTCGTGGAATATGCTAGTGGTCGATCCAATTGTTGAATCCCAGTAGTGGAACCATCCACAAGATCTTCAGCAAAATCATACCAACTTTTGTAATTTCAAGACCAGTTCCTTTTGACAAAATCTGTTGCTTATACTTCAAAATTAGTTCTCGCCGTCAAAAACCCACTTCTCCAATCGATCCAATACCATAACCATCTAAACAAAAAATTCAGGGTTCTCACAGTTCATCGGCAAGATTCTACGCCGTTGCATCTCTTCATCGTTTCAATGAGCGAAGGGGAAGAGATTTCAGTGAAAATCCACAGAACCCGACTCCCGTTTTGAGCCCAAGTTCACTTCAAACTTCAAGTATTTGCTCAGTTCAGTAGCGCGTCATCAGTTTTCTTCATTTAATCTTCGATTTGTGTGTAAAGCGCTGTCGACGGATTAGGAGTGTTTCTATTCATGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGTGAGTTATTCTGATTCTCTAACATATGTTCTATGCTTCATGTTTGACAAGAGGACTGTGTTGAATTAGATGCTGTGATACCATGCAAAAGGTTTCTTTGTTTCTTTGTTCATTGATTTTTTTTGAGTTAGAACATGTGGGGTGGGGTGAGGACTCAAATCTTTGACCTCATACTATCGAGGGGAGGATTTGAGACCTCCCCTTACTCCCTAGGATCACTCACGACGTTTCATGCCAAGTCGGTTACCTTTAGAACCAACCCTTGTGACCGAATAACTCGATACTAAAATGAACATCCTTACTTTTACGATACGAGATAGAAGGATATGTATCTAGGGGAGATTCGAGAGTTCTCCTTACTCCCCGTGATCGCTTACCAAAAGTCCATCTCTCTCCATATAGGAAGTGTGCTAAATAGTCATAGCCACTCACGACGTTCCATGCGAAAGTCGGTTCCTTTTGCAACCATCCCTTGTGCCCAAATAGCTCTAATAATAAACTGAACCTCTTTACTCTAACCGGGCATAGAGGGATATGTAACCAAGGGAAGATTTGAGAGTTCCCCATACTCCCCATGATCACTTACCAAAAGTTAGCCCTTCTCCGTACCGAAAGTACGCTAGACAGCTATAGCCACTAACAATGTTCCATGTCAAAGTAAGTTTGTTTGTGACGGTC ATGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGTGAGTTATTCTGATTCTCTAACATATGTTCTATGCTTCATGTTTGACAAGAGGACTGTGTTGAATTAG MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCSNGFNSSVSYSDSLTYVLCFMFDKRTVLN
BLAST of Carg11519-RA vs. NCBI nr
Match: XP_022953365.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita moschata] >XP_022953366.1 protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 291.6 bits (745), Expect = 1.7e-75 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
BLAST of Carg11519-RA vs. NCBI nr
Match: XP_022991543.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita maxima] >XP_022991544.1 protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 291.6 bits (745), Expect = 1.7e-75 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
BLAST of Carg11519-RA vs. NCBI nr
Match: XP_023548849.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 291.6 bits (745), Expect = 1.7e-75 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
BLAST of Carg11519-RA vs. NCBI nr
Match: XP_004148952.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus]) HSP 1 Score: 284.6 bits (727), Expect = 2.0e-73 Identity = 135/141 (95.74%), Postives = 140/141 (99.29%), Query Frame = 0
BLAST of Carg11519-RA vs. NCBI nr
Match: KGN44733.1 (hypothetical protein Csa_7G375750 [Cucumis sativus]) HSP 1 Score: 284.6 bits (727), Expect = 2.0e-73 Identity = 135/141 (95.74%), Postives = 140/141 (99.29%), Query Frame = 0
BLAST of Carg11519-RA vs. TAIR10
Match: AT4G12850.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 152.5 bits (384), Expect = 2.2e-37 Identity = 76/119 (63.87%), Postives = 93/119 (78.15%), Query Frame = 0
BLAST of Carg11519-RA vs. TAIR10
Match: AT2G43280.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 139.8 bits (351), Expect = 1.5e-33 Identity = 65/107 (60.75%), Postives = 84/107 (78.50%), Query Frame = 0
BLAST of Carg11519-RA vs. TAIR10
Match: AT3G07500.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 117.9 bits (294), Expect = 6.0e-27 Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 0
BLAST of Carg11519-RA vs. TAIR10
Match: AT3G59470.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 107.1 bits (266), Expect = 1.1e-23 Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 0
BLAST of Carg11519-RA vs. TAIR10
Match: AT4G38180.1 (FAR1-related sequence 5) HSP 1 Score: 105.9 bits (263), Expect = 2.4e-23 Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 0
BLAST of Carg11519-RA vs. Swiss-Prot
Match: sp|Q9SZL8|FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 4.3e-22 Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 0
BLAST of Carg11519-RA vs. Swiss-Prot
Match: sp|Q3E7I5|FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16 Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 0
BLAST of Carg11519-RA vs. Swiss-Prot
Match: sp|Q9M8J3|FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16 Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 0
BLAST of Carg11519-RA vs. Swiss-Prot
Match: sp|Q9SWG3|FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14 Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 0
BLAST of Carg11519-RA vs. Swiss-Prot
Match: sp|Q3EBQ3|FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 4.7e-13 Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 0
BLAST of Carg11519-RA vs. TrEMBL
Match: tr|A0A0A0K5G0|A0A0A0K5G0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375750 PE=3 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 1.4e-73 Identity = 135/141 (95.74%), Postives = 140/141 (99.29%), Query Frame = 0
BLAST of Carg11519-RA vs. TrEMBL
Match: tr|A0A1S3BS39|A0A1S3BS39_CUCME (protein FAR1-RELATED SEQUENCE 5 OS=Cucumis melo OX=3656 GN=LOC103492594 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 1.7e-71 Identity = 132/141 (93.62%), Postives = 138/141 (97.87%), Query Frame = 0
BLAST of Carg11519-RA vs. TrEMBL
Match: tr|A0A2N9HYE4|A0A2N9HYE4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45274 PE=4 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 2.6e-56 Identity = 108/141 (76.60%), Postives = 124/141 (87.94%), Query Frame = 0
BLAST of Carg11519-RA vs. TrEMBL
Match: tr|A0A2I4EFP4|A0A2I4EFP4_9ROSI (protein FAR1-RELATED SEQUENCE 7-like OS=Juglans regia OX=51240 GN=LOC108989158 PE=4 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 4.8e-55 Identity = 106/141 (75.18%), Postives = 122/141 (86.52%), Query Frame = 0
BLAST of Carg11519-RA vs. TrEMBL
Match: tr|A0A2P4IMT8|A0A2P4IMT8_QUESU (Protein far1-related sequence 5 OS=Quercus suber OX=58331 GN=CFP56_29429 PE=4 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 9.1e-54 Identity = 105/141 (74.47%), Postives = 122/141 (86.52%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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