Carg10561 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10561
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_098 : 856287 .. 856697 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAGACTCGTCGGAGGAGGTACTGGTTGCGGCGCAGCTATTGATGCAGCTGAGCATCGAGGATGACGACGACGACGACAACTGTGGTAGCAATGTCGTTGTGGCGGCGGAGAACAAGAAGAACAAGAAGCTGAAAAAGGGTCACGGCGGCGACCGCGGTGACGGTGGGGAGGAGGAGGAGGTTGATCAGAAGAGATACCAAATTGAGACGTCAATTTGGTTGAAAATCGAAGAGATTTTCGGGAAAGATGATGAAGAAGAAGATTTCAATTCCATTTGTCGGCCTAAGAAGAGACGATTTCGATCCCTCCAAAGCATATATATCACCACCAAACCCATCGGTAATGGTAGATTCCCGGCAAGGGGATCGTCAGAACTTGAACACGGCGGCGATGGCGGTGGCTAA

mRNA sequence

ATGGGAGAAGACTCGTCGGAGGAGGTACTGGTTGCGGCGCAGCTATTGATGCAGCTGAGCATCGAGGATGACGACGACGACGACAACTGTGGTAGCAATGTCGTTGTGGCGGCGGAGAACAAGAAGAACAAGAAGCTGAAAAAGGGTCACGGCGGCGACCGCGGTGACGGTGGGGAGGAGGAGGAGGTTGATCAGAAGAGATACCAAATTGAGACGTCAATTTGGTTGAAAATCGAAGAGATTTTCGGGAAAGATGATGAAGAAGAAGATTTCAATTCCATTTGTCGGCCTAAGAAGAGACGATTTCGATCCCTCCAAAGCATATATATCACCACCAAACCCATCGGTAATGGTAGATTCCCGGCAAGGGGATCGTCAGAACTTGAACACGGCGGCGATGGCGGTGGCTAA

Coding sequence (CDS)

ATGGGAGAAGACTCGTCGGAGGAGGTACTGGTTGCGGCGCAGCTATTGATGCAGCTGAGCATCGAGGATGACGACGACGACGACAACTGTGGTAGCAATGTCGTTGTGGCGGCGGAGAACAAGAAGAACAAGAAGCTGAAAAAGGGTCACGGCGGCGACCGCGGTGACGGTGGGGAGGAGGAGGAGGTTGATCAGAAGAGATACCAAATTGAGACGTCAATTTGGTTGAAAATCGAAGAGATTTTCGGGAAAGATGATGAAGAAGAAGATTTCAATTCCATTTGTCGGCCTAAGAAGAGACGATTTCGATCCCTCCAAAGCATATATATCACCACCAAACCCATCGGTAATGGTAGATTCCCGGCAAGGGGATCGTCAGAACTTGAACACGGCGGCGATGGCGGTGGCTAA

Protein sequence

MGEDSSEEVLVAAQLLMQLSIEDDDDDDNCGSNVVVAAENKKNKKLKKGHGGDRGDGGEEEEVDQKRYQIETSIWLKIEEIFGKDDEEEDFNSICRPKKRRFRSLQSIYITTKPIGNGRFPARGSSELEHGGDGGG

Homology

[Close]

BLAST of Carg10561 vs. NCBI nr
Match: XP_022950712.1 (uncharacterized protein LOC111453726 [Cucurbita moschata])

HSP 1 Score: 146.0 bits (367), Expect = 9.5e-32
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 64  DQKRYQIETSIWLKIEEIFGKDDEEEDFNSICRPKKRRFRSLQSIYITTKPIGNGRFPAR 123
           DQKRYQIETSIWLKIEEIFGKDDEE+DFNSICRPKKRRFRSLQSIY+TTKPIGNGRFPAR
Sbjct: 64  DQKRYQIETSIWLKIEEIFGKDDEEQDFNSICRPKKRRFRSLQSIYVTTKPIGNGRFPAR 123

Query: 124 GSSELEHGGDGGG 137
           GSSELEHGG GGG
Sbjct: 124 GSSELEHGGYGGG 136

[Close]

BLAST of Carg10561 vs. NCBI nr
Match: XP_022133223.1 (uncharacterized protein LOC111005872 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 64  DQKRYQIETSIWLKIEEIFGKDDE--EEDFNSICRPKKR--RFRSLQSIYITTKPIGNGR 121
           DQKR QIE SIW KIEEIFGK++E  EED NSICRPKKR  RFRS+QSIY+TTKPI N R
Sbjct: 57  DQKRCQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPIINAR 116

[Close]

BLAST of Carg10561 vs. NCBI nr
Match: KGN48398.1 (hypothetical protein Csa_6G486710 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-05
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 64  DQKRYQIETSIWLKIEEIFGKDDEEE----DFNSI--CRPKKRRFRSLQ 107
           DQKR QIE+S+WLKIEEIFGKD+E +      +SI   RPKKRRFRS+Q
Sbjct: 64  DQKRCQIESSVWLKIEEIFGKDNEGDHCCHXXSSIINSRPKKRRFRSIQ 112

[Close]

BLAST of Carg10561 vs. NCBI nr
Match: XP_008232192.1 (PREDICTED: uncharacterized protein LOC103331352 [Prunus mume])

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 66  KRYQIETSIWLKIEEIFGKDDEEEDFNSICRPKKRRFRSLQSIYITTKPIGNG 119
           +R  I   IW K+EEIFGK+++      + RPKKRR+RSL SIY+T+KP+  G
Sbjct: 66  QRPLINVIIWAKMEEIFGKEED------VDRPKKRRYRSLASIYLTSKPVNAG 112

[Close]

BLAST of Carg10561 vs. NCBI nr
Match: ONI01820.1 (hypothetical protein PRUPE_6G161200 [Prunus persica])

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 66  KRYQIETSIWLKIEEIFGKDDEEEDFNSICRPKKRRFRSLQSIYITTKPIGNG 119
           +R  I    W KIEEIFGK+++      + RPKKRR+RSL SIY+T+KP+  G
Sbjct: 41  QRPLINVITWAKIEEIFGKEED------VDRPKKRRYRSLASIYLTSKPVNAG 87

[Close]

BLAST of Carg10561 vs. TrEMBL
Match: tr|A0A0A0KFU1|A0A0A0KFU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486710 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 64  DQKRYQIETSIWLKIEEIFGKDDEEE----DFNSI--CRPKKRRFRSLQ 107
           DQKR QIE+S+WLKIEEIFGKD+E +      +SI   RPKKRRFRS+Q
Sbjct: 64  DQKRCQIESSVWLKIEEIFGKDNEGDHCCHXXSSIINSRPKKRRFRSIQ 112

[Close]

BLAST of Carg10561 vs. TrEMBL
Match: tr|M5WYT3|M5WYT3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppb022962mg PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-04
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 66  KRYQIETSIWLKIEEIFGKDDEEEDFNSICRPKKRRFRSLQSIYITTKPIGNG 119
           +R  I    W KIEEIFGK+++      + RPKKRR+RSL SIY+T+KP+  G
Sbjct: 55  QRPLINVITWAKIEEIFGKEED------VDRPKKRRYRSLASIYLTSKPVNAG 101

[Close]

BLAST of Carg10561 vs. TrEMBL
Match: tr|A0A251NSY7|A0A251NSY7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G161200 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-04
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 66  KRYQIETSIWLKIEEIFGKDDEEEDFNSICRPKKRRFRSLQSIYITTKPIGNG 119
           +R  I    W KIEEIFGK+++      + RPKKRR+RSL SIY+T+KP+  G
Sbjct: 41  QRPLINVITWAKIEEIFGKEED------VDRPKKRRYRSLASIYLTSKPVNAG 87

The following BLAST results are available for this feature:

BLAST of Carg10561 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950712.1	9.5e-32	95.89	uncharacterized protein LOC111453726 [Cucurbita moschata]	[more]
XP_022133223.1	1.8e-14	77.05	uncharacterized protein LOC111005872 [Momordica charantia]	[more]
KGN48398.1	2.0e-05	65.31	hypothetical protein Csa_6G486710 [Cucumis sativus]	[more]
XP_008232192.1	1.7e-04	50.94	PREDICTED: uncharacterized protein LOC103331352 [Prunus mume]	[more]
ONI01820.1	2.9e-04	50.94	hypothetical protein PRUPE_6G161200 [Prunus persica]	[more]

BLAST of Carg10561 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg10561 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg10561 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFU1\|A0A0A0KFU1_CUCSA	1.3e-05	65.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486710 PE=4 SV=1	[more]
tr\|M5WYT3\|M5WYT3_PRUPE	1.9e-04	50.94	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppb022962mg PE=4 SV=1	[more]
tr\|A0A251NSY7\|A0A251NSY7_PRUPE	1.9e-04	50.94	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G161200 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10561-RA	Carg10561-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..136

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10561	Cla008466	Watermelon (97103) v1	carwmB0226
Carg10561	Csa6G486710	Cucumber (Chinese Long) v2	carcuB0267
Carg10561	ClCG01G015770	Watermelon (Charleston Gray)	carwcgB0230
Carg10561	CSPI06G26890	Wild cucumber (PI 183967)	carcpiB0271
Carg10561	CmaCh03G010660	Cucurbita maxima (Rimu)	carcmaB0333
Carg10561	CmaCh07G007770	Cucurbita maxima (Rimu)	carcmaB0335
Carg10561	CmoCh07G008010	Cucurbita moschata (Rifu)	carcmoB0338
Carg10561	Lsi01G011190	Bottle gourd (USVL1VR-Ls)	carlsiB214
Carg10561	Cp4.1LG10g03360	Cucurbita pepo (Zucchini)	carcpeB0337
Carg10561	Cp4.1LG19g12180	Cucurbita pepo (Zucchini)	carcpeB0338
Carg10561	CsaV3_6G042040	Cucumber (Chinese Long) v3	carcucB0271
Carg10561	Cla97C01G014720	Watermelon (97103) v2	carwmbB0239
Carg10561	Bhi03G001081	Wax gourd	carwgoB0304

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10561	Silver-seed gourd	carcarB280
Carg10561	Cucumber (Gy14) v2	carcgybB0253
Carg10561	Cucumber (Gy14) v2	carcgybB0255
Carg10561	Cucumber (Gy14) v1	carcgyB0280
Carg10561	Cucumber (Gy14) v1	carcgyB0283
Carg10561	Cucurbita moschata (Rifu)	carcmoB0336
Carg10561	Wild cucumber (PI 183967)	carcpiB0268
Carg10561	Cucumber (Chinese Long) v2	carcuB0264
Carg10561	Cucumber (Chinese Long) v3	carcucB0268
Carg10561	Bottle gourd (USVL1VR-Ls)	carlsiB213
Carg10561	Melon (DHL92) v3.5.1	carmeB0242
Carg10561	Melon (DHL92) v3.6.1	carmedB0251
Carg10561	Watermelon (97103) v1	carwmB0229
Carg10561	Watermelon (97103) v2	carwmbB0243