Csa6G486710 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G486710
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 22561756 .. 22562234 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAATCCTCGAGTTCGCCTAATTCGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGTTAAGCAACGACGACAATAGTAGCAATGTCGACGTAGTCGTTGCGGAGGCGAAGAAGAACAAGAAGAAGGATTTTGGTGGGGATGGGGGTGGGGGTGGTGGCTGTCGAGAGGAAGAGGTTGATCAAAAGAGATGTCAAATAGAATCGTCGGTTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATAATGAAGGAGATCATTGTTGTCATCATCATTCTTCTATTATTAATTCTCGTCCTAAGAAGAGACGATTTCGATCCATTCAAAGTATTTATATGAAGACTAAACCTATCACTAATGGTAGATTCTCTACTAAGACAATGGTCGGGAATTGAACGCGGTGGCAGTGGCCGTGCATGGCGACGACGGTGGTAGGACGTTATCGACTAATTTGGAGTACTTTTTTTAG

mRNA sequence

ATGGAAGAAGAATCCTCGAGTTCGCCTAATTCGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGTTAAGCAACGACGACAATAGTAGCAATGTCGACGTAGTCGTTGCGGAGGCGAAGAAGAACAAGAAGAAGGATTTTGGTGGGGATGGGGGTGGGGGTGGTGGCTGTCGAGAGGAAGAGGTTGATCAAAAGAGATGTCAAATAGAATCGTCGGTTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATAATGAAGGAGATCATTGTTGTCATCATCATTCTTCTATTATTAATTCTCGTCCTAAGAAGAGACGATTTCGATCCATTCAAATGGCCGTGCATGGCGACGACGGTGGTAGGACGTTATCGACTAATTTGGAGTACTTTTTTTAG

Coding sequence (CDS)

ATGGAAGAAGAATCCTCGAGTTCGCCTAATTCGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGTTAAGCAACGACGACAATAGTAGCAATGTCGACGTAGTCGTTGCGGAGGCGAAGAAGAACAAGAAGAAGGATTTTGGTGGGGATGGGGGTGGGGGTGGTGGCTGTCGAGAGGAAGAGGTTGATCAAAAGAGATGTCAAATAGAATCGTCGGTTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATAATGAAGGAGATCATTGTTGTCATCATCATTCTTCTATTATTAATTCTCGTCCTAAGAAGAGACGATTTCGATCCATTCAAATGGCCGTGCATGGCGACGACGGTGGTAGGACGTTATCGACTAATTTGGAGTACTTTTTTTAG

Protein sequence

MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCREEEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQMAVHGDDGGRTLSTNLEYFF*
Homology
[Close]
BLAST of Csa6G486710 vs. TrEMBL
Match: A0A0A0KFU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486710 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 8.1e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 1   MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE 60
           MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE
Sbjct: 1   MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE 60

Query: 61  EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQMAVHGDDG 120
           EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQMAVHGDDG
Sbjct: 61  EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQMAVHGDDG 120

Query: 121 GRTLSTNLEYFF 133
           GRTLSTNLEYFF
Sbjct: 121 GRTLSTNLEYFF 132

[Close]
BLAST of Csa6G486710 vs. TrEMBL
Match: M5WYT3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb022962mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-06
Identity = 42/101 (41.58%), Postives = 54/101 (53.47%), Query Frame = 1 

Query: 11  SEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCREEEVDQKRCQI 70
           +E  L AAQQLMQLS++DN++N     + + KN K +             EEVDQ R  I
Sbjct: 16  TESELAAAQQLMQLSDEDNNNNSS---SSSNKNTKHE------------GEEVDQ-RPLI 75

Query: 71  ESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSI 112
               W KIEEIFGK+ + D            RPKKRR+RS+
Sbjct: 76  NVITWAKIEEIFGKEEDVD------------RPKKRRYRSL 88

[Close]
BLAST of Csa6G486710 vs. NCBI nr
Match: gi|700193194|gb|KGN48398.1| (hypothetical protein Csa_6G486710 [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-70
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 1   MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE 60
           MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE
Sbjct: 1   MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE 60

Query: 61  EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQMAVHGDDG 120
           EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQMAVHGDDG
Sbjct: 61  EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQMAVHGDDG 120

Query: 121 GRTLSTNLEYFF 133
           GRTLSTNLEYFF
Sbjct: 121 GRTLSTNLEYFF 132

[Close]
BLAST of Csa6G486710 vs. NCBI nr
Match: gi|802615673|ref|XP_012075291.1| (PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1 

Query: 17  AAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCREEEVDQKRCQIESSVWL 76
           AAQQLMQLS++DNS++  +   ++K  KK  F GD        EEE D+   Q E +   
Sbjct: 21  AAQQLMQLSDEDNSNSNSINEKKSKNMKKSGFDGD-------IEEEFDRFISQDEITS-K 80

Query: 77  KIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQ 113
           KIEEIFGK+ E         SII  RP+K+R+RS++
Sbjct: 81  KIEEIFGKEEE------EKISIILGRPRKKRYRSLE 102

[Close]
BLAST of Csa6G486710 vs. NCBI nr
Match: gi|595886088|ref|XP_007213274.1| (hypothetical protein PRUPE_ppb022962mg [Prunus persica])

HSP 1 Score: 58.9 bits (141), Expect = 7.7e-06
Identity = 42/101 (41.58%), Postives = 54/101 (53.47%), Query Frame = 1 

Query: 11  SEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCREEEVDQKRCQI 70
           +E  L AAQQLMQLS++DN++N     + + KN K +             EEVDQ R  I
Sbjct: 16  TESELAAAQQLMQLSDEDNNNNSS---SSSNKNTKHE------------GEEVDQ-RPLI 75

Query: 71  ESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSI 112
               W KIEEIFGK+ + D            RPKKRR+RS+
Sbjct: 76  NVITWAKIEEIFGKEEDVD------------RPKKRRYRSL 88

The following BLAST results are available for this feature:
BLAST of Csa6G486710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFU1_CUCSA8.1e-71100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486710 PE=4 SV=1[more]
M5WYT3_PRUPE5.3e-0641.58Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb022962mg PE=4 SV=1[more]
BLAST of Csa6G486710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193194|gb|KGN48398.1|1.2e-70100.00hypothetical protein Csa_6G486710 [Cucumis sativus][more]
gi|802615673|ref|XP_012075291.1|1.5e-0643.75PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas][more]
gi|595886088|ref|XP_007213274.1|7.7e-0641.58hypothetical protein PRUPE_ppb022962mg [Prunus persica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G486710.1Csa6G486710.1mRNA


Synteny