Carg08172 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08172
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein, LEA-14
Location	Cucurbita_argyrosperma_scaffold_050 : 1122758 .. 1124955 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGATGACGTCACGGCCTAATGTGAACTCCCGCAATAACCCCCTGCAACGTCCTCTTCCACCGCCACCGTCGAGAGTAAGAGCAGGACCAAGCAACAACAATCACCGTCCTCTTCCACCCCCACCGTCAAGAGCTCCTTTTAATGTCCAACACGACACTCACCGTTCTCCTCTTCCTTCAATGCCACCGTCCAGGCCGAATTCCGACTCTCAGAATGCTCGCTTTCCGTCTCCGCCCTCGTCGCCACCGTTATCTCGTCGGCAGCATTTTGGTTACGACACGACGTCGTCTTCCTCATCGGCTTCCTTCCGAGGCTGTTGCTGCTGCCTCTGCCTCCTCTTCTCCTTCATCGCTCTCCTCGCTCTCGCGATCGTCCTCGTCGTCGTTCTCGCCGTCAAGCCTAAGAAGCCTCAATTCGATCTCCAGCGAGTCGGTGTTCAATATATGGGGATAACCACTCCGAATCTCTTCTCCTTATCCTCCGCCGATTCACAGACCGTGACAACGCCGACGCCGACAACGACCTCCGCAGCGCTATCGCTCAACATTCGATTGCTGTTCACGGCAGTGAATCCAAACAAGGTCGGAATCAAATACGGGAATTCAAGGTTCACAGTGATGTACCGCGGGATTCCGCTAGGAAAAGCAATAGTGCCTGGATTTTACCAAGAGGCGCACAGCCAGAGAGAAGTGGAGGCAATGATCGCCGTCGATCGAGTGAATCTACTTCAGGCAGACGCCGCCGATTTGATCAGAGACGCGTCGTTGAACGATCGAGTGGAGCTGAGGGTTTTGGGCGAAGTTGGCGCCAGGATCCGCGTATTGGAGTTCGATTCTCCCGGCGTTCAGGTCAGTTCCTTTTTCTTCCCATTTCTCGTCTTCTTTTGCACGCATTTTCCTCCCGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTAAGTTTTAAAATTATAATTTTAACATTTAGTCTATCAAATTTGTGCTTCCTATTTTTTTTTTTTTTAAAAGTATATTTTATATTTTATGATCCATAAATTAGTGGATTAAAAAAAACAAAAGTTAAAAGGCTAAATTACATAAATTAAATTAAACTGGTAAGGAGAGTTTATAATTAAACTTTTTAATATATTAATAGAAAAAATAAATGTGAGTTAGGAAGCCGCGCTAATAATAGTAGGGGGCAGTGTGTTTTAAGGATTTATTATTATTTATAAAAAAGCTTCAATTTATTAGTTTAATACTTTGAATTATCCATATAGAAATTTGTTATTTTAAAAAAGAAAAACATCCAACTTTTAATTAGCATAATAGACAAAATAAAAGAATAAAAAACAGAAGTACAAAACAATTAGCTAATCAAAATAATTCTCAATCCCAAAAAAAAAAATAATAATAATAAATAAATAGACAAGAATAATTGTGATTTTTTCTTTTAAATTCAATAATTTTTATTGTTGTATTTTTCAATATATATCTATATATGTATATATTTATTAATCATATTTACATTTTGTTTTTCTTCCGTAAAAAAAAAATTATTATTATTTGAAAAGAATAAAATTAAAATAAAAAAGTATTAAAAAGTCAAAGTGATAAAACATTGGGAAACCGCTTCCGAATAAAACGGTGCCGCTTAGTTGCTTTACGACAAAATGGTGGGGGCCACACCGACCGAATAAAACTGCTTTGTTTTTTCAACCCTTTCACATTTGGGAGTTTTTTTTATTTATTATTTTTTAATATTTATTTAACTTATTTACTTTATCCTTTTACTCATCATGTCTTGTCCCTATTTATCTACCTAATATAATAATAATAATATCACCTTTTTTTCCGTACCCATTGTGTTTAATTTTTTCTTTTTTTAGTCGAAGATTCAAATTCTCGTACTCTTTTTTAAATATAAGTATATTCCCATTTCACCATTGAATTGGGTCGAGGAATAATGAATATTTTTTCTTAAAGAAAATGTCAAGCTCAACTACTAGCCATTACTCAGTTTATGTTGTTGCATGATCAAGTTTTATCGTGTTAAGTTCATTATGTTCTTGTGATTCTGTACGAGTTTTTGTTTATGGTTGTGTAGTCAAATATTTTGAATGACGACAGGTGTCGGTGGATTGCTCGATAGTGATAAGTCCAAGGAATCAGTCGTTGACTTCGAAGCAATGTGGATTTGATGGGTTCAGCTTATGA

mRNA sequence

ATGGAGGAGATGACGTCACGGCCTAATGTGAACTCCCGCAATAACCCCCTGCAACGTCCTCTTCCACCGCCACCGTCGAGAGTAAGAGCAGGACCAAGCAACAACAATCACCGTCCTCTTCCACCCCCACCGTCAAGAGCTCCTTTTAATGTCCAACACGACACTCACCGTTCTCCTCTTCCTTCAATGCCACCGTCCAGGCCGAATTCCGACTCTCAGAATGCTCGCTTTCCGTCTCCGCCCTCGTCGCCACCGTTATCTCGTCGGCAGCATTTTGGTTACGACACGACGTCGTCTTCCTCATCGGCTTCCTTCCGAGGCTGTTGCTGCTGCCTCTGCCTCCTCTTCTCCTTCATCGCTCTCCTCGCTCTCGCGATCGTCCTCGTCGTCGTTCTCGCCGTCAAGCCTAAGAAGCCTCAATTCGATCTCCAGCGAGTCGGTGTTCAATATATGGGGATAACCACTCCGAATCTCTTCTCCTTATCCTCCGCCGATTCACAGACCGTGACAACGCCGACGCCGACAACGACCTCCGCAGCGCTATCGCTCAACATTCGATTGCTGTTCACGGCAGTGAATCCAAACAAGGTCGGAATCAAATACGGGAATTCAAGGTTCACAGTGATGTACCGCGGGATTCCGCTAGGAAAAGCAATAGTGCCTGGATTTTACCAAGAGGCGCACAGCCAGAGAGAAGTGGAGGCAATGATCGCCGTCGATCGAGTGAATCTACTTCAGGCAGACGCCGCCGATTTGATCAGAGACGCGTCGTTGAACGATCGAGTGGAGCTGAGGGTTTTGGGCGAAGTTGGCGCCAGGATCCGCGTATTGGAGTTCGATTCTCCCGGCGTTCAGGTGTCGGTGGATTGCTCGATAGTGATAAGTCCAAGGAATCAGTCGTTGACTTCGAAGCAATGTGGATTTGATGGGTTCAGCTTATGA

Coding sequence (CDS)

ATGGAGGAGATGACGTCACGGCCTAATGTGAACTCCCGCAATAACCCCCTGCAACGTCCTCTTCCACCGCCACCGTCGAGAGTAAGAGCAGGACCAAGCAACAACAATCACCGTCCTCTTCCACCCCCACCGTCAAGAGCTCCTTTTAATGTCCAACACGACACTCACCGTTCTCCTCTTCCTTCAATGCCACCGTCCAGGCCGAATTCCGACTCTCAGAATGCTCGCTTTCCGTCTCCGCCCTCGTCGCCACCGTTATCTCGTCGGCAGCATTTTGGTTACGACACGACGTCGTCTTCCTCATCGGCTTCCTTCCGAGGCTGTTGCTGCTGCCTCTGCCTCCTCTTCTCCTTCATCGCTCTCCTCGCTCTCGCGATCGTCCTCGTCGTCGTTCTCGCCGTCAAGCCTAAGAAGCCTCAATTCGATCTCCAGCGAGTCGGTGTTCAATATATGGGGATAACCACTCCGAATCTCTTCTCCTTATCCTCCGCCGATTCACAGACCGTGACAACGCCGACGCCGACAACGACCTCCGCAGCGCTATCGCTCAACATTCGATTGCTGTTCACGGCAGTGAATCCAAACAAGGTCGGAATCAAATACGGGAATTCAAGGTTCACAGTGATGTACCGCGGGATTCCGCTAGGAAAAGCAATAGTGCCTGGATTTTACCAAGAGGCGCACAGCCAGAGAGAAGTGGAGGCAATGATCGCCGTCGATCGAGTGAATCTACTTCAGGCAGACGCCGCCGATTTGATCAGAGACGCGTCGTTGAACGATCGAGTGGAGCTGAGGGTTTTGGGCGAAGTTGGCGCCAGGATCCGCGTATTGGAGTTCGATTCTCCCGGCGTTCAGGTGTCGGTGGATTGCTCGATAGTGATAAGTCCAAGGAATCAGTCGTTGACTTCGAAGCAATGTGGATTTGATGGGTTCAGCTTATGA

Protein sequence

MEEMTSRPNVNSRNNPLQRPLPPPPSRVRAGPSNNNHRPLPPPPSRAPFNVQHDTHRSPLPSMPPSRPNSDSQNARFPSPPSSPPLSRRQHFGYDTTSSSSSASFRGCCCCLCLLFSFIALLALAIVLVVVLAVKPKKPQFDLQRVGVQYMGITTPNLFSLSSADSQTVTTPTPTTTSAALSLNIRLLFTAVNPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVDRVNLLQADAADLIRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL

Homology

[Close]

BLAST of Carg08172 vs. NCBI nr
Match: XP_022942979.1 (uncharacterized protein LOC111447854 [Cucurbita moschata] >XP_022942980.1 uncharacterized protein LOC111447854 [Cucurbita moschata] >XP_022942981.1 uncharacterized protein LOC111447854 [Cucurbita moschata] >XP_022942983.1 uncharacterized protein LOC111447854 [Cucurbita moschata] >XP_022942984.1 uncharacterized protein LOC111447854 [Cucurbita moschata])

HSP 1 Score: 329.3 bits (843), Expect = 1.4e-86
Identity = 312/313 (99.68%), Postives = 312/313 (99.68%), Query Frame = 0


Query: 1   MEEMTSRPNVNSRNNPLQRPLPPPPSRVRAGPSXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEEMTSRPNVNSRNNPLQRPLPPPPSRVRAGPSXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEMTSRPNVNSRNNPLQRPLPPPPSRVRAGPSXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHFGYDTXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX QHFGYDTXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHFGYDTXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXPQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXPQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXPQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXLFTAVNPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVD 240
           XXXXXXXLFTAVNPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVD
Sbjct: 181 XXXXXXXLFTAVNPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVD 240

Query: 241 RVNLLQADAADLIRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQS 300
           RVNLLQADAADLIRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQS
Sbjct: 241 RVNLLQADAADLIRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQS 300

Query: 301 LTSKQCGFDGFSL 314
           LTSKQCGFDGFSL
Sbjct: 301 LTSKQCGFDGFSL 313

[Close]

BLAST of Carg08172 vs. NCBI nr
Match: XP_022981995.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima] >XP_022982003.1 proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima] >XP_022982009.1 proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima] >XP_022982017.1 proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima])

HSP 1 Score: 325.5 bits (833), Expect = 2.0e-85
Identity = 308/313 (98.40%), Postives = 308/313 (98.40%), Query Frame = 0


Query: 1   MEEMTSRPNVNSRNNPLQRPLPPPPSRVRAGPSXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEEMTSRPNVNSRNNP QRPLPPPPSR RAGP XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEMTSRPNVNSRNNPPQRPLPPPPSRARAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHFGYDTXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXX  RQHFGYDTXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXSRRQHFGYDTXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXPQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXPQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXPQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXLFTAVNPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVD 240
           XXXXXXXLFTAVNPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVD
Sbjct: 181 XXXXXXXLFTAVNPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVD 240

Query: 241 RVNLLQADAADLIRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQS 300
           RVNLLQADAADLIRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQS
Sbjct: 241 RVNLLQADAADLIRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQS 300

Query: 301 LTSKQCGFDGFSL 314
           LTSKQCGFDGFSL
Sbjct: 301 LTSKQCGFDGFSL 313

[Close]

BLAST of Carg08172 vs. NCBI nr
Match: XP_023517250.1 (uncharacterized protein LOC111781071 [Cucurbita pepo subsp. pepo] >XP_023517259.1 uncharacterized protein LOC111781071 [Cucurbita pepo subsp. pepo] >XP_023517266.1 uncharacterized protein LOC111781071 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.1 bits (819), Expect = 8.4e-84
Identity = 309/315 (98.10%), Postives = 309/315 (98.10%), Query Frame = 0


Query: 1   MEEMTSRPNVNSRNNPLQRPLPPPPSRVRAGPSXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEEMTSRPNVNSRNNPLQRPLPPPPSRVRA  SXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEMTSRPNVNSRNNPLQRPLPPPPSRVRAVASXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHFGYDTXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXX  RQHFGYDTXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXSRRQHFGYDTXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXPQFDLQRVGVQYMGITTPNLFSL--XXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXPQFDLQRVGVQYMGITTPNLFSL  XXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXPQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXLFTAVNPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIA 240
           XXXXXXXXXLFTAVNPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIA
Sbjct: 181 XXXXXXXXXLFTAVNPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIA 240

Query: 241 VDRVNLLQADAADLIRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRN 300
           VDRVNLLQADAADLIRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRN
Sbjct: 241 VDRVNLLQADAADLIRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRN 300

Query: 301 QSLTSKQCGFDGFSL 314
           QSLTSKQCGFDGFSL
Sbjct: 301 QSLTSKQCGFDGFSL 315

[Close]

BLAST of Carg08172 vs. NCBI nr
Match: XP_004140800.1 (PREDICTED: proline-rich receptor-like protein kinase PERK10 [Cucumis sativus] >KGN57549.1 hypothetical protein Csa_3G209460 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 6.9e-70
Identity = 168/175 (96.00%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 139 PQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG 198
           PQFDLQRVGVQYMGIT PNLFSL  XXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG
Sbjct: 128 PQFDLQRVGVQYMGITAPNLFSL--XXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG 187

Query: 199 IKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVDRVNLLQADAADLIRDASL 258
           IKYG+SRFTVMYRGIPLGKAIVPGFYQEAHS+REVEA IAVDRVNLLQADAADLIRDASL
Sbjct: 188 IKYGDSRFTVMYRGIPLGKAIVPGFYQEAHSEREVEATIAVDRVNLLQADAADLIRDASL 247

Query: 259 NDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 314
           NDRVELRVLGEVGARIRVL+FDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL
Sbjct: 248 NDRVELRVLGEVGARIRVLDFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 300

[Close]

BLAST of Carg08172 vs. NCBI nr
Match: XP_008456109.1 (PREDICTED: proline-rich receptor-like protein kinase PERK10 [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 6.9e-70
Identity = 161/175 (92.00%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 139 PQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG 198
           PQFDLQRVGVQYMGIT PNLFSL     XXXXXXXXXXXXXXXXX    LFTAVNPNKVG
Sbjct: 128 PQFDLQRVGVQYMGITAPNLFSL--SSSXXXXXXXXXXXXXXXXXNIRLLFTAVNPNKVG 187

Query: 199 IKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVDRVNLLQADAADLIRDASL 258
           IKYG+SRFTVMYRGIPLGKAIVPGFYQEAHS+REVEA IAVDRVNLLQADAADLIRDASL
Sbjct: 188 IKYGDSRFTVMYRGIPLGKAIVPGFYQEAHSEREVEATIAVDRVNLLQADAADLIRDASL 247

Query: 259 NDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 314
           NDRVELRVLGEVGARIRVL+FDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL
Sbjct: 248 NDRVELRVLGEVGARIRVLDFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 300

[Close]

BLAST of Carg08172 vs. TAIR10
Match: AT2G01080.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 209.5 bits (532), Expect = 2.9e-54
Identity = 108/175 (61.71%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 139 PQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG 198
           PQFDLQ+V V YMGI+ P+                              LFTAVNPNKVG
Sbjct: 71  PQFDLQQVAVVYMGISNPS--------------AVLDPTTASLSLTIRMLFTAVNPNKVG 130

Query: 199 IKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVDRVNLLQADAADLIRDASL 258
           I+YG S FTVMY+G+PLG+A VPGFYQ+AHS + VEA I+VDRVNL+QA AADL+RDASL
Sbjct: 131 IRYGESSFTVMYKGMPLGRATVPGFYQDAHSTKNVEATISVDRVNLMQAHAADLVRDASL 190

Query: 259 NDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 314
           NDRVEL V G+VGA+IRV+ FDSPGVQVSV+C I ISPR Q+L  KQCGFDG S+
Sbjct: 191 NDRVELTVRGDVGAKIRVMNFDSPGVQVSVNCGIGISPRKQALIYKQCGFDGLSV 231

[Close]

BLAST of Carg08172 vs. TAIR10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 43.5 bits (101), Expect = 2.8e-04
Identity = 30/116 (25.86%), Postives = 54/116 (46.55%), Query Frame = 0


Query: 193 NPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVDRVNLLQADAADL 252
           NPN++G  Y +S   + YRG  +G+A +P     A     +   + +    LL      L
Sbjct: 119 NPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLL--SETQL 178

Query: 253 IRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQSLTSKQCGF 309
           + D  +   + L    +V  ++ VL+     VQ S  C + IS  ++++TS+ C +
Sbjct: 179 LSDV-MAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCKY 231

[Close]

BLAST of Carg08172 vs. TrEMBL
Match: tr|A0A1S3C355|A0A1S3C355_CUCME (proline-rich receptor-like protein kinase PERK10 OS=Cucumis melo OX=3656 GN=LOC103496146 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.6e-70
Identity = 161/175 (92.00%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 139 PQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG 198
           PQFDLQRVGVQYMGIT PNLFSL     XXXXXXXXXXXXXXXXX    LFTAVNPNKVG
Sbjct: 128 PQFDLQRVGVQYMGITAPNLFSL--SSSXXXXXXXXXXXXXXXXXNIRLLFTAVNPNKVG 187

Query: 199 IKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVDRVNLLQADAADLIRDASL 258
           IKYG+SRFTVMYRGIPLGKAIVPGFYQEAHS+REVEA IAVDRVNLLQADAADLIRDASL
Sbjct: 188 IKYGDSRFTVMYRGIPLGKAIVPGFYQEAHSEREVEATIAVDRVNLLQADAADLIRDASL 247

Query: 259 NDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 314
           NDRVELRVLGEVGARIRVL+FDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL
Sbjct: 248 NDRVELRVLGEVGARIRVLDFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 300

[Close]

BLAST of Carg08172 vs. TrEMBL
Match: tr|A0A0A0L9B0|A0A0A0L9B0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209460 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.6e-70
Identity = 168/175 (96.00%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 139 PQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG 198
           PQFDLQRVGVQYMGIT PNLFSL  XXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG
Sbjct: 128 PQFDLQRVGVQYMGITAPNLFSL--XXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG 187

Query: 199 IKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVDRVNLLQADAADLIRDASL 258
           IKYG+SRFTVMYRGIPLGKAIVPGFYQEAHS+REVEA IAVDRVNLLQADAADLIRDASL
Sbjct: 188 IKYGDSRFTVMYRGIPLGKAIVPGFYQEAHSEREVEATIAVDRVNLLQADAADLIRDASL 247

Query: 259 NDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 314
           NDRVELRVLGEVGARIRVL+FDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL
Sbjct: 248 NDRVELRVLGEVGARIRVLDFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 300

[Close]

BLAST of Carg08172 vs. TrEMBL
Match: tr|A0A1U8LQD8|A0A1U8LQD8_GOSHI (uncharacterized protein LOC107928886 OS=Gossypium hirsutum OX=3635 GN=LOC107928886 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60
Identity = 126/175 (72.00%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 139 PQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG 198
           PQFDLQ+VGVQYMGI+T N  SL                          LFTAVNPNKVG
Sbjct: 75  PQFDLQQVGVQYMGISTSNPSSL----DGTSTAVSPSPTTASLSLTIHLLFTAVNPNKVG 134

Query: 199 IKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVDRVNLLQADAADLIRDASL 258
           IKYG SRFTVMYRGIPLGKA VPGFYQEAHS R VEA IAVDR NL+QADAADLIRDASL
Sbjct: 135 IKYGESRFTVMYRGIPLGKASVPGFYQEAHSTRNVEATIAVDRANLMQADAADLIRDASL 194

Query: 259 NDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 314
           +DRV+LRVLG+VGA+IRVL+FDSPGVQVSVDC+IVISPR QS+T KQCGFDG S+
Sbjct: 195 SDRVQLRVLGDVGAKIRVLDFDSPGVQVSVDCAIVISPRKQSITDKQCGFDGLSV 245

[Close]

BLAST of Carg08172 vs. TrEMBL
Match: tr|A0A0D2QY00|A0A0D2QY00_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G001400 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60
Identity = 141/175 (80.57%), Postives = 152/175 (86.86%), Query Frame = 0


Query: 139 PQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG 198
           PQFDLQ+VGVQYMGI+T N  SL       XXXXXXXXXXXXXXX    LFTAVNPNKVG
Sbjct: 75  PQFDLQQVGVQYMGISTSNPSSL----DGTXXXXXXXXXXXXXXXTIHLLFTAVNPNKVG 134

Query: 199 IKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVDRVNLLQADAADLIRDASL 258
           IKYG SRFTVMYRGIPLGKA VPGFYQEAHS R VEA IAVDR NL+QADAADLIRDASL
Sbjct: 135 IKYGESRFTVMYRGIPLGKASVPGFYQEAHSTRNVEATIAVDRANLMQADAADLIRDASL 194

Query: 259 NDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 314
           +DRV+LRVLG+VGA+IRVL+FDSPGVQVSVDC+IVISPR QS+T KQCGFDG S+
Sbjct: 195 SDRVQLRVLGDVGAKIRVLDFDSPGVQVSVDCAIVISPRKQSITDKQCGFDGLSV 245

[Close]

BLAST of Carg08172 vs. TrEMBL
Match: tr|A0A2P5VSS0|A0A2P5VSS0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38867 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60
Identity = 126/175 (72.00%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 139 PQFDLQRVGVQYMGITTPNLFSLXXXXXXXXXXXXXXXXXXXXXXXXXXLFTAVNPNKVG 198
           PQFDLQ+VGVQYMGI+T N  SL                          LFTAVNPNKVG
Sbjct: 75  PQFDLQQVGVQYMGISTSNPSSL----DGTSTAVSPSPTTASLSLTIHLLFTAVNPNKVG 134

Query: 199 IKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVDRVNLLQADAADLIRDASL 258
           IKYG SRFTVMYRGIPLGKA VPGFYQEAHS R VEA IAVDR NL+QADAADLIRDASL
Sbjct: 135 IKYGESRFTVMYRGIPLGKASVPGFYQEAHSTRNVEATIAVDRANLMQADAADLIRDASL 194

Query: 259 NDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL 314
           +DRV+LRVLG+VGA+IRVL+FDSPGVQVSVDC+IVISPR QS+T KQCGFDG S+
Sbjct: 195 SDRVQLRVLGDVGAKIRVLDFDSPGVQVSVDCAIVISPRKQSITDKQCGFDGLSV 245

The following BLAST results are available for this feature:

BLAST of Carg08172 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942979.1	1.4e-86	99.68	uncharacterized protein LOC111447854 [Cucurbita moschata] >XP_022942980.1 unchar...	[more]
XP_022981995.1	2.0e-85	98.40	proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima] >XP_02298200...	[more]
XP_023517250.1	8.4e-84	98.10	uncharacterized protein LOC111781071 [Cucurbita pepo subsp. pepo] >XP_023517259....	[more]
XP_004140800.1	6.9e-70	96.00	PREDICTED: proline-rich receptor-like protein kinase PERK10 [Cucumis sativus] >K...	[more]
XP_008456109.1	6.9e-70	92.00	PREDICTED: proline-rich receptor-like protein kinase PERK10 [Cucumis melo]	[more]

BLAST of Carg08172 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01080.1	2.9e-54	61.71	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G54200.1	2.8e-04	25.86	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of Carg08172 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08172 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C355\|A0A1S3C355_CUCME	4.6e-70	92.00	proline-rich receptor-like protein kinase PERK10 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A0A0L9B0\|A0A0A0L9B0_CUCSA	4.6e-70	96.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209460 PE=4 SV=1	[more]
tr\|A0A1U8LQD8\|A0A1U8LQD8_GOSHI	3.3e-60	72.00	uncharacterized protein LOC107928886 OS=Gossypium hirsutum OX=3635 GN=LOC1079288...	[more]
tr\|A0A0D2QY00\|A0A0D2QY00_GOSRA	3.3e-60	80.57	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G001400 PE=4 ...	[more]
tr\|A0A2P5VSS0\|A0A2P5VSS0_GOSBA	3.3e-60	72.00	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38867 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08172-RA	Carg08172-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 191..290 e-value: 1.2E-10 score: 41.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..103
None	No IPR available	PANTHER	PTHR31234	FAMILY NOT NAMED	coord: 87..312
None	No IPR available	PANTHER	PTHR31234:SF8	EXPRESSED PROTEIN	coord: 87..312

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08172	Cla013056	Watermelon (97103) v1	carwmB0371
Carg08172	Csa3G209460	Cucumber (Chinese Long) v2	carcuB0400
Carg08172	MELO3C019499	Melon (DHL92) v3.5.1	carmeB0380
Carg08172	ClCG05G009890	Watermelon (Charleston Gray)	carwcgB0370
Carg08172	CSPI03G18650	Wild cucumber (PI 183967)	carcpiB0405
Carg08172	Cucsa.244220	Cucumber (Gy14) v1	carcgyB0436
Carg08172	CmaCh04G005020	Cucurbita maxima (Rimu)	carcmaB0529
Carg08172	CmoCh04G005410	Cucurbita moschata (Rifu)	carcmoB0514
Carg08172	Lsi05G002020	Bottle gourd (USVL1VR-Ls)	carlsiB346
Carg08172	Cp4.1LG01g02100	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08172	CsGy3G018490	Cucumber (Gy14) v2	carcgybB0380
Carg08172	MELO3C031692.2	Melon (DHL92) v3.6.1	carmedB0384
Carg08172	CsaV3_3G018700	Cucumber (Chinese Long) v3	carcucB0403
Carg08172	Cla97C05G092300	Watermelon (97103) v2	carwmbB0396
Carg08172	Bhi01G001245	Wax gourd	carwgoB0459

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08172	Wax gourd	carwgoB0458
Carg08172	Silver-seed gourd	carcarB403
Carg08172	Cucurbita maxima (Rimu)	carcmaB0526
Carg08172	Cucurbita moschata (Rifu)	carcmoB0509
Carg08172	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08172	Melon (DHL92) v3.5.1	carmeB0379
Carg08172	Watermelon (Charleston Gray)	carwcgB0369
Carg08172	Watermelon (97103) v1	carwmB0370
Carg08172	Watermelon (97103) v2	carwmbB0395