Carg08172-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGAGATGACGTCACGGCCTAATGTGAACTCCCGCAATAACCCCCTGCAACGTCCTCTTCCACCGCCACCGTCGAGAGTAAGAGCAGGACCAAGCAACAACAATCACCGTCCTCTTCCACCCCCACCGTCAAGAGCTCCTTTTAATGTCCAACACGACACTCACCGTTCTCCTCTTCCTTCAATGCCACCGTCCAGGCCGAATTCCGACTCTCAGAATGCTCGCTTTCCGTCTCCGCCCTCGTCGCCACCGTTATCTCGTCGGCAGCATTTTGGTTACGACACGACGTCGTCTTCCTCATCGGCTTCCTTCCGAGGCTGTTGCTGCTGCCTCTGCCTCCTCTTCTCCTTCATCGCTCTCCTCGCTCTCGCGATCGTCCTCGTCGTCGTTCTCGCCGTCAAGCCTAAGAAGCCTCAATTCGATCTCCAGCGAGTCGGTGTTCAATATATGGGGATAACCACTCCGAATCTCTTCTCCTTATCCTCCGCCGATTCACAGACCGTGACAACGCCGACGCCGACAACGACCTCCGCAGCGCTATCGCTCAACATTCGATTGCTGTTCACGGCAGTGAATCCAAACAAGGTCGGAATCAAATACGGGAATTCAAGGTTCACAGTGATGTACCGCGGGATTCCGCTAGGAAAAGCAATAGTGCCTGGATTTTACCAAGAGGCGCACAGCCAGAGAGAAGTGGAGGCAATGATCGCCGTCGATCGAGTGAATCTACTTCAGGCAGACGCCGCCGATTTGATCAGAGACGCGTCGTTGAACGATCGAGTGGAGCTGAGGGTTTTGGGCGAAGTTGGCGCCAGGATCCGCGTATTGGAGTTCGATTCTCCCGGCGTTCAGGTCAGTTCCTTTTTCTTCCCATTTCTCGTCTTCTTTTGCACGCATTTTCCTCCCGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTAAGTTTTAAAATTATAATTTTAACATTTAGTCTATCAAATTTGTGCTTCCTATTTTTTTTTTTTTTAAAAGTATATTTTATATTTTATGATCCATAAATTAGTGGATTAAAAAAAACAAAAGTTAAAAGGCTAAATTACATAAATTAAATTAAACTGGTAAGGAGAGTTTATAATTAAACTTTTTAATATATTAATAGAAAAAATAAATGTGAGTTAGGAAGCCGCGCTAATAATAGTAGGGGGCAGTGTGTTTTAAGGATTTATTATTATTTATAAAAAAGCTTCAATTTATTAGTTTAATACTTTGAATTATCCATATAGAAATTTGTTATTTTAAAAAAGAAAAACATCCAACTTTTAATTAGCATAATAGACAAAATAAAAGAATAAAAAACAGAAGTACAAAACAATTAGCTAATCAAAATAATTCTCAATCCCAAAAAAAAAAATAATAATAATAAATAAATAGACAAGAATAATTGTGATTTTTTCTTTTAAATTCAATAATTTTTATTGTTGTATTTTTCAATATATATCTATATATGTATATATTTATTAATCATATTTACATTTTGTTTTTCTTCCGTAAAAAAAAAATTATTATTATTTGAAAAGAATAAAATTAAAATAAAAAAGTATTAAAAAGTCAAAGTGATAAAACATTGGGAAACCGCTTCCGAATAAAACGGTGCCGCTTAGTTGCTTTACGACAAAATGGTGGGGGCCACACCGACCGAATAAAACTGCTTTGTTTTTTCAACCCTTTCACATTTGGGAGTTTTTTTTATTTATTATTTTTTAATATTTATTTAACTTATTTACTTTATCCTTTTACTCATCATGTCTTGTCCCTATTTATCTACCTAATATAATAATAATAATATCACCTTTTTTTCCGTACCCATTGTGTTTAATTTTTTCTTTTTTTAGTCGAAGATTCAAATTCTCGTACTCTTTTTTAAATATAAGTATATTCCCATTTCACCATTGAATTGGGTCGAGGAATAATGAATATTTTTTCTTAAAGAAAATGTCAAGCTCAACTACTAGCCATTACTCAGTTTATGTTGTTGCATGATCAAGTTTTATCGTGTTAAGTTCATTATGTTCTTGTGATTCTGTACGAGTTTTTGTTTATGGTTGTGTAGTCAAATATTTTGAATGACGACAGGTGTCGGTGGATTGCTCGATAGTGATAAGTCCAAGGAATCAGTCGTTGACTTCGAAGCAATGTGGATTTGATGGGTTCAGCTTATGA ATGGAGGAGATGACGTCACGGCCTAATGTGAACTCCCGCAATAACCCCCTGCAACGTCCTCTTCCACCGCCACCGTCGAGAGTAAGAGCAGGACCAAGCAACAACAATCACCGTCCTCTTCCACCCCCACCGTCAAGAGCTCCTTTTAATGTCCAACACGACACTCACCGTTCTCCTCTTCCTTCAATGCCACCGTCCAGGCCGAATTCCGACTCTCAGAATGCTCGCTTTCCGTCTCCGCCCTCGTCGCCACCGTTATCTCGTCGGCAGCATTTTGGTTACGACACGACGTCGTCTTCCTCATCGGCTTCCTTCCGAGGCTGTTGCTGCTGCCTCTGCCTCCTCTTCTCCTTCATCGCTCTCCTCGCTCTCGCGATCGTCCTCGTCGTCGTTCTCGCCGTCAAGCCTAAGAAGCCTCAATTCGATCTCCAGCGAGTCGGTGTTCAATATATGGGGATAACCACTCCGAATCTCTTCTCCTTATCCTCCGCCGATTCACAGACCGTGACAACGCCGACGCCGACAACGACCTCCGCAGCGCTATCGCTCAACATTCGATTGCTGTTCACGGCAGTGAATCCAAACAAGGTCGGAATCAAATACGGGAATTCAAGGTTCACAGTGATGTACCGCGGGATTCCGCTAGGAAAAGCAATAGTGCCTGGATTTTACCAAGAGGCGCACAGCCAGAGAGAAGTGGAGGCAATGATCGCCGTCGATCGAGTGAATCTACTTCAGGCAGACGCCGCCGATTTGATCAGAGACGCGTCGTTGAACGATCGAGTGGAGCTGAGGGTTTTGGGCGAAGTTGGCGCCAGGATCCGCGTATTGGAGTTCGATTCTCCCGGCGTTCAGGTGTCGGTGGATTGCTCGATAGTGATAAGTCCAAGGAATCAGTCGTTGACTTCGAAGCAATGTGGATTTGATGGGTTCAGCTTATGA ATGGAGGAGATGACGTCACGGCCTAATGTGAACTCCCGCAATAACCCCCTGCAACGTCCTCTTCCACCGCCACCGTCGAGAGTAAGAGCAGGACCAAGCAACAACAATCACCGTCCTCTTCCACCCCCACCGTCAAGAGCTCCTTTTAATGTCCAACACGACACTCACCGTTCTCCTCTTCCTTCAATGCCACCGTCCAGGCCGAATTCCGACTCTCAGAATGCTCGCTTTCCGTCTCCGCCCTCGTCGCCACCGTTATCTCGTCGGCAGCATTTTGGTTACGACACGACGTCGTCTTCCTCATCGGCTTCCTTCCGAGGCTGTTGCTGCTGCCTCTGCCTCCTCTTCTCCTTCATCGCTCTCCTCGCTCTCGCGATCGTCCTCGTCGTCGTTCTCGCCGTCAAGCCTAAGAAGCCTCAATTCGATCTCCAGCGAGTCGGTGTTCAATATATGGGGATAACCACTCCGAATCTCTTCTCCTTATCCTCCGCCGATTCACAGACCGTGACAACGCCGACGCCGACAACGACCTCCGCAGCGCTATCGCTCAACATTCGATTGCTGTTCACGGCAGTGAATCCAAACAAGGTCGGAATCAAATACGGGAATTCAAGGTTCACAGTGATGTACCGCGGGATTCCGCTAGGAAAAGCAATAGTGCCTGGATTTTACCAAGAGGCGCACAGCCAGAGAGAAGTGGAGGCAATGATCGCCGTCGATCGAGTGAATCTACTTCAGGCAGACGCCGCCGATTTGATCAGAGACGCGTCGTTGAACGATCGAGTGGAGCTGAGGGTTTTGGGCGAAGTTGGCGCCAGGATCCGCGTATTGGAGTTCGATTCTCCCGGCGTTCAGGTGTCGGTGGATTGCTCGATAGTGATAAGTCCAAGGAATCAGTCGTTGACTTCGAAGCAATGTGGATTTGATGGGTTCAGCTTATGA MEEMTSRPNVNSRNNPLQRPLPPPPSRVRAGPSNNNHRPLPPPPSRAPFNVQHDTHRSPLPSMPPSRPNSDSQNARFPSPPSSPPLSRRQHFGYDTTSSSSSASFRGCCCCLCLLFSFIALLALAIVLVVVLAVKPKKPQFDLQRVGVQYMGITTPNLFSLSSADSQTVTTPTPTTTSAALSLNIRLLFTAVNPNKVGIKYGNSRFTVMYRGIPLGKAIVPGFYQEAHSQREVEAMIAVDRVNLLQADAADLIRDASLNDRVELRVLGEVGARIRVLEFDSPGVQVSVDCSIVISPRNQSLTSKQCGFDGFSL
BLAST of Carg08172-RA vs. NCBI nr
Match: XP_022942979.1 (uncharacterized protein LOC111447854 [Cucurbita moschata] >XP_022942980.1 uncharacterized protein LOC111447854 [Cucurbita moschata] >XP_022942981.1 uncharacterized protein LOC111447854 [Cucurbita moschata] >XP_022942983.1 uncharacterized protein LOC111447854 [Cucurbita moschata] >XP_022942984.1 uncharacterized protein LOC111447854 [Cucurbita moschata]) HSP 1 Score: 329.3 bits (843), Expect = 1.4e-86 Identity = 312/313 (99.68%), Postives = 312/313 (99.68%), Query Frame = 0
BLAST of Carg08172-RA vs. NCBI nr
Match: XP_022981995.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima] >XP_022982003.1 proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima] >XP_022982009.1 proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima] >XP_022982017.1 proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima]) HSP 1 Score: 325.5 bits (833), Expect = 2.0e-85 Identity = 308/313 (98.40%), Postives = 308/313 (98.40%), Query Frame = 0
BLAST of Carg08172-RA vs. NCBI nr
Match: XP_023517250.1 (uncharacterized protein LOC111781071 [Cucurbita pepo subsp. pepo] >XP_023517259.1 uncharacterized protein LOC111781071 [Cucurbita pepo subsp. pepo] >XP_023517266.1 uncharacterized protein LOC111781071 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 320.1 bits (819), Expect = 8.4e-84 Identity = 309/315 (98.10%), Postives = 309/315 (98.10%), Query Frame = 0
BLAST of Carg08172-RA vs. NCBI nr
Match: XP_004140800.1 (PREDICTED: proline-rich receptor-like protein kinase PERK10 [Cucumis sativus] >KGN57549.1 hypothetical protein Csa_3G209460 [Cucumis sativus]) HSP 1 Score: 273.9 bits (699), Expect = 6.9e-70 Identity = 168/175 (96.00%), Postives = 171/175 (97.71%), Query Frame = 0
BLAST of Carg08172-RA vs. NCBI nr
Match: XP_008456109.1 (PREDICTED: proline-rich receptor-like protein kinase PERK10 [Cucumis melo]) HSP 1 Score: 273.9 bits (699), Expect = 6.9e-70 Identity = 161/175 (92.00%), Postives = 164/175 (93.71%), Query Frame = 0
BLAST of Carg08172-RA vs. TAIR10
Match: AT2G01080.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) HSP 1 Score: 209.5 bits (532), Expect = 2.9e-54 Identity = 108/175 (61.71%), Postives = 126/175 (72.00%), Query Frame = 0
BLAST of Carg08172-RA vs. TAIR10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) HSP 1 Score: 43.5 bits (101), Expect = 2.8e-04 Identity = 30/116 (25.86%), Postives = 54/116 (46.55%), Query Frame = 0
BLAST of Carg08172-RA vs. TrEMBL
Match: tr|A0A1S3C355|A0A1S3C355_CUCME (proline-rich receptor-like protein kinase PERK10 OS=Cucumis melo OX=3656 GN=LOC103496146 PE=4 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 4.6e-70 Identity = 161/175 (92.00%), Postives = 164/175 (93.71%), Query Frame = 0
BLAST of Carg08172-RA vs. TrEMBL
Match: tr|A0A0A0L9B0|A0A0A0L9B0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209460 PE=4 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 4.6e-70 Identity = 168/175 (96.00%), Postives = 171/175 (97.71%), Query Frame = 0
BLAST of Carg08172-RA vs. TrEMBL
Match: tr|A0A1U8LQD8|A0A1U8LQD8_GOSHI (uncharacterized protein LOC107928886 OS=Gossypium hirsutum OX=3635 GN=LOC107928886 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60 Identity = 126/175 (72.00%), Postives = 137/175 (78.29%), Query Frame = 0
BLAST of Carg08172-RA vs. TrEMBL
Match: tr|A0A0D2QY00|A0A0D2QY00_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G001400 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60 Identity = 141/175 (80.57%), Postives = 152/175 (86.86%), Query Frame = 0
BLAST of Carg08172-RA vs. TrEMBL
Match: tr|A0A2P5VSS0|A0A2P5VSS0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38867 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60 Identity = 126/175 (72.00%), Postives = 137/175 (78.29%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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