Carg07975 (gene) Silver-seed gourd

Overview
NameCarg07975
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_050 : 7703 .. 9570 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCGGGTGCTCTACGGTTGTGCTCTTGTCTTGGTTTCTCCCGCCAAGATCTCATGTTTTAACGGTCTTCTTCATCCAACATTTTGTCCTTTCCCTTCTCGTGTAACCTTCGTCAATTGTAACTTAACTTTGTCCGTCGGTTACAGAAGCAATCCGATCGTGGCCGAGTATGTATGCCTAGATCCGATAGCGGAATTTGTAGTAGTCGTAAGTTTTTCTCTCCAATATAGCGCTTTATCTGCTCAAATTGATTCCGGTTTTGCGTTGATTTATATGTTTGGTTGTTTTTGGGAGGAAACCCAGAGATTTAAGGAGTAGGTGTCGGAGAAGCTAGCGAAGGATCGTGAGACGATTGTGGAGGTTTGCTCGAAGTTTATTGTTTTTTATTGATTTTCGAAACTTTTAGGTTGAAAATGTTGTGATTCGTTCGTTGGGTGATTTGAATTTTGGATGCCCTTGTTTTGGGTTGAAGAATATGTCTGAGCAGCTACCTGTTTGAGAAAATTTGTGAATGAGGCGACTGTTTGATTGCAGAGTTATTTGAGTTTTTTTTGTGCTTTTGAGTTATCATGGCTTGAGAATTATTTCCCATAGGTTCAATAATTAAGCCCTGAGAAAACATCGGACCTGCCAATATAGCTACAGAACTAGTACTGTTTCCAAGACAGCTTCCATTAATTGCGCAGAAATTTTCTGAATGTTTGACCAGTGCTGCCATTATTGATATGCTTCTTGTATTTTGATTTTTCAAATCAAAACTGAAATGAAGATTCCAATTTGAATTCAGTTGTCCGAATTTATGTGATAGTCTTAACATGAAAGTATGTACTTCCAAGTTGTAATATCAGATATTTGGTGAATATTGCATGTGGAGTACGGAGGTTCTGGGACATTATTGGTGGAGCCTTTCACCCAAAATGGTTATTGCTCTCGATGAGGGGAAACTACCAGGAGCGCCATTTGCCTCAAGAACTTCGATCCTTTCAGCTCAAAATCATCTAGTTCATGATTGGAATTCGAAAAGAGGGCTTAAATGATCTGTTTTTTCTAGTTACATTTGTGAAGATCCTTGTATTTTGTATTGAGATTTTCTGTTCTTTTTGTTGTTGCAGGCAGATGATGAAGGAAAAACTGTATGCTTCATCACAAAGATTCTCCAATACAGTGTCAATTCCATTGATATCTTTGTTGCTATACACATGACTTATTTCTCTCAATACATGAATCATTCTGGGGCTGTGGTTTTACACTGAATTGGAAATTTGGATGCTCATTTTCATGCTCTATATGAATCTTCTAACTTCCACAATGAGCATCTTAAATCAAGCTCCACTATTCTGTCGTATCAACCACACTTGCTTGTCATGATCAAGAAAAAAGGGTTGAACATAAAATCAGCTGGCAGCTTCAGAAATGCTCTGCAATGATGGTCTCCAAGCCTTTGGCCTCGCTGCAGTGGCGTTTGCTGCTGGTGTTCTGATGCGATGTCTTTCATGTTTGACTACCTGCAATGTTTATTTCACAGAGATTATTGGTATGATTTTATCTTCAAAAAATCACTTCAAGTTGCCAAGGATCTCAATCACCATCATATTTGACTTTTTTCATTTTCTTTTGCAGTCATCTGCTGTGATTCAAAAGGAAACAAATCTGGTTACCTGCTGGCTATTTTCAGTCTCATCTCCGGCAGCCGGCTTCTCCGGCTTCCTCTCCGACTCCGGCAATTGCTTCTTGGATTTTGCATACTTTTTAGCTCGCAACACCTTTATAACCTCTGCAAATTCCAACAAAACGTCAAAAGGGCTGAACTAAAACAGAAGGAAATGAAAGAACTTCAAAAAGATCAAAGAGGCACCATACCCTGA

mRNA sequence

ATGGGGCGGGTGCTCTACGGTTGTGCTCTTGTCTTGGTTTCTCCCGCCAAGATCTCATGTTTTAACGGTCTTCTTCATCCAACATTTTGTCCTTTCCCTTCTCGTGTAACCTTCGTCAATTGTAACTTAACTTTGTCCGTCGGTTACAGAAGCAATCCGATCGTGGCCGAGTATGTATGCCTAGATCCGATAGCGGAATTTGTAGTAGTCGTAAGTTTTTCTCTCCAATATAGCGCTTTATCTGCTCAAATTGATTCCGAAAACATCGGACCTGCCAATATAGCTACAGAACTAGTACTGTTTCCAAGACAGCTTCCATTAATTGCGCAGAAATTTTCTGAATGTTTGACCAGTGCTGCCATTATTGATATGCTTCTTATATTTGGTGAATATTGCATGTGGAGTACGGAGGTTCTGGGACATTATTGGTGGAGCCTTTCACCCAAAATGGTTATTGCTCTCGATGAGGGGAAACTACCAGGAGCGCCATTTGCCTCAAGAACTTCGATCCTTTCAGCTCAAAATCATCTAGCAGATGATGAAGGAAAAACTGTATGCTTCATCACAAAGATTCTCCAATACAGTGTCAATTCCATTGATATCTTTGTTGCTATACACATGACTTATTTCTCTCAATACATGAATCATTCTGGGGCTGTGCTGGCAGCTTCAGAAATGCTCTGCAATGATGGTCTCCAAGCCTTTGGCCTCGCTGCAGTGGCGTTTGCTGCTGGTGTTCTGATGCGATGTCTTTCATGTTTGACTACCTGCAATGTTTATTTCACAGAGATTATTGTCATCTGCTGTGATTCAAAAGGAAACAAATCTGGTTACCTGCTGGCTATTTTCAGTCTCATCTCCGGCAGCCGGCTTCTCCGGCTTCCTCTCCGACTCCGGCAATTGCTTCTTGGATTTTGCATACTTTTTAGCTCGCAACACCTTTATAACCTCTGCAAATTCCAACAAAACGTCAAAAGGGCTGAACTAAAACAGAAGGAAATGAAAGAACTTCAAAAAGATCAAAGAGGCACCATACCCTGA

Coding sequence (CDS)

ATGGGGCGGGTGCTCTACGGTTGTGCTCTTGTCTTGGTTTCTCCCGCCAAGATCTCATGTTTTAACGGTCTTCTTCATCCAACATTTTGTCCTTTCCCTTCTCGTGTAACCTTCGTCAATTGTAACTTAACTTTGTCCGTCGGTTACAGAAGCAATCCGATCGTGGCCGAGTATGTATGCCTAGATCCGATAGCGGAATTTGTAGTAGTCGTAAGTTTTTCTCTCCAATATAGCGCTTTATCTGCTCAAATTGATTCCGAAAACATCGGACCTGCCAATATAGCTACAGAACTAGTACTGTTTCCAAGACAGCTTCCATTAATTGCGCAGAAATTTTCTGAATGTTTGACCAGTGCTGCCATTATTGATATGCTTCTTATATTTGGTGAATATTGCATGTGGAGTACGGAGGTTCTGGGACATTATTGGTGGAGCCTTTCACCCAAAATGGTTATTGCTCTCGATGAGGGGAAACTACCAGGAGCGCCATTTGCCTCAAGAACTTCGATCCTTTCAGCTCAAAATCATCTAGCAGATGATGAAGGAAAAACTGTATGCTTCATCACAAAGATTCTCCAATACAGTGTCAATTCCATTGATATCTTTGTTGCTATACACATGACTTATTTCTCTCAATACATGAATCATTCTGGGGCTGTGCTGGCAGCTTCAGAAATGCTCTGCAATGATGGTCTCCAAGCCTTTGGCCTCGCTGCAGTGGCGTTTGCTGCTGGTGTTCTGATGCGATGTCTTTCATGTTTGACTACCTGCAATGTTTATTTCACAGAGATTATTGTCATCTGCTGTGATTCAAAAGGAAACAAATCTGGTTACCTGCTGGCTATTTTCAGTCTCATCTCCGGCAGCCGGCTTCTCCGGCTTCCTCTCCGACTCCGGCAATTGCTTCTTGGATTTTGCATACTTTTTAGCTCGCAACACCTTTATAACCTCTGCAAATTCCAACAAAACGTCAAAAGGGCTGAACTAAAACAGAAGGAAATGAAAGAACTTCAAAAAGATCAAAGAGGCACCATACCCTGA

Protein sequence

MGRVLYGCALVLVSPAKISCFNGLLHPTFCPFPSRVTFVNCNLTLSVGYRSNPIVAEYVCLDPIAEFVVVVSFSLQYSALSAQIDSENIGPANIATELVLFPRQLPLIAQKFSECLTSAAIIDMLLIFGEYCMWSTEVLGHYWWSLSPKMVIALDEGKLPGAPFASRTSILSAQNHLADDEGKTVCFITKILQYSVNSIDIFVAIHMTYFSQYMNHSGAVLAASEMLCNDGLQAFGLAAVAFAAGVLMRCLSCLTTCNVYFTEIIVICCDSKGNKSGYLLAIFSLISGSRLLRLPLRLRQLLLGFCILFSSQHLYNLCKFQQNVKRAELKQKEMKELQKDQRGTIP
Homology
[Close]
BLAST of Carg07975 vs. NCBI nr
Match: XP_023553226.1 (uncharacterized protein LOC111810699 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 114/221 (51.58%), Postives = 124/221 (56.11%), Query Frame = 0 

Query: 1   MGRVLYGCALVLVSPAKISCFNGLLHPTFCPFPSRVTFVNCNLTLSVGYRSNPIVAEYVC 60
           MGRVLYG A+VLVSPAKISCFNGLLHPTFCPFPSRVTFVNCNLTLSVGYRSNPIVAEYVC
Sbjct: 1   MGRVLYGWAMVLVSPAKISCFNGLLHPTFCPFPSRVTFVNCNLTLSVGYRSNPIVAEYVC 60

Query: 61  LDPIAEFVVVVSFSLQYSALSAQIDSENIGPANIATELVLFPRQLPLIAQKFSECLTSAA 120
           LDP+AEFVV+ +                                     Q+F E      
Sbjct: 61  LDPVAEFVVIET-------------------------------------QRFKE------ 120

Query: 121 IIDMLLIFGEYCMWSTEVLGHYWWSLSPKMVIALDEGKLPGAPFASRTSILSAQNHLADD 180
                                    +S K+                R +I+      ADD
Sbjct: 121 ------------------------QVSEKLA-------------KDRETIVE-----ADD 136

Query: 181 EGKTVCFITKILQYSVNSIDIFVAIHMTYFSQYMNHSGAVL 222
           EGKTVCFITKILQYSVN IDIFVAI MTYFSQYMNHSGAV+
Sbjct: 181 EGKTVCFITKILQYSVNFIDIFVAIQMTYFSQYMNHSGAVV 136

[Close]
BLAST of Carg07975 vs. NCBI nr
Match: XP_022151033.1 (protein PLASTID REDOX INSENSITIVE 2-like [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 6.2e-19
Identity = 76/182 (41.76%), Postives = 95/182 (52.20%), Query Frame = 0 

Query: 5   LYGCALVLVS---PAKISCFNGLLHPTFCPFPSRV-TFVNCNLTLSVGYRSNPIVAEYVC 64
           L+GCAL+L S   PAKI+CFNGLLHPTF PFPS V  FVNC  T S  YR+ P+  ++V 
Sbjct: 63  LHGCALLLASAVPPAKITCFNGLLHPTFSPFPSLVKPFVNCTSTSSFSYRATPLPPKFVY 122

Query: 65  LDPIAEFVVVVSFSLQYSALSAQIDSENIGPANIATELVLFPRQLPLIAQKFSECLTSAA 124
            DPI EF    +   +   LS +          +A +   F   L  + +  S+      
Sbjct: 123 PDPIPEFAEAETRKFR-EYLSKK----------LAEDRATFGNDLDFVVEVCSK------ 182

Query: 125 IIDMLLIFGEYCMWSTEVLGHYWWSLSP--KMVIALDEGKLPGAPFASRTSILSAQNHLA 181
                 IFGEY     E  G     + P   M IAL+E KLPGA  A+RTS+L AQNHL 
Sbjct: 183 ------IFGEYL--HVEYGGPETLLVEPFTNMFIALNERKLPGASLAARTSLLWAQNHLD 219

[Close]
BLAST of Carg07975 vs. NCBI nr
Match: XP_008446243.1 (PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-16
Identity = 75/182 (41.21%), Postives = 94/182 (51.65%), Query Frame = 0 

Query: 6   YGCALVL---VSPAKISCFNGLLHPTFCPFPSRV-TFVNCNLTLSVGYRSNPIVAEYVCL 65
           YGCALV    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPIAEFVVVVSFSLQYSALSAQIDSENIGPANIATELVLFPRQLPLIAQKFSECLTS--A 125
           +PI EF              A+++++             F  QL     K  E   +   
Sbjct: 64  EPIPEF--------------AEVETQK------------FKEQLSKKLAKDRETFGNDFD 123

Query: 126 AIIDML-LIFGEYCMWSTEVLGHYWWSLSPKMVIALDEGKLPGAPFASRTSILSAQNHLA 181
           +++D+   IFGEY        G         M IAL+E KLPGAP A+RTS+L AQN+L 
Sbjct: 124 SVVDVCSKIFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLD 159

[Close]
BLAST of Carg07975 vs. NCBI nr
Match: XP_004135230.1 (PREDICTED: uncharacterized protein LOC101211725 isoform X1 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 74/182 (40.66%), Postives = 92/182 (50.55%), Query Frame = 0 

Query: 6   YGCALVL---VSPAKISCFNGLLHPTFCPFPSRV-TFVNCNLTLSVGYRSNPIVAEYVCL 65
           YG ALV    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGGALVSAVEVSPAKIAGFNGLHYPTFFLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPIAEFVVVVSFSLQYSALSAQIDSENIGPANIATELVLFPRQLPLIAQKFSECLTS--A 125
           +PI EF              A+++++             F  QL     K  E   +   
Sbjct: 64  EPIPEF--------------AEVETQK------------FKEQLSKKLAKDRETFGNDFD 123

Query: 126 AIIDML-LIFGEYCMWSTEVLGHYWWSLSPKMVIALDEGKLPGAPFASRTSILSAQNHLA 181
           +++D+   IFGEY        G         M IAL+E KL GAP A+RTS+L AQNHL 
Sbjct: 124 SVVDVCSKIFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLSGAPLAARTSLLWAQNHLD 159

[Close]
BLAST of Carg07975 vs. NCBI nr
Match: XP_023513712.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513720.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-14
Identity = 74/184 (40.22%), Postives = 88/184 (47.83%), Query Frame = 0 

Query: 6   YGCALV---LVSPAKISCFNGLLHPTFCPFPSRVT----FVNCNLTLSVGYRSNPIVAEY 65
           Y C LV    VSPAK +CFNGL +PTF P  S  +    FVNC LT S+ YR+ P  A  
Sbjct: 4   YSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSSSSLVKPFVNCTLTSSIIYRATPATASC 63

Query: 66  VCLDPIAEFVVVVS--FSLQYSALSAQIDSENIGPANIATELVLFPRQLPLIAQKFSECL 125
           V  DPI EF  V +  F  Q S   A+ D E  G  N    +V        +  KF +  
Sbjct: 64  VYHDPIPEFAEVETKKFKEQLSKKLAK-DRETFG--NDLDSVV-------EVCSKFEQ-- 123

Query: 126 TSAAIIDMLLIFGEYCMWSTEVLGHYWWSLSPKMVIALDEGKLPGAPFASRTSILSAQNH 181
                     IF EY        G         M IAL+E KLPGAP A+RTS+L AQN+
Sbjct: 124 ----------IFSEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNY 165

[Close]
BLAST of Carg07975 vs. TrEMBL
Match: tr|A0A1S3BEK8|A0A1S3BEK8_CUCME (uncharacterized protein LOC103489034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489034 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 75/182 (41.21%), Postives = 94/182 (51.65%), Query Frame = 0 

Query: 6   YGCALVL---VSPAKISCFNGLLHPTFCPFPSRV-TFVNCNLTLSVGYRSNPIVAEYVCL 65
           YGCALV    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPIAEFVVVVSFSLQYSALSAQIDSENIGPANIATELVLFPRQLPLIAQKFSECLTS--A 125
           +PI EF              A+++++             F  QL     K  E   +   
Sbjct: 64  EPIPEF--------------AEVETQK------------FKEQLSKKLAKDRETFGNDFD 123

Query: 126 AIIDML-LIFGEYCMWSTEVLGHYWWSLSPKMVIALDEGKLPGAPFASRTSILSAQNHLA 181
           +++D+   IFGEY        G         M IAL+E KLPGAP A+RTS+L AQN+L 
Sbjct: 124 SVVDVCSKIFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLD 159

[Close]
BLAST of Carg07975 vs. TrEMBL
Match: tr|A0A1S3BF95|A0A1S3BF95_CUCME (uncharacterized protein LOC103489034 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103489034 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 49/91 (53.85%), Postives = 55/91 (60.44%), Query Frame = 0 

Query: 6  YGCALVL---VSPAKISCFNGLLHPTFCPFPSRV-TFVNCNLTLSVGYRSNPIVAEYVCL 65
          YGCALV    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4  YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66 DPIAEFVVVVS--FSLQYSALSAQIDSENIG 91
          +PI EF  V +  F  Q S   A+ D E  G
Sbjct: 64 EPIPEFAEVETQKFKEQLSKKLAK-DRETFG 93

[Close]
BLAST of Carg07975 vs. TrEMBL
Match: tr|A0A1S3BEL0|A0A1S3BEL0_CUCME (uncharacterized protein LOC103489034 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489034 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 49/91 (53.85%), Postives = 55/91 (60.44%), Query Frame = 0 

Query: 6  YGCALVL---VSPAKISCFNGLLHPTFCPFPSRV-TFVNCNLTLSVGYRSNPIVAEYVCL 65
          YGCALV    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4  YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66 DPIAEFVVVVS--FSLQYSALSAQIDSENIG 91
          +PI EF  V +  F  Q S   A+ D E  G
Sbjct: 64 EPIPEFAEVETQKFKEQLSKKLAK-DRETFG 93

The following BLAST results are available for this feature:
BLAST of Carg07975 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023553226.11.2e-4351.58uncharacterized protein LOC111810699 [Cucurbita pepo subsp. pepo][more]
XP_022151033.16.2e-1941.76protein PLASTID REDOX INSENSITIVE 2-like [Momordica charantia][more]
XP_008446243.11.7e-1641.21PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo][more]
XP_004135230.11.6e-1440.66PREDICTED: uncharacterized protein LOC101211725 isoform X1 [Cucumis sativus][more]
XP_023513712.13.5e-1440.22protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 [Cucurbita pe... [more]
BLAST of Carg07975 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg07975 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg07975 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BEK8|A0A1S3BEK8_CUCME1.1e-1641.21uncharacterized protein LOC103489034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BF95|A0A1S3BF95_CUCME2.9e-0953.85uncharacterized protein LOC103489034 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BEL0|A0A1S3BEL0_CUCME2.9e-0953.85uncharacterized protein LOC103489034 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07975-RACarg07975-RAmRNA