CmaCh04G015910 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G015910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Dna-directed rna polymerase subunit a
Location	Cma_Chr04 : 8046324 .. 8047350 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATAACCCCATCCAATGGCGTCCTACAGTTGCGTTCTGGTTTCGGCCATTGCAGTTTCTCCTGCCAAGACTACATGCTTCAACGGACTTAATTATCCAACATTTTCCCCTTCTTCTTCCCTTGGAAAGCCCTTTGTTAATTGTACCTTAACTTCTTCCATCATATACAGAGCAACTCCGGCCACGGCCAGCTGTGTTTACCATGATCCGATACCGGAATTTGCTGAAGTTGTAAGTTTCTTGCGACGTAGCTCCTTTGTTTGCTTAAATTGATTCCGGTTTTGTGTTATGTGATCGCGTTGATTAATTCATTTGGTTGTTTTTCGCAGGAAACCAGGAAATTTAAGGAGCAGTTATCGAAGAAGCTAGCGAAGGATCGCGAGACATTTGGGAACGACCTGGATTCGGTTGTGGAGGTTTGCTCAAAGGTAATCATTGTTATAGAAGTAAGAGGTTGTAATTTTCTAGTTTGAATCCCTGATTTCGGTTGAAGAATGTGTCTGAATCAGATGAGGCGATTGTTTGCTTAGAGAGTTAGTTTAGTTTAATCGTGCTTTTGCCTTCAAGTGTTTCCATGGTTTGAGATGAATAATTGGAGACCTGAGGAAGCATCAGACCTGCCTATAGAGCTACAGAACGATCACTATTTCCAAGACAGCTTCATTAATTGCGTAAAATTGTTCTGAATGTTTGACCTATGCTGCCATTATTGATATTCTTCTTGCATTTTGATTTTTTCAAATCAGAACTGAACGAATATTCCAATTTGAATTCAGATGTCCGAATTTATGTGAGCTTAATATGAATGTACTTTGCAAGTTTTGAGCAGATATTTAGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTAAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCACAAGAACTTCGCTTCTATGGGCTCAAAACTATCTAGATCACGATTGGAACATTTGGATCTCAAAACGAGGGCTCAAATGA

mRNA sequence

GGATAACCCCATCCAATGGCGTCCTACAGTTGCGTTCTGGTTTCGGCCATTGCAGTTTCTCCTGCCAAGACTACATGCTTCAACGGACTTAATTATCCAACATTTTCCCCTTCTTCTTCCCTTGGAAAGCCCTTTGTTAATTGTACCTTAACTTCTTCCATCATATACAGAGCAACTCCGGCCACGGCCAGCTGTGTTTACCATGATCCGATACCGGAATTTGCTGAAGTTGAAACCAGGAAATTTAAGGAGCAGTTATCGAAGAAGCTAGCGAAGGATCGCGAGACATTTGGGAACGACCTGGATTCGGTTGTGGAGGTTTGCTCAAAGATATTTAGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTAAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCACAAGAACTTCGCTTCTATGGGCTCAAAACTATCTAGATCACGATTGGAACATTTGGATCTCAAAACGAGGGCTCAAATGA

Coding sequence (CDS)

ATGGCGTCCTACAGTTGCGTTCTGGTTTCGGCCATTGCAGTTTCTCCTGCCAAGACTACATGCTTCAACGGACTTAATTATCCAACATTTTCCCCTTCTTCTTCCCTTGGAAAGCCCTTTGTTAATTGTACCTTAACTTCTTCCATCATATACAGAGCAACTCCGGCCACGGCCAGCTGTGTTTACCATGATCCGATACCGGAATTTGCTGAAGTTGAAACCAGGAAATTTAAGGAGCAGTTATCGAAGAAGCTAGCGAAGGATCGCGAGACATTTGGGAACGACCTGGATTCGGTTGTGGAGGTTTGCTCAAAGATATTTAGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTAAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCACAAGAACTTCGCTTCTATGGGCTCAAAACTATCTAGATCACGATTGGAACATTTGGATCTCAAAACGAGGGCTCAAATGA

Protein sequence

MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSLGKPFVNCTLTSSIIYRATPATASCVYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWISKRGLK

Homology

[Close]

BLAST of CmaCh04G015910 vs. TrEMBL
Match: A0A0A0KQC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603300 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-53
Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 1


Query: 52  RATPATASCVYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYL 111
           RATP TAS VY +PIPEFAEVET+KFKEQLSKKLAKDRETFGND DSVV+VCSKIF EYL
Sbjct: 43  RATPITASYVYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKIFGEYL 102

Query: 112 HVEYGGPGTLLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWISKRGLK 171
           HVEYGGPGTL+VEPFTNMFIALNERKL GAPLA RTSLLWAQN+LD+DWNIW SK G K
Sbjct: 103 HVEYGGPGTLIVEPFTNMFIALNERKLSGAPLAARTSLLWAQNHLDNDWNIWNSKGGFK 161

[Close]

BLAST of CmaCh04G015910 vs. TrEMBL
Match: A0A061E6U7_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_010229 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.7e-42
Identity = 93/169 (55.03%), Postives = 121/169 (71.60%), Query Frame = 1


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSLGKPFVNCTLTSSIIYRATPATAS- 60
           MAS S V   A+ ++PAKT     L  P  +       P  + +L+S  ++  +P  AS 
Sbjct: 1   MASSSWVSTRAL-LTPAKTPTSTTLFLPRPACLILHSTPHPSLSLSSPKLF-LSPLPASP 60

Query: 61  ---CVYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYG 120
               VY DPIPEFAE ET+KFK +L KKL+KD++TFG+DLD+V+EVC ++F+ +LH EYG
Sbjct: 61  PQKYVYPDPIPEFAEAETQKFKSELFKKLSKDKDTFGDDLDAVIEVCVEVFNNFLHKEYG 120

Query: 121 GPGTLLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWIS 166
           GPGTLLVEPFT+MF+AL E+KLPGAP+A R SLLWAQNY+DHDW +W S
Sbjct: 121 GPGTLLVEPFTDMFVALKEKKLPGAPVAARASLLWAQNYVDHDWEVWNS 167

[Close]

BLAST of CmaCh04G015910 vs. TrEMBL
Match: A0A061E7M7_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_010229 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.7e-42
Identity = 93/169 (55.03%), Postives = 121/169 (71.60%), Query Frame = 1


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSLGKPFVNCTLTSSIIYRATPATAS- 60
           MAS S V   A+ ++PAKT     L  P  +       P  + +L+S  ++  +P  AS 
Sbjct: 13  MASSSWVSTRAL-LTPAKTPTSTTLFLPRPACLILHSTPHPSLSLSSPKLF-LSPLPASP 72

Query: 61  ---CVYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYG 120
               VY DPIPEFAE ET+KFK +L KKL+KD++TFG+DLD+V+EVC ++F+ +LH EYG
Sbjct: 73  PQKYVYPDPIPEFAEAETQKFKSELFKKLSKDKDTFGDDLDAVIEVCVEVFNNFLHKEYG 132

Query: 121 GPGTLLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWIS 166
           GPGTLLVEPFT+MF+AL E+KLPGAP+A R SLLWAQNY+DHDW +W S
Sbjct: 133 GPGTLLVEPFTDMFVALKEKKLPGAPVAARASLLWAQNYVDHDWEVWNS 179

[Close]

BLAST of CmaCh04G015910 vs. TrEMBL
Match: A0A0D2UY70_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G344500 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 97/182 (53.30%), Postives = 119/182 (65.38%), Query Frame = 1


Query: 1   MASYSCVLVSAIAVS-PAKTTCFNGLNY-------------PTFSPSSSLG---KPFVNC 60
           MAS SC LVS    S PAK      L               P+FS  SS     KPF++ 
Sbjct: 1   MASSSCSLVSIHPPSTPAKIPTSTILILRNAGLILNPPPPPPSFSTLSSKPISVKPFLSA 60

Query: 61  TLTSSIIYRATPATASCVYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVC 120
              S         +   VYHDPIP+FAE ET+KFK +L  KL+KD++ FG+DLDSV++VC
Sbjct: 61  LRASH--------SQKYVYHDPIPKFAEAETQKFKAELFNKLSKDKDKFGDDLDSVIDVC 120

Query: 121 SKIFSEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIW 166
            KIF+++LH EYGGPGTLLVEPFT+MF+AL E+KLPGAP+A R SLLWAQN+LDHDW +W
Sbjct: 121 VKIFNDFLHNEYGGPGTLLVEPFTDMFVALKEKKLPGAPVAARASLLWAQNHLDHDWEVW 174

[Close]

BLAST of CmaCh04G015910 vs. TrEMBL
Match: B9SZI9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0394320 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-40
Identity = 89/156 (57.05%), Postives = 110/156 (70.51%), Query Frame = 1


Query: 12  IAVSPAKTTCFNGL--NYPTFSPSSSLGKPFVNCTLTSSIIYRATPATASCVYHDPIPEF 71
           + +SPAK +  + L    P+ S S    KP       SS    ATP+  + VY DPIPEF
Sbjct: 9   LLLSPAKLSISSTLILRAPSLSFSILRAKPI------SSNTVGATPSFQNYVYSDPIPEF 68

Query: 72  AEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGPGTLLVEPFTNM 131
           A+ ET KF+ ++ KKL+KD++TFG DLD VV+VCS+IFS++LH EYGGPGTLLVEPFT+M
Sbjct: 69  AQSETEKFRAEILKKLSKDKQTFGGDLDKVVDVCSEIFSDFLHKEYGGPGTLLVEPFTDM 128

Query: 132 FIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWIS 166
            IAL E+ LPGAPLA R SLLWAQNY+D DW  W S
Sbjct: 129 LIALKEKNLPGAPLAARESLLWAQNYVDQDWEAWNS 158

[Close]

BLAST of CmaCh04G015910 vs. TAIR10
Match: AT1G10522.1 (AT1G10522.1 unknown protein)

HSP 1 Score: 121.3 bits (303), Expect = 5.7e-28
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 62  YHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGPGTL 121
           + DPIPEFAE ET KF++ +  KL+K R+ F + +D +V VC++IF  +L  EYGGPGTL
Sbjct: 75  FPDPIPEFAEAETEKFRDHMLNKLSK-RDLFEDSVDEIVGVCTEIFETFLRSEYGGPGTL 134

Query: 122 LVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIW 164
           LV PF +M   LNER+LPG P A R ++ WAQ+++D DW  W
Sbjct: 135 LVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEW 175

[Close]

BLAST of CmaCh04G015910 vs. NCBI nr
Match: gi|659090864|ref|XP_008446243.1| (PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 2.6e-75
Identity = 142/170 (83.53%), Postives = 149/170 (87.65%), Query Frame = 1


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSLGKPFVNCTLTSSIIYRATPATASC 60
           MA Y C LVSAI VSPAK T FNGL+YPTFS   S  KP VNCTLTSS+IYRATP TAS 
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGPGT 120
           VY +PIPEFAEVET+KFKEQLSKKLAKDRETFGND DSVV+VCSKIF EYLHVEYGGPGT
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKIFGEYLHVEYGGPGT 120

Query: 121 LLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWISKRGLK 171
           L+VEPFTNMFIALNERKLPGAPLA RTSLLWAQNYLD+DWNIW SK G K
Sbjct: 121 LIVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDNDWNIWNSKGGFK 170

[Close]

BLAST of CmaCh04G015910 vs. NCBI nr
Match: gi|449434893|ref|XP_004135230.1| (PREDICTED: uncharacterized protein LOC101211725 isoform X1 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 8.7e-71
Identity = 136/170 (80.00%), Postives = 145/170 (85.29%), Query Frame = 1


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSLGKPFVNCTLTSSIIYRATPATASC 60
           MA Y   LVSA+ VSPAK   FNGL+YPTF    S  KP VNCTLTSS+IYRATP TAS 
Sbjct: 1   MARYGGALVSAVEVSPAKIAGFNGLHYPTFFLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGPGT 120
           VY +PIPEFAEVET+KFKEQLSKKLAKDRETFGND DSVV+VCSKIF EYLHVEYGGPGT
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKIFGEYLHVEYGGPGT 120

Query: 121 LLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWISKRGLK 171
           L+VEPFTNMFIALNERKL GAPLA RTSLLWAQN+LD+DWNIW SK G K
Sbjct: 121 LIVEPFTNMFIALNERKLSGAPLAARTSLLWAQNHLDNDWNIWNSKGGFK 170

[Close]

BLAST of CmaCh04G015910 vs. NCBI nr
Match: gi|700196656|gb|KGN51833.1| (hypothetical protein Csa_5G603300 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 2.2e-53
Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 1


Query: 52  RATPATASCVYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYL 111
           RATP TAS VY +PIPEFAEVET+KFKEQLSKKLAKDRETFGND DSVV+VCSKIF EYL
Sbjct: 43  RATPITASYVYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKIFGEYL 102

Query: 112 HVEYGGPGTLLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWISKRGLK 171
           HVEYGGPGTL+VEPFTNMFIALNERKL GAPLA RTSLLWAQN+LD+DWNIW SK G K
Sbjct: 103 HVEYGGPGTLIVEPFTNMFIALNERKLSGAPLAARTSLLWAQNHLDNDWNIWNSKGGFK 161

[Close]

BLAST of CmaCh04G015910 vs. NCBI nr
Match: gi|590694175|ref|XP_007044535.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 93/169 (55.03%), Postives = 121/169 (71.60%), Query Frame = 1


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSLGKPFVNCTLTSSIIYRATPATAS- 60
           MAS S V   A+ ++PAKT     L  P  +       P  + +L+S  ++  +P  AS 
Sbjct: 13  MASSSWVSTRAL-LTPAKTPTSTTLFLPRPACLILHSTPHPSLSLSSPKLF-LSPLPASP 72

Query: 61  ---CVYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYG 120
               VY DPIPEFAE ET+KFK +L KKL+KD++TFG+DLD+V+EVC ++F+ +LH EYG
Sbjct: 73  PQKYVYPDPIPEFAEAETQKFKSELFKKLSKDKDTFGDDLDAVIEVCVEVFNNFLHKEYG 132

Query: 121 GPGTLLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWIS 166
           GPGTLLVEPFT+MF+AL E+KLPGAP+A R SLLWAQNY+DHDW +W S
Sbjct: 133 GPGTLLVEPFTDMFVALKEKKLPGAPVAARASLLWAQNYVDHDWEVWNS 179

[Close]

BLAST of CmaCh04G015910 vs. NCBI nr
Match: gi|590694178|ref|XP_007044536.1| (Uncharacterized protein isoform 2 [Theobroma cacao])

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 93/169 (55.03%), Postives = 121/169 (71.60%), Query Frame = 1


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSLGKPFVNCTLTSSIIYRATPATAS- 60
           MAS S V   A+ ++PAKT     L  P  +       P  + +L+S  ++  +P  AS 
Sbjct: 1   MASSSWVSTRAL-LTPAKTPTSTTLFLPRPACLILHSTPHPSLSLSSPKLF-LSPLPASP 60

Query: 61  ---CVYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYG 120
               VY DPIPEFAE ET+KFK +L KKL+KD++TFG+DLD+V+EVC ++F+ +LH EYG
Sbjct: 61  PQKYVYPDPIPEFAEAETQKFKSELFKKLSKDKDTFGDDLDAVIEVCVEVFNNFLHKEYG 120

Query: 121 GPGTLLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWIS 166
           GPGTLLVEPFT+MF+AL E+KLPGAP+A R SLLWAQNY+DHDW +W S
Sbjct: 121 GPGTLLVEPFTDMFVALKEKKLPGAPVAARASLLWAQNYVDHDWEVWNS 167

The following BLAST results are available for this feature:

BLAST of CmaCh04G015910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G015910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQC6_CUCSA	1.5e-53	86.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603300 PE=4 SV=1	[more]
A0A061E6U7_THECC	7.7e-42	55.03	Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_010229 PE=4 SV=1	[more]
A0A061E7M7_THECC	7.7e-42	55.03	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_010229 PE=4 SV=1	[more]
A0A0D2UY70_GOSRA	1.1e-40	53.30	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G344500 PE=4 SV=1	[more]
B9SZI9_RICCO	1.9e-40	57.05	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0394320 PE=4 SV=1	[more]

BLAST of CmaCh04G015910 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10522.1	5.7e-28	52.94	unknown protein	[more]

BLAST of CmaCh04G015910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090864\|ref\|XP_008446243.1\|	2.6e-75	83.53	PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo]	[more]
gi\|449434893\|ref\|XP_004135230.1\|	8.7e-71	80.00	PREDICTED: uncharacterized protein LOC101211725 isoform X1 [Cucumis sativus]	[more]
gi\|700196656\|gb\|KGN51833.1\|	2.2e-53	86.55	hypothetical protein Csa_5G603300 [Cucumis sativus]	[more]
gi\|590694175\|ref\|XP_007044535.1\|	1.1e-41	55.03	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|590694178\|ref\|XP_007044536.1\|	1.1e-41	55.03	Uncharacterized protein isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G015910.1	CmaCh04G015910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35987	FAMILY NOT NAMED	coord: 61..170 score: 7.5
None	No IPR available	PANTHER	PTHR35987:SF1	SUBFAMILY NOT NAMED	coord: 61..170 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G015910	Csa5G603300	Cucumber (Chinese Long) v2	cmacuB724
CmaCh04G015910	CSPI05G22950	Wild cucumber (PI 183967)	cmacpiB731
CmaCh04G015910	CmoCh04G016640	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G015910	Cp4.1LG01g04040	Cucurbita pepo (Zucchini)	cmacpeB724
CmaCh04G015910	Cp4.1LG01g13020	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G015910	CsaV3_5G031830	Cucumber (Chinese Long) v3	cmacucB0861
CmaCh04G015910	Bhi07G001371	Wax gourd	cmawgoB0896
CmaCh04G015910	Carg07975	Silver-seed gourd	carcmaB0530

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G015910	Bottle gourd (USVL1VR-Ls)	cmalsiB653
CmaCh04G015910	Bottle gourd (USVL1VR-Ls)	cmalsiB678
CmaCh04G015910	Bottle gourd (USVL1VR-Ls)	cmalsiB694
CmaCh04G015910	Cucumber (Gy14) v2	cgybcmaB130
CmaCh04G015910	Cucumber (Gy14) v2	cgybcmaB648
CmaCh04G015910	Melon (DHL92) v3.6.1	cmamedB740
CmaCh04G015910	Melon (DHL92) v3.6.1	cmamedB756
CmaCh04G015910	Silver-seed gourd	carcmaB1170
CmaCh04G015910	Cucumber (Chinese Long) v3	cmacucB0814
CmaCh04G015910	Cucumber (Chinese Long) v3	cmacucB0819
CmaCh04G015910	Watermelon (97103) v2	cmawmbB708
CmaCh04G015910	Watermelon (97103) v2	cmawmbB762
CmaCh04G015910	Watermelon (97103) v2	cmawmbB772
CmaCh04G015910	Cucurbita maxima (Rimu)	cmacmaB113
CmaCh04G015910	Cucurbita maxima (Rimu)	cmacmaB410
CmaCh04G015910	Cucurbita maxima (Rimu)	cmacmaB532
CmaCh04G015910	Cucumber (Gy14) v1	cgycmaB0592
CmaCh04G015910	Cucumber (Gy14) v1	cgycmaB0804
CmaCh04G015910	Cucurbita moschata (Rifu)	cmacmoB732
CmaCh04G015910	Wild cucumber (PI 183967)	cmacpiB693
CmaCh04G015910	Wild cucumber (PI 183967)	cmacpiB698
CmaCh04G015910	Cucumber (Chinese Long) v2	cmacuB685
CmaCh04G015910	Cucumber (Chinese Long) v2	cmacuB687
CmaCh04G015910	Melon (DHL92) v3.5.1	cmameB653
CmaCh04G015910	Melon (DHL92) v3.5.1	cmameB668
CmaCh04G015910	Melon (DHL92) v3.5.1	cmameB674
CmaCh04G015910	Watermelon (Charleston Gray)	cmawcgB658
CmaCh04G015910	Watermelon (Charleston Gray)	cmawcgB667
CmaCh04G015910	Watermelon (97103) v1	cmawmB702
CmaCh04G015910	Watermelon (97103) v1	cmawmB717
CmaCh04G015910	Watermelon (97103) v1	cmawmB747