Cp4.1LG01g04040 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g04040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 1486812 .. 1489672 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTATTTATTATTATTATTTTCTTTATTTTTGGGATATTTAAAATGGTGTAATGTCAGACTTGCCCTCAAGTGGACACAAAAAGGGTCTTCTTTATAATCATCACTATTTATTTATCTTCCTTGCTTTCATCATCGTCATCATCTACTTCTCTGGTTTAATTATTTTCTTCTTNTTTTTCAAAAATAAAATAGTTTCTGCCGAATTAAATTAATTTCTTCATTCATTTTGTAAAAGTGGATGGGCTGAATTTGAACCATCTGCCTATAAAAATGGATGTGGGTAATTTAGTGGGCTTTTTTGGGCCTGGGTCACTTTCCAGATCACATATTGGAGGCCCAAATTGGTTGGGCTTAGGCCCAACGGACATTATATTGGGCTTTTCAAAATTAGGGCTTAGGTTATGGGGCGGGTGCTCTACGGTTGGGCTATGGTCTTGGTTTCTCCCGCCAAGATCTCATGTTTTAACGGTCTTCTTCATCCAACATTTTGTCCTTTCCCTTCTCGCGTAACCTTCGTCAATTGTAACTTAACTTTGTCCGTCGGTTACAGAAGCAATCCCATCGTGGCCGAGTATGTATGCCTAGATCCGGTAGCGGAATTTGTAGTAATCGTAAGTTTTTCTTTCCAATATAGCGCTTTATCTGCTCAAATTGATTCCGGTTTTGCGTTGATTTATATGTTTGGTTGTTTTCGGCAGGAAACGCAGAGATTTAAGGAGCAGGTGTCGGAGAAGCTAGCGAAGGATCGTGAGACGATTGTGGAGGTTTGCTCGAAGTTTATTGTTTTATTGATTTTCGAAACTTTTAGGTTGAAAATGTTGTAATTCGTTCGTTGGGTGATTTGAATTTTGGATGCCTTTGTTTTGGGTTGAAGAATATGTCTGAGCAGCTACCTGTTTGAGAAAATGTGTGAATGAGGCGACTGTTTGATTGCAGAGTTATTTGAGTTTATTTGTGCTTTTGTGTTTTCATGGCTTGAGAATTATTTCCCATAGGTTCAATAATTAAGCCCTGAGAAAACATCGGACCTGCCAATATAGCTACAGAACTAGTACTGTTTCCAAGACAGCTTCCATTAATTGCGCAGAAATTTTCTGAATGTTTGACCAGTGTTGCCATTATTGATATGCTTCTTGTATTTTGATTTTTCAAATCAAAACTGAAATGAAGATTCCAATTTGAATTCAGTTGTCCGAATTTATGTGATAGTCTTAACATGAAAGTATGTACTTCCAAGTTGTAATCAGATATTTGGTGAATATTGCATGTGGAGTACGGAGGTTCTGGGACATTATTGGTGGAGCCTTTCACCCAAAATGGTTATTGCTCTCAATGAGAGGAAACTACCAGGAGCGCCTTTTGCCTCAAGAACTTCGATCCTTTTAGCTCAAAATCATCTAGTTCATGATTGGAATTCGAAAAGAGGGCTTAAATGATCTGTTTTTTCTAGTTACATTTGTGAAGATCCTTGTGTTTTGTATTGAGATTTCTGTTCTTTTTGTTGTTGCAGGCAGATGATGAAGGAAAAACGGTATGCTTCATCACAAAGATACTCCAATACAGTGTCAATTTCATTGATATCTTTGTTGCTATACAAATGACTTATTTCTCTCAATACATGAATCATTCTGGGGCTGTGGTTTTACACTGAATTGGAACTTTGGATGCCCATTTTCATGCTCTATATGAATCTTCTAACTTTCCACAATGAGCATCTTAAATCAAGCTCCACTATTCTGTCGTATGAACCACACTTGCTTGTCATGATTAAGAAAAAAGGGTTGAACATAAAATCAGCTGGCAGCTTCAGAAATGCTCTGCAATGATGGTCTCCAAGCCTTTGGCCTCGCTGCAGTGGCGTTTGCTGCTGGTGTTCTGATGCGATGTCTTTCATGTTTAACTACCTGCAATGTTTATTTCACAGAGATTATTGGTATGATTTTATCTTGAAAAAATCACTTCAAGTTGCCAAGGATCCCAATCACCATCATATTTGACATTTTTCATTTTCTTTTGCAGGCATCTGCTGTGATTCAAAAGGAAACAAATCTGGTTACCTGCTGGCTATTTTCAGTCTCATCTCCGGCAGCCGGCTTCTCCGGCTTCCTCTCCGACTCCGGCAATTGCTTCTTGGATTTTGCATACTTTTTAGCTCGCAACACCTTTATAACCTCTGCAAGTTCCAACAAAACGTCAAAAGGGCTGAACTAAAACAGAAGGAAATGAAAGAACTTCAAAAAGATCAAAGAGGCACCATACCCTGAGTAGTGACAAGCCGATAGGCATGGCCAAGAGCAAGAGTGTCATTTGGCCGGAGAAGCTTGACACGAGTAAACCGCACCGTTTTAGGCTCCCGATTATCTTCCTCAGATTGGGGCAAGGGAATTATAAGAGAAACATAGTGACCCGGATTAGTCCTCATGACTTCACTCGCCACCACCGGCCAATACAGCCTCTCAATCCGGCCAGTTGGATGCTGTATAACCAGAGCCGCCGCATCAACCGCCTGGCAATTCCCCATCTGAATGAATTCTGCAACTGATAGATAGATCGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAGAAGAAGAAGAAGGAAAGAAGTCTCTTTCTATACAGCTTCTGTGCTCGCCAAATGGGTCTACTTAGAAGTGCATGCCGTCCATTCATATATCTCACACTTTCCAACTAGCAATGCAACGTGGGTCAAATTTATATCGAAATTTGACAATGTAACCCACGGAGATTAGAGCATTAAAAAAAAAAATTACCTTTTTATACGTTCGATGATAAAAACTTAAACTTCGTGATTTTGGCTTTTATTATTTTTCAATTAAAACGACAAGTCGGCAACCC

mRNA sequence

TTTTATTTATTATTATTATTTTCTTTATTTTTGGGATATTTAAAATGGTGTAATGTCAGACTTGCCCTCAAGTGGACACAAAAAGGGTCTTCTTTATAATCATCACTATTTATTTATCTTCCTTGCTTTCATCATCGTCATCATCTACTTCTCTGGTTTAATTATTTTCTTCTTNTTTTTCAAAAATAAAATAGTTTCTGCCGAATTAAATTAATTTCTTCATTCATTTTGTAAAAGTGGATGGGCTGAATTTGAACCATCTGCCTATAAAAATGGATGTGGGTAATTTAGTGGGCTTTTTTGGGCCTGGGTCACTTTCCAGATCACATATTGGAGGCCCAAATTGGTTGGGCTTAGGCCCAACGGACATTATATTGGGCTTTTCAAAATTAGGGCTTAGGTTATGGGGCGGGTGCTCTACGGTTGGGCTATGGTCTTGGTTTCTCCCGCCAAGATCTCATGTTTTAACGGTCTTCTTCATCCAACATTTTGTCCTTTCCCTTCTCGCGTAACCTTCGTCAATTGTAACTTAACTTTGTCCGTCGGTTACAGAAGCAATCCCATCGTGGCCGAGTATGTATGCCTAGATCCGGTAGCGGAATTTGTAGTAATCGAAACGCAGAGATTTAAGGAGCAGGTGTCGGAGAAGCTAGCGAAGGATCGTGAGACGATTGTGGAGGCAGATGATGAAGGAAAAACGGTATGCTTCATCACAAAGATACTCCAATACAGTGTCAATTTCATTGATATCTTTGTTGCTATACAAATGACTTATTTCTCTCAATACATGAATCATTCTGGGGCTGTGGTTTTACACTGAATTGGAACTTTGGATGCCCATTTTCATGCTCTATATGAATCTTCTAACTTTCCACAATGAGCATCTTAAATCAAGCTCCACTATTCTGTCGTATGAACCACACTTGCTTGTCATGATTAAGAAAAAAGGGTTGAACATAAAATCAGCTGGCAGCTTCAGAAATGCTCTGCAATGATGGTCTCCAAGCCTTTGGCCTCGCTGCAGTGGCGTTTGCTGCTGGTGTTCTGATGCGATGTCTTTCATGTTTAACTACCTGCAATGTTTATTTCACAGAGATTATTGGCATCTGCTGTGATTCAAAAGGAAACAAATCTGGTTACCTGCTGGCTATTTTCAGTCTCATCTCCGGCAGCCGGCTTCTCCGGCTTCCTCTCCGACTCCGGCAATTGCTTCTTGGATTTTGCATACTTTTTAGCTCGCAACACCTTTATAACCTCTGCAAGTTCCAACAAAACGTCAAAAGGGCTGAACTAAAACAGAAGGAAATGAAAGAACTTCAAAAAGATCAAAGAGGCACCATACCCTGAGTAGTGACAAGCCGATAGGCATGGCCAAGAGCAAGAGTGTCATTTGGCCGGAGAAGCTTGACACGAGTAAACCGCACCGTTTTAGGCTCCCGATTATCTTCCTCAGATTGGGGCAAGGGAATTATAAGAGAAACATAGTGACCCGGATTAGTCCTCATGACTTCACTCGCCACCACCGGCCAATACAGCCTCTCAATCCGGCCAGTTGGATGCTGTATAACCAGAGCCGCCGCATCAACCGCCTGGCAATTCCCCATCTGAATGAATTCTGCAACTGATAGATAGATCGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAGAAGAAGAAGAAGGAAAGAAGTCTCTTTCTATACAGCTTCTGTGCTCGCCAAATGGGTCTACTTAGAAGTGCATGCCGTCCATTCATATATCTCACACTTTCCAACTAGCAATGCAACGTGGGTCAAATTTATATCGAAATTTGACAATGTAACCCACGGAGATTAGAGCATTAAAAAAAAAAATTACCTTTTTATACGTTCGATGATAAAAACTTAAACTTCGTGATTTTGGCTTTTATTATTTTTCAATTAAAACGACAAGTCGGCAACCC

Coding sequence (CDS)

ATGGGGCGGGTGCTCTACGGTTGGGCTATGGTCTTGGTTTCTCCCGCCAAGATCTCATGTTTTAACGGTCTTCTTCATCCAACATTTTGTCCTTTCCCTTCTCGCGTAACCTTCGTCAATTGTAACTTAACTTTGTCCGTCGGTTACAGAAGCAATCCCATCGTGGCCGAGTATGTATGCCTAGATCCGGTAGCGGAATTTGTAGTAATCGAAACGCAGAGATTTAAGGAGCAGGTGTCGGAGAAGCTAGCGAAGGATCGTGAGACGATTGTGGAGGCAGATGATGAAGGAAAAACGGTATGCTTCATCACAAAGATACTCCAATACAGTGTCAATTTCATTGATATCTTTGTTGCTATACAAATGACTTATTTCTCTCAATACATGAATCATTCTGGGGCTGTGGTTTTACACTGA

Protein sequence

MGRVLYGWAMVLVSPAKISCFNGLLHPTFCPFPSRVTFVNCNLTLSVGYRSNPIVAEYVCLDPVAEFVVIETQRFKEQVSEKLAKDRETIVEADDEGKTVCFITKILQYSVNFIDIFVAIQMTYFSQYMNHSGAVVLH
Homology
[Close]
BLAST of Cp4.1LG01g04040 vs. NCBI nr
Match: gi|659090866|ref|XP_008446244.1| (PREDICTED: uncharacterized protein LOC103489034 isoform X2 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 6.9e-18
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 6   YGWAMVL---VSPAKISCFNGLLHPTFCPFPSRVT-FVNCNLTLSVGYRSNPIVAEYVCL 65
           YG A+V    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPVAEFVVIETQRFKEQVSEKLAKDRETIVEADDEGKTVC 102
           +P+ EF  +ETQ+FKEQ+S+KLAKDRET     D    VC
Sbjct: 64  EPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVC 103

[Close]
BLAST of Cp4.1LG01g04040 vs. NCBI nr
Match: gi|659090868|ref|XP_008446245.1| (PREDICTED: uncharacterized protein LOC103489034 isoform X3 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 6.9e-18
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 6   YGWAMVL---VSPAKISCFNGLLHPTFCPFPSRVT-FVNCNLTLSVGYRSNPIVAEYVCL 65
           YG A+V    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPVAEFVVIETQRFKEQVSEKLAKDRETIVEADDEGKTVC 102
           +P+ EF  +ETQ+FKEQ+S+KLAKDRET     D    VC
Sbjct: 64  EPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVC 103

[Close]
BLAST of Cp4.1LG01g04040 vs. NCBI nr
Match: gi|659090870|ref|XP_008446246.1| (PREDICTED: uncharacterized protein LOC103489034 isoform X4 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 6.9e-18
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 6   YGWAMVL---VSPAKISCFNGLLHPTFCPFPSRVT-FVNCNLTLSVGYRSNPIVAEYVCL 65
           YG A+V    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPVAEFVVIETQRFKEQVSEKLAKDRETIVEADDEGKTVC 102
           +P+ EF  +ETQ+FKEQ+S+KLAKDRET     D    VC
Sbjct: 64  EPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVC 103

[Close]
BLAST of Cp4.1LG01g04040 vs. NCBI nr
Match: gi|659090864|ref|XP_008446243.1| (PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 6.9e-18
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 6   YGWAMVL---VSPAKISCFNGLLHPTFCPFPSRVT-FVNCNLTLSVGYRSNPIVAEYVCL 65
           YG A+V    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPVAEFVVIETQRFKEQVSEKLAKDRETIVEADDEGKTVC 102
           +P+ EF  +ETQ+FKEQ+S+KLAKDRET     D    VC
Sbjct: 64  EPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVC 103

[Close]
BLAST of Cp4.1LG01g04040 vs. NCBI nr
Match: gi|778705146|ref|XP_011655644.1| (PREDICTED: uncharacterized protein LOC101211725 isoform X2 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 6   YGWAMVL---VSPAKISCFNGLLHPTFCPFPSRVT-FVNCNLTLSVGYRSNPIVAEYVCL 65
           YG A+V    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGGALVSAVEVSPAKIAGFNGLHYPTFFLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPVAEFVVIETQRFKEQVSEKLAKDRETIVEADDEGKTVC 102
           +P+ EF  +ETQ+FKEQ+S+KLAKDRET     D    VC
Sbjct: 64  EPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVC 103

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g04040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g04040 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g04040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g04040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090866|ref|XP_008446244.1|6.9e-1857.00PREDICTED: uncharacterized protein LOC103489034 isoform X2 [Cucumis melo][more]
gi|659090868|ref|XP_008446245.1|6.9e-1857.00PREDICTED: uncharacterized protein LOC103489034 isoform X3 [Cucumis melo][more]
gi|659090870|ref|XP_008446246.1|6.9e-1857.00PREDICTED: uncharacterized protein LOC103489034 isoform X4 [Cucumis melo][more]
gi|659090864|ref|XP_008446243.1|6.9e-1857.00PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo][more]
gi|778705146|ref|XP_011655644.1|1.5e-1757.00PREDICTED: uncharacterized protein LOC101211725 isoform X2 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010468 regulation of gene expression
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g04040.1Cp4.1LG01g04040.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 136..138
score: -coord: 76..96
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g04040Cucsa.285790Cucumber (Gy14) v1cgycpeB0755
Cp4.1LG01g04040CmaCh04G015910Cucurbita maxima (Rimu)cmacpeB724
Cp4.1LG01g04040CmoCh04G016640Cucurbita moschata (Rifu)cmocpeB676
Cp4.1LG01g04040MELO3C012022Melon (DHL92) v3.5.1cpemeB380
Cp4.1LG01g04040Lsi04G005160Bottle gourd (USVL1VR-Ls)cpelsiB363
Cp4.1LG01g04040MELO3C012022.2Melon (DHL92) v3.6.1cpemedB439
Cp4.1LG01g04040CsaV3_5G031830Cucumber (Chinese Long) v3cpecucB0521
Cp4.1LG01g04040Bhi07G001371Wax gourdcpewgoB0561
Cp4.1LG01g04040Carg07975Silver-seed gourdcarcpeB0527
Cp4.1LG01g04040Carg01763Silver-seed gourdcarcpeB1178
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g04040Cp4.1LG01g13020Cucurbita pepo (Zucchini)cpecpeB375
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g04040Cucumber (Chinese Long) v3cpecucB0550
Cp4.1LG01g04040Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g04040Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g04040Wild cucumber (PI 183967)cpecpiB419
Cp4.1LG01g04040Wild cucumber (PI 183967)cpecpiB445
Cp4.1LG01g04040Cucumber (Chinese Long) v2cpecuB419
Cp4.1LG01g04040Cucumber (Chinese Long) v2cpecuB444
Cp4.1LG01g04040Watermelon (Charleston Gray)cpewcgB395
Cp4.1LG01g04040Watermelon (97103) v1cpewmB379
Cp4.1LG01g04040Watermelon (97103) v1cpewmB434
Cp4.1LG01g04040Cucumber (Gy14) v2cgybcpeB631