CmoCh04G003100 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G003100
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 1541830 .. 1544265 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCGGGTGCTCTACGGTTGTGCTCTTGTCTTGGTTTCTCCCGCCAAGATCTCATGTTTTAACGGTCTTCTTCATCCAACATTTTGTCCTTTCCCTTCTCGTGTAACCTTCGTCAATTGTAACTTAACTTTGTCCGTCGGTTACAGAAGCAATCCGATCGTGGCCGAGTATGTATGCCTAGATCCGATAGCGGAATTTGTAGTAGTCGTAAGTTTTTCTTTCCAATATAGCGCTTTATCTGCTCAAATTGATTCCGGTTTTGCGTTGATTTATATGTTTGGTTGTTTTTGGGAGGAAACCCAGAGATTTAAGGAGTAGGTGTCGGAGAAGCTAGCGAAGGATCGTGAGACGATTGTGGAGGTTTGCTCGAAGTTTATTGTTTTTTATTGATTTTCGAAACTTTTAGGTTGAAAATGTTGTGATTCGTTCGTTGGGTGATTTGAATTTTGGATGCCCTTGTTTTGGGTTGAAGAATATGTCTGAGCAGCTACCTGTTTGAGAAAATTTGTGAATGAGGCGACTGTTTGATTGCAGAGTTATTTGAGTTTTTTTGTGCTTTTGAGTTATCATGGCTTGAGAATTATTTCCCATAGGTTCAATAATTAAGCCCTGAGAAAACATCGGACCTGCCAATATAGCTACAGAACTAGTACTGTTTCCAAGACAGCTTCCATTAATTGCGCAGAAATTTTCTGAATGTTTGACCAGTGCTGCCATTATTGATATGCTTCTTGTATTTTGATTTTTCAAATCAAAACTGAAATGAAGATTCCAATTTGAATTCAGTTGTCCGAATTTATGTGATAGTCTTAACATGAAAGTATGTACTTCCAAGTTGTAATATCAGATATTTGGTGAATATTGCATGTGGAGTACGGAGGTTCTGGGACATTATTGGTGGAGCCTTTCACCCAAAATGGTTATTGCTCTCAATGAGGGGAAACTACCAGGAGCGCCATTTGCCTCAAGAACTTCGATCCTTTCAGCTCAAAATCATCTAGTTCATGATTGGAATTCGAAAAGAGGGCTTAAATGATCTGTTTTTTCTAGTTACATTTGTGAAGATCCTTGTATTTTGTATTGAGATTTTCTGTTCTTTTTGTTGTTGCAGGCAGATGATGAAGGAAAAGCTGTATGCTTCATCACAAAGATTCTCCAATACAGTGTCAATTCCATTGATATCTTTGTTGCTATACACATGACTTATTTCTCTCAATACATGAATCATTCTGGGGCTGTGGTTTTACACTGAATTGGAAATTTGGATGCTCATTTTCATGCTCTATATGAATCTTCTAACTTCCACAATGAGCATCTTAAATCAAGCTCCACTATTCTGTCGTATCAACCACACTTGCTTGTCATGATCAAGAACAAAGGGTTGAACATAAAATCAGCTGGCAGCTTCAGAAATGCTCTGCAATGATGGTCTCCAAGCCTTTGGCCTCGCTGCAGTGGCGTTTGCTGCTGGTGTTCTGATGCGATGTCTTTCATGTTTGACTACCTGCAATGTTTATTTCACAGAGATTATTGGTATGATTTTATCTTCAAAAAATCACTTCAAGTTGCCAAGGATCCCAATCACCATCATATTTGACTTTTTTCATTTTCTTTTGCAGTCATCTGCTGTGATTCAAAAGGAAACAAATCTGGTTACCTGCTGGCTATTTTCAGTCTCATCTCCGGCAGCCGGCTTCTCCGGCTTCCTCTCCGACTCCGGCAATTGCTTCTTGGATTTTGCATACTTTTTAGCTCGCAACACCTTTATAACCTCTGCAAATTCCAACAAAACGTCAAAAGGGCTGAACTAAAACAGAAGGAAATGAAAGAACTTCAAAAAGATCAAAGAGGCACCATACCCTGAGTAGTGACAAGCCGATAGGCATGGCCAAGAGCAAGAGTGTCATTTGGCCGGAGAAGCTTGACACGGGTAAACCGCACCGTTTTAGGCTCCCGATTATCTTCCTCAGATTGAGGCAAGGGAATTATAAGAGAAACATAGTGACCCGGATTAGTCCTCATGACTTCACTCGCCACCACCGGCCAATACAGCCTCTCAATCCGGCCAGTTGGATGCTGTATAACCAGAGCCGCCGCATCAACCGCCTGGCAATTCCCCATCTGAATGAATTCTGCAACTGATAGATAGATCGAAAGAAGAAGAAGAAGAAGAAGATGAAGATGAAGGAAATAAGTCTCTTTCTATACAGCTTCTGTGCTCGCCAAATGGGTCTACTTAGAAGTGCATGCCGTCCATTCATATATCTCACACTTTCCAACTAACTCAATGCAACGTGGGTCAAATTTATATCGAAAATTGACAATGTAACCCACGGAGATTAGAGCATTAAAAAAAAAATTACCTTTTTATACGTTCGATGATAAAAACTTAAAACTTTGTGATTTTGGCTTTTATTATTTTTCAATTAAAAC

mRNA sequence

ATGGGGCGGGTGCTCTACGGTTGTGCTCTTGTCTTGGTTTCTCCCGCCAAGATCTCATGTTTTAACGGTCTTCTTCATCCAACATTTTGTCCTTTCCCTTCTCGTGTAACCTTCGTCAATTGTAACTTAACTTTGTCCGTCGGTTACAGAAGCAATCCGATCGTGGCCGAGTATGTATGCCTAGATCCGATAGCGGAATTTGTAGTAGTCGTGTCGGAGAAGCTAGCGAAGGATCGTGAGACGATTGTGGAGGTTGAAAATGTTGTGATTCGTTCGTTGGGTGATTTGAATTTTGGATGCCCTTGTTTTGGGTTGAAGAATATGTCTGAGCAGCTACCTATATTTGGTGAATATTGCATGTGGAGTACGGAGGTTCTGGGACATTATTGGTGGAGCCTTTCACCCAAAATGGTTATTGCTCTCAATGAGGGGAAACTACCAGGAGCGCCATTTGCCTCAAGAACTTCGATCCTTTCAGCTCAAAATCATCTAGCAGATGATGAAGGAAAAGCTGTATGCTTCATCACAAAGATTCTCCAATACAGTGTCAATTCCATTGATATCTTTGTTGCTATACACATGACTTATTTCTCTCAATACATGAATCATTCTGGGGCTGTGCTGGCAGCTTCAGAAATGCTCTGCAATGATGGTCTCCAAGCCTTTGGCCTCGCTGCAGTGGCGTTTGCTGCTGTCATCTGCTGTGATTCAAAAGGAAACAAATCTGGTTACCTGCTGGCTATTTTCAGTCTCATCTCCGGCAGCCGGCTTCTCCGGCTTCCTCTCCGACTCCGGCAATTGCTTCTTGGATTTTGCATACTTTTTAGCTCGCAACACCTTTATAACCTCTGCAAATTCCAACAAAACGTCAAAAGGGCTGAACTAAAACAGAAGGAAATGAAAGAACTTCAAAAAGATCAAAGAGGCACCATACCCTGAGTAGTGACAAGCCGATAGGCATGGCCAAGAGCAAGAGTGTCATTTGGCCGGAGAAGCTTGACACGGGTAAACCGCACCGTTTTAGGCTCCCGATTATCTTCCTCAGATTGAGGCAAGGGAATTATAAGAGAAACATAGTGACCCGGATTAGTCCTCATGACTTCACTCGCCACCACCGGCCAATACAGCCTCTCAATCCGGCCAGTTGGATGCTGTATAACCAGAGCCGCCGCATCAACCGCCTGGCAATTCCCCATCTGAATGAATTCTGCAACTGATAGATAGATCGAAAGAAGAAGAAGAAGAAGAAGATGAAGATGAAGGAAATAAGTCTCTTTCTATACAGCTTCTGTGCTCGCCAAATGGGTCTACTTAGAAGTGCATGCCGTCCATTCATATATCTCACACTTTCCAACTAACTCAATGCAACGTGGGTCAAATTTATATCGAAAATTGACAATGTAACCCACGGAGATTAGAGCATTAAAAAAAAAATTACCTTTTTATACGTTCGATGATAAAAACTTAAAACTTTGTGATTTTGGCTTTTATTATTTTTCAATTAAAAC

Coding sequence (CDS)

ATGGGGCGGGTGCTCTACGGTTGTGCTCTTGTCTTGGTTTCTCCCGCCAAGATCTCATGTTTTAACGGTCTTCTTCATCCAACATTTTGTCCTTTCCCTTCTCGTGTAACCTTCGTCAATTGTAACTTAACTTTGTCCGTCGGTTACAGAAGCAATCCGATCGTGGCCGAGTATGTATGCCTAGATCCGATAGCGGAATTTGTAGTAGTCGTGTCGGAGAAGCTAGCGAAGGATCGTGAGACGATTGTGGAGGTTGAAAATGTTGTGATTCGTTCGTTGGGTGATTTGAATTTTGGATGCCCTTGTTTTGGGTTGAAGAATATGTCTGAGCAGCTACCTATATTTGGTGAATATTGCATGTGGAGTACGGAGGTTCTGGGACATTATTGGTGGAGCCTTTCACCCAAAATGGTTATTGCTCTCAATGAGGGGAAACTACCAGGAGCGCCATTTGCCTCAAGAACTTCGATCCTTTCAGCTCAAAATCATCTAGCAGATGATGAAGGAAAAGCTGTATGCTTCATCACAAAGATTCTCCAATACAGTGTCAATTCCATTGATATCTTTGTTGCTATACACATGACTTATTTCTCTCAATACATGAATCATTCTGGGGCTGTGCTGGCAGCTTCAGAAATGCTCTGCAATGATGGTCTCCAAGCCTTTGGCCTCGCTGCAGTGGCGTTTGCTGCTGTCATCTGCTGTGATTCAAAAGGAAACAAATCTGGTTACCTGCTGGCTATTTTCAGTCTCATCTCCGGCAGCCGGCTTCTCCGGCTTCCTCTCCGACTCCGGCAATTGCTTCTTGGATTTTGCATACTTTTTAGCTCGCAACACCTTTATAACCTCTGCAAATTCCAACAAAACGTCAAAAGGGCTGAACTAAAACAGAAGGAAATGAAAGAACTTCAAAAAGATCAAAGAGGCACCATACCCTGA

Homology

[Close]

BLAST of CmoCh04G003100 vs. TrEMBL
Match: A0A0A0KQC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603300 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.1e-07
Identity = 50/126 (39.68%), Postives = 61/126 (48.41%), Query Frame = 1


Query: 50  RSNPIVAEYVCLDPIAEFVVV--------VSEKLAKDRETIVEVENVVIRSLGDLNFGCP 109
           R+ PI A YV  +PI EF  V        +S+KLAKDRET                FG  
Sbjct: 43  RATPITASYVYPEPIPEFAEVETQKFKEQLSKKLAKDRET----------------FGND 102

Query: 110 CFGLKNMSEQLPIFGEYCMWSTEVLGHYWWSLSPKMVIALNEGKLPGAPFASRTSILSAQ 168
              + ++  +  IFGEY        G         M IALNE KL GAP A+RTS+L AQ
Sbjct: 103 FDSVVDVCSK--IFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLSGAPLAARTSLLWAQ 150

[Close]

BLAST of CmoCh04G003100 vs. NCBI nr
Match: gi|659090864|ref|XP_008446243.1| (PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 81/174 (46.55%), Postives = 95/174 (54.60%), Query Frame = 1


Query: 6   YGCALVL---VSPAKISCFNGLLHPTFCPFPSRVT-FVNCNLTLSVGYRSNPIVAEYVCL 65
           YGCALV    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPIAEFVVV--------VSEKLAKDRETIVEVENVVIRSLGDLNFGCPCFGLKNMSEQLP 125
           +PI EF  V        +S+KLAKDRET                FG     + ++  +  
Sbjct: 64  EPIPEFAEVETQKFKEQLSKKLAKDRET----------------FGNDFDSVVDVCSK-- 123

Query: 126 IFGEYCMWSTEVLGHYWWSLSPKMVIALNEGKLPGAPFASRTSILSAQNHLADD 168
           IFGEY        G         M IALNE KLPGAP A+RTS+L AQN+L +D
Sbjct: 124 IFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDND 159

[Close]

BLAST of CmoCh04G003100 vs. NCBI nr
Match: gi|449434893|ref|XP_004135230.1| (PREDICTED: uncharacterized protein LOC101211725 isoform X1 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 80/174 (45.98%), Postives = 93/174 (53.45%), Query Frame = 1


Query: 6   YGCALVL---VSPAKISCFNGLLHPTFCPFPSRVT-FVNCNLTLSVGYRSNPIVAEYVCL 65
           YG ALV    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGGALVSAVEVSPAKIAGFNGLHYPTFFLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPIAEFVVV--------VSEKLAKDRETIVEVENVVIRSLGDLNFGCPCFGLKNMSEQLP 125
           +PI EF  V        +S+KLAKDRET                FG     + ++  +  
Sbjct: 64  EPIPEFAEVETQKFKEQLSKKLAKDRET----------------FGNDFDSVVDVCSK-- 123

Query: 126 IFGEYCMWSTEVLGHYWWSLSPKMVIALNEGKLPGAPFASRTSILSAQNHLADD 168
           IFGEY        G         M IALNE KL GAP A+RTS+L AQNHL +D
Sbjct: 124 IFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLSGAPLAARTSLLWAQNHLDND 159

[Close]

BLAST of CmoCh04G003100 vs. NCBI nr
Match: gi|659090866|ref|XP_008446244.1| (PREDICTED: uncharacterized protein LOC103489034 isoform X2 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-13
Identity = 59/123 (47.97%), Postives = 69/123 (56.10%), Query Frame = 1


Query: 6   YGCALVL---VSPAKISCFNGLLHPTFCPFPSRVT-FVNCNLTLSVGYRSNPIVAEYVCL 65
           YGCALV    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPIAEFVVV--------VSEKLAKDRETIVEVENVVIRSLGDLNFGCPCFGLKNMSEQLP 117
           +PI EF  V        +S+KLAKDRET     + V+               KNMS +LP
Sbjct: 64  EPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCS-----------KNMSGRLP 115

[Close]

BLAST of CmoCh04G003100 vs. NCBI nr
Match: gi|659090868|ref|XP_008446245.1| (PREDICTED: uncharacterized protein LOC103489034 isoform X3 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 3.4e-12
Identity = 54/104 (51.92%), Postives = 62/104 (59.62%), Query Frame = 1


Query: 6   YGCALVL---VSPAKISCFNGLLHPTFCPFPSRVT-FVNCNLTLSVGYRSNPIVAEYVCL 65
           YGCALV    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4   YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66  DPIAEFVVV--------VSEKLAKDRETIVEVENVVIRSLGDLN 98
           +PI EF  V        +S+KLAKDRET     + V+     LN
Sbjct: 64  EPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKLN 107

[Close]

BLAST of CmoCh04G003100 vs. NCBI nr
Match: gi|659090870|ref|XP_008446246.1| (PREDICTED: uncharacterized protein LOC103489034 isoform X4 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 3.4e-12
Identity = 51/88 (57.95%), Postives = 57/88 (64.77%), Query Frame = 1


Query: 6  YGCALVL---VSPAKISCFNGLLHPTFCPFPSRVT-FVNCNLTLSVGYRSNPIVAEYVCL 65
          YGCALV    VSPAKI+ FNGL +PTF  FPS V   VNC LT SV YR+ PI A YV  
Sbjct: 4  YGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYP 63

Query: 66 DPIAEFVVV--------VSEKLAKDRET 82
          +PI EF  V        +S+KLAKDRET
Sbjct: 64 EPIPEFAEVETQKFKEQLSKKLAKDRET 91

The following BLAST results are available for this feature:

BLAST of CmoCh04G003100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G003100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQC6_CUCSA	5.1e-07	39.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603300 PE=4 SV=1	[more]

BLAST of CmoCh04G003100 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G003100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090864\|ref\|XP_008446243.1\|	2.3e-21	46.55	PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo]	[more]
gi\|449434893\|ref\|XP_004135230.1\|	2.2e-19	45.98	PREDICTED: uncharacterized protein LOC101211725 isoform X1 [Cucumis sativus]	[more]
gi\|659090866\|ref\|XP_008446244.1\|	3.1e-13	47.97	PREDICTED: uncharacterized protein LOC103489034 isoform X2 [Cucumis melo]	[more]
gi\|659090868\|ref\|XP_008446245.1\|	3.4e-12	51.92	PREDICTED: uncharacterized protein LOC103489034 isoform X3 [Cucumis melo]	[more]
gi\|659090870\|ref\|XP_008446246.1\|	3.4e-12	57.95	PREDICTED: uncharacterized protein LOC103489034 isoform X4 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G003100.1	CmoCh04G003100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G003100	CSPI05G22950	Wild cucumber (PI 183967)	cmocpiB726
CmoCh04G003100	Cp4.1LG01g13020	Cucurbita pepo (Zucchini)	cmocpeB678
CmoCh04G003100	MELO3C012022.2	Melon (DHL92) v3.6.1	cmomedB737
CmoCh04G003100	CsaV3_5G031830	Cucumber (Chinese Long) v3	cmocucB0851
CmoCh04G003100	Cla97C05G107180	Watermelon (97103) v2	cmowmbB736
CmoCh04G003100	Bhi07G001371	Wax gourd	cmowgoB0907
CmoCh04G003100	Carg07975	Silver-seed gourd	carcmoB0514

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G003100	Wax gourd	cmowgoB0895
CmoCh04G003100	Cucurbita moschata (Rifu)	cmocmoB465
CmoCh04G003100	Cucumber (Gy14) v1	cgycmoB0798
CmoCh04G003100	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G003100	Cucurbita maxima (Rimu)	cmacmoB732
CmoCh04G003100	Cucumber (Chinese Long) v2	cmocuB718
CmoCh04G003100	Melon (DHL92) v3.5.1	cmomeB647
CmoCh04G003100	Watermelon (Charleston Gray)	cmowcgB661
CmoCh04G003100	Watermelon (97103) v1	cmowmB700
CmoCh04G003100	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G003100	Bottle gourd (USVL1VR-Ls)	cmolsiB674
CmoCh04G003100	Cucumber (Gy14) v2	cgybcmoB630
CmoCh04G003100	Silver-seed gourd	carcmoB1140