ClCG05G025070 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G025070
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Pentatricopeptide repeat-containing protein
Location	CG_Chr05 : 36533620 .. 36534756 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCTACGGTTGTGCTCTGGTCTCTCCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCACCATTTTCCTCTTTCCCTCCTTTCGTAAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCCGATCCCCGCCAGCTATGTTTACCCTGAACCGATACCGGAATTTGCAGAAGTTGTAAGTTTTCCCGACGTAGCTTCTTTGTCTGCTCAATTCATTCTGGTTTTGCGTTATGTGGTCGCGTTGATTAATACATTTCGCTTTTTGCAGGAAACCCAGAAATTTAAGGAGCAGTTATCGAACAAACTAGCGAAGCATCACGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGGTAATCATTTTATTGATTTGCAACACGATTAGATTGAAAAGACTGTAATTTCGTTATTGGGTAATTATTAGAATTTTGAATTCCTTTGTATTGGGTTGAAGAATATGTCTGAGTGGCCTACCCGTTTGAGAAAAATGTGTAAATCGAACGAGGCCATTGTTTCCTTAAAGAGTTAGTTTTATTTTAGTTGTGCTTTTTCCTTCAAGTGTTTCCATGGCGTGAGATTTATTTCCCAACATTTCAATAATTGAGACCTGAGGAAACATCGGACCTGCCTATTGAGCTACAGGACGATCACTATTTCCAAGACAGCTTCCATTAATTGCGCAGAATTTTTCTGAATGTTTGACTAGTGCTGCCATTATTGATATGCTTCTTGCATTTTTGATTTTTCAAATCAAACTTGAATGAATATTCCAATTTGAATTCAGTTGTCCGGATTTAAGTGAGCTTAACATGAACGTACTTGCAAGTTTTGAGCAGATATTTGGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTCAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCGCTAGAACTTCTCTCCTATGGGCTCAAAACCATCTAGATCACGATTGGAAAGTTTGGAACTCAAAAGGAGGGCTCAATTGATTTGCTTCTAGTTGTTATATTTGTGAAGATCCTTGTATTTGTATCTAG

mRNA sequence

ATGGCGCTCTACGGTTGTGCTCTGGTCTCTCCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCACCATTTTCCTCTTTCCCTCCTTTCGTAAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCCGATCCCCGCCAGCTATGTTTACCCTGAACCGATACCGGAATTTGCAGAAGTTGTAAGTTTTCCCGACGTAGCTTCTTTGTCTGCTCAATTCATTCTGGTTTTGCGTTATGTGGTCGCGTTGATTAATACATTTCGCTTTTTGCAGGAAACCCAGAAATTTAAGGAGCAGTTATCGAACAAACTAGCGAAGCATCACGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGATATTTGGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTCAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCGCTAGAACTTCTCTCCTATGGGCTCAAAACCATCTAGATCACGATTGGAAAGTTTGGAACTCAAAAGGAGGGCTCAATTGATTTGCTTCTAGTTGTTATATTTGTGAAGATCCTTGTATTTGTATCTAG

Coding sequence (CDS)

ATGGCGCTCTACGGTTGTGCTCTGGTCTCTCCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCACCATTTTCCTCTTTCCCTCCTTTCGTAAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCCGATCCCCGCCAGCTATGTTTACCCTGAACCGATACCGGAATTTGCAGAAGTTGTAAGTTTTCCCGACGTAGCTTCTTTGTCTGCTCAATTCATTCTGGTTTTGCGTTATGTGGTCGCGTTGATTAATACATTTCGCTTTTTGCAGGAAACCCAGAAATTTAAGGAGCAGTTATCGAACAAACTAGCGAAGCATCACGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGATATTTGGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTCAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCGCTAGAACTTCTCTCCTATGGGCTCAAAACCATCTAGATCACGATTGGAAAGTTTGGAACTCAAAAGGAGGGCTCAATTGA

Protein sequence

MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVVSFPDVASLSAQFILVLRYVVALINTFRFLQETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLN

Homology

[Close]

BLAST of ClCG05G025070 vs. TrEMBL
Match: A0A0A0KQC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603300 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.2e-51
Identity = 107/148 (72.30%), Postives = 110/148 (74.32%), Query Frame = 1


Query: 52  RATPIPASYVYPEPIPEFAEVVSFPDVASLSAQFILVLRYVVALINTFRFLQETQKFKEQ 111
           RATPI ASYVYPEPIPEFAEV                               ETQKFKEQ
Sbjct: 43  RATPITASYVYPEPIPEFAEV-------------------------------ETQKFKEQ 102

Query: 112 LSNKLAKHHETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPG 171
           LS KLAK  ETFGND DSVVDVCSKIFGEYLHVEYGGPGTL+VEPFTNMFIALNERKL G
Sbjct: 103 LSKKLAKDRETFGNDFDSVVDVCSKIFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLSG 159

Query: 172 APLAARTSLLWAQNHLDHDWKVWNSKGG 200
           APLAARTSLLWAQNHLD+DW +WNSKGG
Sbjct: 163 APLAARTSLLWAQNHLDNDWNIWNSKGG 159

[Close]

BLAST of ClCG05G025070 vs. TrEMBL
Match: A0A0D2UY70_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G344500 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-38
Identity = 88/170 (51.76%), Postives = 106/170 (62.35%), Query Frame = 1


Query: 27  YPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVVSFPDVASLSAQFI 86
           +   SS P  VKPF+++   S            YVY +PIP+FAE               
Sbjct: 44  FSTLSSKPISVKPFLSALRASH--------SQKYVYHDPIPKFAEA-------------- 103

Query: 87  LVLRYVVALINTFRFLQETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKIFGEYLHVEY 146
                            ETQKFK +L NKL+K  + FG+DLDSV+DVC KIF ++LH EY
Sbjct: 104 -----------------ETQKFKAELFNKLSKDKDKFGDDLDSVIDVCVKIFNDFLHNEY 163

Query: 147 GGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNS 197
           GGPGTLLVEPFT+MF+AL E+KLPGAP+AAR SLLWAQNHLDHDW+VWNS
Sbjct: 164 GGPGTLLVEPFTDMFVALKEKKLPGAPVAARASLLWAQNHLDHDWEVWNS 174

[Close]

BLAST of ClCG05G025070 vs. TrEMBL
Match: A0A0B0N3U8_GOSAR (Dna-directed rna polymerase subunit a OS=Gossypium arboreum GN=F383_31884 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.1e-38
Identity = 100/213 (46.95%), Postives = 123/213 (57.75%), Query Frame = 1


Query: 1   MALYGCALVS-PIAVSPAKITSFN----------------GFHYPPFSSFPPFVKPFVNS 60
           MA   C+LVS P +++PAKI +                     +P  SS P  VKPF+ S
Sbjct: 1   MASSSCSLVSIPPSLTPAKIPTSTILILRNAGLILNPPPPPLSFPTLSSKPISVKPFL-S 60

Query: 61  TLTSSFIYRATPIPASYVYPEPIPEFAEVVSFPDVASLSAQFILVLRYVVALINTFRFLQ 120
            L SS   +       YVY +PIP+FAE                                
Sbjct: 61  VLRSSHSQK-------YVYHDPIPKFAEA------------------------------- 120

Query: 121 ETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIA 180
           ETQKFK +L NKL+K  + FG+DLDSV+ VC +IF ++LH EYGG GTLLVEPFT+MF+A
Sbjct: 121 ETQKFKAELFNKLSKDKDKFGDDLDSVIVVCVEIFNDFLHNEYGGSGTLLVEPFTDMFVA 174

Query: 181 LNERKLPGAPLAARTSLLWAQNHLDHDWKVWNS 197
           L E+KLPGAP+AAR SLLWAQNHLDHDW+VWNS
Sbjct: 181 LKEKKLPGAPVAARASLLWAQNHLDHDWEVWNS 174

[Close]

BLAST of ClCG05G025070 vs. TrEMBL
Match: A0A061E7M7_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_010229 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.0e-37
Identity = 87/187 (46.52%), Postives = 116/187 (62.03%), Query Frame = 1


Query: 14  VSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPAS----YVYPEPIPEF 73
           ++PAK  +      P  +       P  + +L+S  ++  +P+PAS    YVYP+PIPEF
Sbjct: 25  LTPAKTPTSTTLFLPRPACLILHSTPHPSLSLSSPKLF-LSPLPASPPQKYVYPDPIPEF 84

Query: 74  AEVVSFPDVASLSAQFILVLRYVVALINTFRFLQETQKFKEQLSNKLAKHHETFGNDLDS 133
           AE                                ETQKFK +L  KL+K  +TFG+DLD+
Sbjct: 85  AEA-------------------------------ETQKFKSELFKKLSKDKDTFGDDLDA 144

Query: 134 VVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDH 193
           V++VC ++F  +LH EYGGPGTLLVEPFT+MF+AL E+KLPGAP+AAR SLLWAQN++DH
Sbjct: 145 VIEVCVEVFNNFLHKEYGGPGTLLVEPFTDMFVALKEKKLPGAPVAARASLLWAQNYVDH 179

Query: 194 DWKVWNS 197
           DW+VWNS
Sbjct: 205 DWEVWNS 179

[Close]

BLAST of ClCG05G025070 vs. TrEMBL
Match: A0A061E6U7_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_010229 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.0e-37
Identity = 87/187 (46.52%), Postives = 116/187 (62.03%), Query Frame = 1


Query: 14  VSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPAS----YVYPEPIPEF 73
           ++PAK  +      P  +       P  + +L+S  ++  +P+PAS    YVYP+PIPEF
Sbjct: 13  LTPAKTPTSTTLFLPRPACLILHSTPHPSLSLSSPKLF-LSPLPASPPQKYVYPDPIPEF 72

Query: 74  AEVVSFPDVASLSAQFILVLRYVVALINTFRFLQETQKFKEQLSNKLAKHHETFGNDLDS 133
           AE                                ETQKFK +L  KL+K  +TFG+DLD+
Sbjct: 73  AEA-------------------------------ETQKFKSELFKKLSKDKDTFGDDLDA 132

Query: 134 VVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDH 193
           V++VC ++F  +LH EYGGPGTLLVEPFT+MF+AL E+KLPGAP+AAR SLLWAQN++DH
Sbjct: 133 VIEVCVEVFNNFLHKEYGGPGTLLVEPFTDMFVALKEKKLPGAPVAARASLLWAQNYVDH 167

Query: 194 DWKVWNS 197
           DW+VWNS
Sbjct: 193 DWEVWNS 167

[Close]

BLAST of ClCG05G025070 vs. TAIR10
Match: AT1G10522.1 (AT1G10522.1 unknown protein)

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-26
Identity = 66/159 (41.51%), Postives = 89/159 (55.97%), Query Frame = 1


Query: 37  VKPFVNSTLTS-SFIYRATPIPASYVYPEPIPEFAEVVSFPDVASLSAQFILVLRYVVAL 96
           V+ F  S+L+   F+ RA    A Y +P+PIPEFAE                        
Sbjct: 53  VRDFSLSSLSRRGFVCRA----AEYKFPDPIPEFAEA----------------------- 112

Query: 97  INTFRFLQETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVE 156
                   ET+KF++ + NKL+K  + F + +D +V VC++IF  +L  EYGGPGTLLV 
Sbjct: 113 --------ETEKFRDHMLNKLSKR-DLFEDSVDEIVGVCTEIFETFLRSEYGGPGTLLVI 172

Query: 157 PFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVW 195
           PF +M   LNER+LPG P AAR ++ WAQ+H+D DWK W
Sbjct: 173 PFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEW 175

[Close]

BLAST of ClCG05G025070 vs. NCBI nr
Match: gi|659090864|ref|XP_008446243.1| (PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 3.1e-75
Identity = 148/199 (74.37%), Postives = 152/199 (76.38%), Query Frame = 1


Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASY
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEVVSFPDVASLSAQFILVLRYVVALINTFRFLQETQKFKEQLSNKLAKHH 120
           VYPEPIPEFAEV                               ETQKFKEQLS KLAK  
Sbjct: 61  VYPEPIPEFAEV-------------------------------ETQKFKEQLSKKLAKDR 120

Query: 121 ETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSL 180
           ETFGND DSVVDVCSKIFGEYLHVEYGGPGTL+VEPFTNMFIALNERKLPGAPLAARTSL
Sbjct: 121 ETFGNDFDSVVDVCSKIFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLPGAPLAARTSL 168

Query: 181 LWAQNHLDHDWKVWNSKGG 200
           LWAQN+LD+DW +WNSKGG
Sbjct: 181 LWAQNYLDNDWNIWNSKGG 168

[Close]

BLAST of ClCG05G025070 vs. NCBI nr
Match: gi|449434893|ref|XP_004135230.1| (PREDICTED: uncharacterized protein LOC101211725 isoform X1 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 7.1e-72
Identity = 143/199 (71.86%), Postives = 147/199 (73.87%), Query Frame = 1


Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA YG ALVS + VSPAKI  FNG HYP F  FP FVKP VN TLTSS IYRATPI ASY
Sbjct: 1   MARYGGALVSAVEVSPAKIAGFNGLHYPTFFLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEVVSFPDVASLSAQFILVLRYVVALINTFRFLQETQKFKEQLSNKLAKHH 120
           VYPEPIPEFAEV                               ETQKFKEQLS KLAK  
Sbjct: 61  VYPEPIPEFAEV-------------------------------ETQKFKEQLSKKLAKDR 120

Query: 121 ETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSL 180
           ETFGND DSVVDVCSKIFGEYLHVEYGGPGTL+VEPFTNMFIALNERKL GAPLAARTSL
Sbjct: 121 ETFGNDFDSVVDVCSKIFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLSGAPLAARTSL 168

Query: 181 LWAQNHLDHDWKVWNSKGG 200
           LWAQNHLD+DW +WNSKGG
Sbjct: 181 LWAQNHLDNDWNIWNSKGG 168

[Close]

BLAST of ClCG05G025070 vs. NCBI nr
Match: gi|700196656|gb|KGN51833.1| (hypothetical protein Csa_5G603300 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 3.1e-51
Identity = 107/148 (72.30%), Postives = 110/148 (74.32%), Query Frame = 1


Query: 52  RATPIPASYVYPEPIPEFAEVVSFPDVASLSAQFILVLRYVVALINTFRFLQETQKFKEQ 111
           RATPI ASYVYPEPIPEFAEV                               ETQKFKEQ
Sbjct: 43  RATPITASYVYPEPIPEFAEV-------------------------------ETQKFKEQ 102

Query: 112 LSNKLAKHHETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPG 171
           LS KLAK  ETFGND DSVVDVCSKIFGEYLHVEYGGPGTL+VEPFTNMFIALNERKL G
Sbjct: 103 LSKKLAKDRETFGNDFDSVVDVCSKIFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLSG 159

Query: 172 APLAARTSLLWAQNHLDHDWKVWNSKGG 200
           APLAARTSLLWAQNHLD+DW +WNSKGG
Sbjct: 163 APLAARTSLLWAQNHLDNDWNIWNSKGG 159

[Close]

BLAST of ClCG05G025070 vs. NCBI nr
Match: gi|763794184|gb|KJB61180.1| (hypothetical protein B456_009G344500 [Gossypium raimondii])

HSP 1 Score: 167.5 bits (423), Expect = 2.3e-38
Identity = 88/170 (51.76%), Postives = 106/170 (62.35%), Query Frame = 1


Query: 27  YPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVVSFPDVASLSAQFI 86
           +   SS P  VKPF+++   S            YVY +PIP+FAE               
Sbjct: 44  FSTLSSKPISVKPFLSALRASH--------SQKYVYHDPIPKFAEA-------------- 103

Query: 87  LVLRYVVALINTFRFLQETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKIFGEYLHVEY 146
                            ETQKFK +L NKL+K  + FG+DLDSV+DVC KIF ++LH EY
Sbjct: 104 -----------------ETQKFKAELFNKLSKDKDKFGDDLDSVIDVCVKIFNDFLHNEY 163

Query: 147 GGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNS 197
           GGPGTLLVEPFT+MF+AL E+KLPGAP+AAR SLLWAQNHLDHDW+VWNS
Sbjct: 164 GGPGTLLVEPFTDMFVALKEKKLPGAPVAARASLLWAQNHLDHDWEVWNS 174

[Close]

BLAST of ClCG05G025070 vs. NCBI nr
Match: gi|728824568|gb|KHG05836.1| (dna-directed rna polymerase subunit a'' [Gossypium arboreum])

HSP 1 Score: 167.2 bits (422), Expect = 3.0e-38
Identity = 100/213 (46.95%), Postives = 123/213 (57.75%), Query Frame = 1


Query: 1   MALYGCALVS-PIAVSPAKITSFN----------------GFHYPPFSSFPPFVKPFVNS 60
           MA   C+LVS P +++PAKI +                     +P  SS P  VKPF+ S
Sbjct: 1   MASSSCSLVSIPPSLTPAKIPTSTILILRNAGLILNPPPPPLSFPTLSSKPISVKPFL-S 60

Query: 61  TLTSSFIYRATPIPASYVYPEPIPEFAEVVSFPDVASLSAQFILVLRYVVALINTFRFLQ 120
            L SS   +       YVY +PIP+FAE                                
Sbjct: 61  VLRSSHSQK-------YVYHDPIPKFAEA------------------------------- 120

Query: 121 ETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIA 180
           ETQKFK +L NKL+K  + FG+DLDSV+ VC +IF ++LH EYGG GTLLVEPFT+MF+A
Sbjct: 121 ETQKFKAELFNKLSKDKDKFGDDLDSVIVVCVEIFNDFLHNEYGGSGTLLVEPFTDMFVA 174

Query: 181 LNERKLPGAPLAARTSLLWAQNHLDHDWKVWNS 197
           L E+KLPGAP+AAR SLLWAQNHLDHDW+VWNS
Sbjct: 181 LKEKKLPGAPVAARASLLWAQNHLDHDWEVWNS 174

The following BLAST results are available for this feature:

BLAST of ClCG05G025070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQC6_CUCSA	2.2e-51	72.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603300 PE=4 SV=1	[more]
A0A0D2UY70_GOSRA	1.6e-38	51.76	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G344500 PE=4 SV=1	[more]
A0A0B0N3U8_GOSAR	2.1e-38	46.95	Dna-directed rna polymerase subunit a OS=Gossypium arboreum GN=F383_31884 PE=4 S...	[more]
A0A061E7M7_THECC	1.0e-37	46.52	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_010229 PE=4 SV=1	[more]
A0A061E6U7_THECC	1.0e-37	46.52	Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_010229 PE=4 SV=1	[more]

BLAST of ClCG05G025070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10522.1	2.2e-26	41.51	unknown protein	[more]

BLAST of ClCG05G025070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090864\|ref\|XP_008446243.1\|	3.1e-75	74.37	PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo]	[more]
gi\|449434893\|ref\|XP_004135230.1\|	7.1e-72	71.86	PREDICTED: uncharacterized protein LOC101211725 isoform X1 [Cucumis sativus]	[more]
gi\|700196656\|gb\|KGN51833.1\|	3.1e-51	72.30	hypothetical protein Csa_5G603300 [Cucumis sativus]	[more]
gi\|763794184\|gb\|KJB61180.1\|	2.3e-38	51.76	hypothetical protein B456_009G344500 [Gossypium raimondii]	[more]
gi\|728824568\|gb\|KHG05836.1\|	3.0e-38	46.95	dna-directed rna polymerase subunit a'' [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G025070.1	ClCG05G025070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35987	FAMILY NOT NAMED	coord: 103..197 score: 6.3E-53coord: 57..71 score: 6.3
None	No IPR available	PANTHER	PTHR35987:SF1	SUBFAMILY NOT NAMED	coord: 57..71 score: 6.3E-53coord: 103..197 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G025070	Carg07975	Silver-seed gourd	carwcgB0371

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G025070	Wax gourd	wcgwgoB467
ClCG05G025070	Wax gourd	wcgwgoB471
ClCG05G025070	Watermelon (Charleston Gray)	wcgwcgB103
ClCG05G025070	Watermelon (Charleston Gray)	wcgwcgB155
ClCG05G025070	Cucumber (Gy14) v1	cgywcgB127
ClCG05G025070	Cucumber (Gy14) v1	cgywcgB364
ClCG05G025070	Cucumber (Gy14) v1	cgywcgB498
ClCG05G025070	Cucurbita maxima (Rimu)	cmawcgB068
ClCG05G025070	Cucurbita maxima (Rimu)	cmawcgB658
ClCG05G025070	Cucurbita maxima (Rimu)	cmawcgB660
ClCG05G025070	Cucurbita moschata (Rifu)	cmowcgB113
ClCG05G025070	Cucurbita moschata (Rifu)	cmowcgB659
ClCG05G025070	Cucurbita moschata (Rifu)	cmowcgB661
ClCG05G025070	Wild cucumber (PI 183967)	cpiwcgB063
ClCG05G025070	Wild cucumber (PI 183967)	cpiwcgB066
ClCG05G025070	Wild cucumber (PI 183967)	cpiwcgB412
ClCG05G025070	Cucumber (Chinese Long) v2	cuwcgB059
ClCG05G025070	Cucumber (Chinese Long) v2	cuwcgB062
ClCG05G025070	Cucumber (Chinese Long) v2	cuwcgB394
ClCG05G025070	Melon (DHL92) v3.5.1	mewcgB062
ClCG05G025070	Melon (DHL92) v3.5.1	mewcgB158
ClCG05G025070	Melon (DHL92) v3.5.1	mewcgB249
ClCG05G025070	Watermelon (97103) v1	wcgwmB294
ClCG05G025070	Watermelon (97103) v1	wcgwmB285
ClCG05G025070	Watermelon (97103) v1	wcgwmB308
ClCG05G025070	Cucurbita pepo (Zucchini)	cpewcgB047
ClCG05G025070	Cucurbita pepo (Zucchini)	cpewcgB333
ClCG05G025070	Cucurbita pepo (Zucchini)	cpewcgB393
ClCG05G025070	Cucurbita pepo (Zucchini)	cpewcgB395
ClCG05G025070	Bottle gourd (USVL1VR-Ls)	lsiwcgB193
ClCG05G025070	Bottle gourd (USVL1VR-Ls)	lsiwcgB283
ClCG05G025070	Bottle gourd (USVL1VR-Ls)	lsiwcgB368
ClCG05G025070	Cucumber (Gy14) v2	cgybwcgB060
ClCG05G025070	Cucumber (Gy14) v2	cgybwcgB359
ClCG05G025070	Melon (DHL92) v3.6.1	medwcgB061
ClCG05G025070	Melon (DHL92) v3.6.1	medwcgB148
ClCG05G025070	Melon (DHL92) v3.6.1	medwcgB241
ClCG05G025070	Silver-seed gourd	carwcgB0813
ClCG05G025070	Cucumber (Chinese Long) v3	cucwcgB067
ClCG05G025070	Cucumber (Chinese Long) v3	cucwcgB070
ClCG05G025070	Cucumber (Chinese Long) v3	cucwcgB415
ClCG05G025070	Watermelon (97103) v2	wcgwmbB217
ClCG05G025070	Watermelon (97103) v2	wcgwmbB229
ClCG05G025070	Watermelon (97103) v2	wcgwmbB235