Carg06194 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06194
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	PRA1 family protein
Location	Cucurbita_argyrosperma_scaffold_016 : 226162 .. 227918 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTGTGAAGTGGAACTAGTGAGAGATGTGAAAGTGGTGGCTGAAAAGGCAGATAGAGATGGTCTCAACTTCCAGAGGTACATTATGGCACGTCTATTAGAGAACTTATTGAAGGAGAGGGCCAGCAAAGACCATGGCTATTTTATTGCTGTTACTAGCTTGAAGAGCATAGGCAAGGGACAGTGCAAGAATAAATCTCAGTATGTTACATTCCCCATTACCTTTGGCTGCCGAACCTTTGTGCCTTCAGGGGGAGAAATCTTGCTTGGAGTTGTTCGTCACGTATTTCGTCGCGGATTGCTCCTAAAATGTGGACCGATCAACTACGTGTTTCTTTCATCTCGTAAAATGCCAACCTACCATTATGTTGGTGGTAAGAATCCTGTGTTCTCAAGCAACGAATTCGCCACGATTCGAACCGAGAGCGCTGTACGGTTCAATGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGCATCAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAGCAACACACTTGGACCCATTTCATTGTCGGAAGCCGATGAGTTAGGCTTGCAAACTTAGAACAACACACAAATTTGGTAATGCCGATTTCTTCCCTTCTGCATCTTTCTGTTTGTTCTTACTTTTTGGCAAATGATAATTCATTTGAGTGTCTTGATTTAAGGACGTCCGAGGGCAGGATGCATTGAATCTTATTAGTTGGAGATGCTAGACAGTACTGTTCAATCCAAATATATCCCATATCAACTAATCAAGCTTTTGGTATTGAAGATCCAAACAGATGATGCCATATTTCCATATTTCCAATCACTGCTTTGGATGTCTATGTCTTACTATCTAACCCAGTTCCAGTTGTTGCTGTTGTTTTCGAATCAGATTCGTTGTAATCGACCTATGAAATAAGAACTTATTGTTCATCTCTACCTTTTAGAAATTGATGTATTGTAAAAAAATTAAATCTTTTTACAGCTTATTTGACAATTAAAATAGTCGTTGTTTCTATTTATTTCAATTTTAAAGATACATAATTTAAATAATTAATTTGGTGGAAAAATAAATTACCTTTTTTTTTTTTTTTTTTTTCAACTTTCACCGAATAGAAATTGTCATTAGAGTGGACCGATCATTTTGATTGGAGCTTGGGATCTTCCACTCTCGACAGTCATTACCAGCCTTGCTCCGGCCAAAATTTCCAGGCTTTTATCCCAATGTCGACCGCTGAATTCGCCGTCACTTTCAAGGAAGCCGGTCGATCCGTCATCGCCACCCGCCGTCCATGGCGGGAATTCCTCGACCCATTGTCTCTCAGCCTTCCTTCTTCCCTCTCCGACGCGACCTCTCGGATTTCTCAGAACTTGACCCGTTTCCTTTCCAATTACTGTCTTGTCGTCTTGCTTCTCATATTTCTTGGCCTCATCTACCATCCCTTTTCCATGATTGTGTTCTTCCTTGTGTTTGTTGCCTGGTTCGTCCTTTACTTCTCCCGCGACGACCCAATTAGGGTTTTTGGTTTTGAGTTGGGAGATTTTGTTTTGGTCATCATTCTTGGGTTGGCTACCGGATTGGCGCTGGCTTTGACAGGGGTTTTCGTGAATGTGCTGATTTCGCTTGCCATTGGGGCCATGGTGGTTTGTTTGCATGCGGCTTTGAAGGGCACGGAGGATGCTCTTGGGGATTTGCAAGACCCTTTTGGGGATACGCTGTTGGAGAGCCCGAGAGGTGATTACAGCGGCATCTGA

mRNA sequence

ATGTTTTGTGAAGTGGAACTAGTGAGAGATGTGAAAGTGGTGGCTGAAAAGGCAGATAGAGATGGTCTCAACTTCCAGAGGTACATTATGGCACGTCTATTAGAGAACTTATTGAAGGAGAGGGCCAGCAAAGACCATGGCTATTTTATTGCTGTTACTAGCTTGAAGAGCATAGGCAAGGGACAGTGCAAGAATAAATCTCAGTATGTTACATTCCCCATTACCTTTGGCTGCCGAACCTTTGTGCCTTCAGGGGGAGAAATCTTGCTTGGAGTTGTTCGTCACGTATTTCGTCGCGGATTGCTCCTAAAATGTGGACCGATCAACTACGTGTTTCTTTCATCTCGTAAAATGCCAACCTACCATTATGTTGGTGGTAAGAATCCTGTGTTCTCAAGCAACGAATTCGCCACGATTCGAACCGAGAGCGCTGTACGGTTCAATGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGCATCAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAGCAACACACTTGGACCCATTTCATTGTCGGAAGCCGATGACTTGGGATCTTCCACTCTCGACAGTCATTACCAGCCTTGCTCCGGCCAAAATTTCCAGGCTTTTATCCCAATGTCGACCGCTGAATTCGCCGTCACTTTCAAGGAAGCCGGTCGATCCGTCATCGCCACCCGCCGTCCATGGCGGGAATTCCTCGACCCATTGTCTCTCAGCCTTCCTTCTTCCCTCTCCGACGCGACCTCTCGGATTTCTCAGAACTTGACCCGTTTCCTTTCCAATTACTGTCTTGTCGTCTTGCTTCTCATATTTCTTGGCCTCATCTACCATCCCTTTTCCATGATTGTGTTCTTCCTTGTGTTTGTTGCCTGGTTCGTCCTTTACTTCTCCCGCGACGACCCAATTAGGGTTTTTGGTTTTGAGTTGGGAGATTTTGTTTTGGTCATCATTCTTGGGTTGGCTACCGGATTGGCGCTGGCTTTGACAGGGGTTTTCGTGAATGTGCTGATTTCGCTTGCCATTGGGGCCATGGTGGTTTGTTTGCATGCGGCTTTGAAGGGCACGGAGGATGCTCTTGGGGATTTGCAAGACCCTTTTGGGGATACGCTGTTGGAGAGCCCGAGAGGTGATTACAGCGGCATCTGA

Coding sequence (CDS)

ATGTTTTGTGAAGTGGAACTAGTGAGAGATGTGAAAGTGGTGGCTGAAAAGGCAGATAGAGATGGTCTCAACTTCCAGAGGTACATTATGGCACGTCTATTAGAGAACTTATTGAAGGAGAGGGCCAGCAAAGACCATGGCTATTTTATTGCTGTTACTAGCTTGAAGAGCATAGGCAAGGGACAGTGCAAGAATAAATCTCAGTATGTTACATTCCCCATTACCTTTGGCTGCCGAACCTTTGTGCCTTCAGGGGGAGAAATCTTGCTTGGAGTTGTTCGTCACGTATTTCGTCGCGGATTGCTCCTAAAATGTGGACCGATCAACTACGTGTTTCTTTCATCTCGTAAAATGCCAACCTACCATTATGTTGGTGGTAAGAATCCTGTGTTCTCAAGCAACGAATTCGCCACGATTCGAACCGAGAGCGCTGTACGGTTCAATGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGCATCAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAGCAACACACTTGGACCCATTTCATTGTCGGAAGCCGATGACTTGGGATCTTCCACTCTCGACAGTCATTACCAGCCTTGCTCCGGCCAAAATTTCCAGGCTTTTATCCCAATGTCGACCGCTGAATTCGCCGTCACTTTCAAGGAAGCCGGTCGATCCGTCATCGCCACCCGCCGTCCATGGCGGGAATTCCTCGACCCATTGTCTCTCAGCCTTCCTTCTTCCCTCTCCGACGCGACCTCTCGGATTTCTCAGAACTTGACCCGTTTCCTTTCCAATTACTGTCTTGTCGTCTTGCTTCTCATATTTCTTGGCCTCATCTACCATCCCTTTTCCATGATTGTGTTCTTCCTTGTGTTTGTTGCCTGGTTCGTCCTTTACTTCTCCCGCGACGACCCAATTAGGGTTTTTGGTTTTGAGTTGGGAGATTTTGTTTTGGTCATCATTCTTGGGTTGGCTACCGGATTGGCGCTGGCTTTGACAGGGGTTTTCGTGAATGTGCTGATTTCGCTTGCCATTGGGGCCATGGTGGTTTGTTTGCATGCGGCTTTGAAGGGCACGGAGGATGCTCTTGGGGATTTGCAAGACCCTTTTGGGGATACGCTGTTGGAGAGCCCGAGAGGTGATTACAGCGGCATCTGA

Protein sequence

MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGKGQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPTYHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPISLSEADDLGSSTLDSHYQPCSGQNFQAFIPMSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATGLALALTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI

Homology

[Close]

BLAST of Carg06194 vs. NCBI nr
Match: XP_022935102.1 (DNA-directed RNA polymerase V subunit 7-like isoform X2 [Cucurbita moschata] >XP_022935110.1 DNA-directed RNA polymerase V subunit 7-like isoform X2 [Cucurbita moschata] >XP_022935117.1 DNA-directed RNA polymerase V subunit 7-like isoform X2 [Cucurbita moschata] >XP_022974400.1 DNA-directed RNA polymerase V subunit 7-like isoform X2 [Cucurbita maxima] >XP_022974401.1 DNA-directed RNA polymerase V subunit 7-like isoform X2 [Cucurbita maxima] >XP_022974402.1 DNA-directed RNA polymerase V subunit 7-like isoform X2 [Cucurbita maxima] >XP_023521330.1 DNA-directed RNA polymerase V subunit 7-like [Cucurbita pepo subsp. pepo] >XP_023538726.1 DNA-directed RNA polymerase V subunit 7-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023538727.1 DNA-directed RNA polymerase V subunit 7-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023538728.1 DNA-directed RNA polymerase V subunit 7-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023538729.1 DNA-directed RNA polymerase V subunit 7-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.8 bits (987), Expect = 3.4e-103
Identity = 189/192 (98.44%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK
Sbjct: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60

Query: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120
           GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT
Sbjct: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120

Query: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 180
           YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI
Sbjct: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 180

Query: 181 SLSEADDLGSST 193
           SLSEAD+LG  T
Sbjct: 181 SLSEADELGLQT 192

[Close]

BLAST of Carg06194 vs. NCBI nr
Match: XP_022935087.1 (DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita moschata] >XP_022935095.1 DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 384.8 bits (987), Expect = 3.4e-103
Identity = 189/192 (98.44%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK
Sbjct: 21  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 80

Query: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120
           GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT
Sbjct: 81  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 140

Query: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 180
           YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI
Sbjct: 141 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 200

Query: 181 SLSEADDLGSST 193
           SLSEAD+LG  T
Sbjct: 201 SLSEADELGLQT 212

[Close]

BLAST of Carg06194 vs. NCBI nr
Match: XP_022974397.1 (DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita maxima] >XP_022974398.1 DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita maxima] >XP_022974399.1 DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 384.8 bits (987), Expect = 3.4e-103
Identity = 189/192 (98.44%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK
Sbjct: 21  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 80

Query: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120
           GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT
Sbjct: 81  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 140

Query: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 180
           YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI
Sbjct: 141 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 200

Query: 181 SLSEADDLGSST 193
           SLSEAD+LG  T
Sbjct: 201 SLSEADELGLQT 212

[Close]

BLAST of Carg06194 vs. NCBI nr
Match: XP_023538723.1 (DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023538724.1 DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.8 bits (987), Expect = 3.4e-103
Identity = 189/192 (98.44%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK
Sbjct: 21  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 80

Query: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120
           GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT
Sbjct: 81  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 140

Query: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 180
           YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI
Sbjct: 141 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 200

Query: 181 SLSEADDLGSST 193
           SLSEAD+LG  T
Sbjct: 201 SLSEADELGLQT 212

[Close]

BLAST of Carg06194 vs. NCBI nr
Match: XP_023538725.1 (DNA-directed RNA polymerase V subunit 7-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.8 bits (987), Expect = 3.4e-103
Identity = 189/192 (98.44%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK
Sbjct: 5   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 64

Query: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120
           GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT
Sbjct: 65  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 124

Query: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 180
           YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI
Sbjct: 125 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 184

Query: 181 SLSEADDLGSST 193
           SLSEAD+LG  T
Sbjct: 185 SLSEADELGLQT 196

[Close]

BLAST of Carg06194 vs. TAIR10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 151.8 bits (382), Expect = 8.9e-37
Identity = 76/181 (41.99%), Postives = 117/181 (64.64%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MF +V+L  +V + AE  D  GL  +R I+  LLE    ++A+K+ GY++AVT+L  IG+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120
           G+ +  +  V FP+ F   TF    GEI+ GVV  V + G+ ++CGPI  V+LS  KMP 
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 180
           Y Y+ G+NP+F + + + I+ E+ VR  V+G++W+E    +++EF  LASLEG + LGP+
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWME----VEREFQALASLEG-DYLGPL 176

Query: 181 S 182
           S
Sbjct: 181 S 176

[Close]

BLAST of Carg06194 vs. TAIR10
Match: AT4G14520.1 (DNA-directed RNA polymerase II-related)

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-36
Identity = 76/199 (38.19%), Postives = 125/199 (62.81%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MF EVE+ RDV + A+    +G +  + I+ RLL++L+ E+A ++HG+++ +T+LKSIG 
Sbjct: 1   MFSEVEMARDVAICAKHL--NGQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 61  GQCKN-------KSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFL 120
            +  N       +++ +TFP++F CRTF+P+ G+IL G V+ V   G  ++ GP+ Y +L
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 121 SSRKMPTYHYVGG-----KNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVML 180
           S  KMP YHYV       + P F  ++ + I     VRF VL VR+ E+    + ++ +L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

Query: 181 ASLEGSNTLGPISLSEADD 188
           A+LEG+ + GPISL+ +D+
Sbjct: 181 ATLEGNGSFGPISLTGSDE 197

[Close]

BLAST of Carg06194 vs. TAIR10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-31
Identity = 76/179 (42.46%), Postives = 107/179 (59.78%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MF +V+L  DV + AE  D  GL  QR I+ RLLE   KE+A+KD GY I  T L++IG+
Sbjct: 1   MFIKVKLPWDVTIPAEDMD-TGLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120
           G+ K ++  + FP+ F    F    GEI+ GVV  V + G+ LK GP   ++LS  KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGP 180
           Y ++ G+NP F +   + I+  + VRF VL   W E     +K+F+ LAS++G N LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWRE----AEKDFMALASIDGDN-LGP 173

[Close]

BLAST of Carg06194 vs. TAIR10
Match: AT1G04260.1 (CAMV movement protein interacting protein 7)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-30
Identity = 71/173 (41.04%), Postives = 111/173 (64.16%), Query Frame = 0


Query: 221 KEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLI 280
           KE  +S+    RPW +FLD  + S PSS++DAT+R++QNLT F  NY +++ +L+ L LI
Sbjct: 10  KETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLI 69

Query: 281 YHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATXXXXXXTGVFVNV 340
             P +++ F  V +AWF LYF+R++P+ +FGF + D ++ ++L   +      TGV++  
Sbjct: 70  TRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGVWLRA 129

Query: 341 LISLAIGAMVVCLHAALKGTEDALG-DLQDPFGDTLLES------PRGDYSGI 387
           L ++  G +V+ LHAAL+GT+D +  DL+ P+G  L  S       RGDYSGI
Sbjct: 130 LTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGGGNDGARGDYSGI 182

[Close]

BLAST of Carg06194 vs. TAIR10
Match: AT1G08770.1 (prenylated RAB acceptor 1.E)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-27
Identity = 67/148 (45.27%), Postives = 93/148 (62.84%), Query Frame = 0


Query: 221 KEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLI 280
           K+  +S+I T RPWRE LD  +LSLP    +A + +  N++ F  NY L VL ++FLGLI
Sbjct: 37  KQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLI 96

Query: 281 YHPFSMIVFFLVFVAWFVLYFSRD--DPIRVFGFELGDFVLVIILGLATXXXXXXTGVFV 340
           YHP SMI F +VF+ W +LYFSRD  D I + G E+ D +++++L L T      T V  
Sbjct: 97  YHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGE 156

Query: 341 NVLISLAIGAMVVCLHAALKGTEDALGD 367
           NVL+SL IG ++V  H A + T+D   D
Sbjct: 157 NVLVSLIIGLLIVGAHGAFRNTDDLFLD 184

[Close]

BLAST of Carg06194 vs. Swiss-Prot
Match: sp|A6QRA1|NRPE7_ARATH (DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPE7 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.6e-35
Identity = 76/181 (41.99%), Postives = 117/181 (64.64%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MF +V+L  +V + AE  D  GL  +R I+  LLE    ++A+K+ GY++AVT+L  IG+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120
           G+ +  +  V FP+ F   TF    GEI+ GVV  V + G+ ++CGPI  V+LS  KMP 
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 180
           Y Y+ G+NP+F + + + I+ E+ VR  V+G++W+E    +++EF  LASLEG + LGP+
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWME----VEREFQALASLEG-DYLGPL 176

Query: 181 S 182
           S
Sbjct: 181 S 176

[Close]

BLAST of Carg06194 vs. Swiss-Prot
Match: sp|Q6NML5|RPB7L_ARATH (DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB7L PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.1e-35
Identity = 76/199 (38.19%), Postives = 125/199 (62.81%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MF EVE+ RDV + A+    +G +  + I+ RLL++L+ E+A ++HG+++ +T+LKSIG 
Sbjct: 1   MFSEVEMARDVAICAKHL--NGQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 61  GQCKN-------KSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFL 120
            +  N       +++ +TFP++F CRTF+P+ G+IL G V+ V   G  ++ GP+ Y +L
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 121 SSRKMPTYHYVGG-----KNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVML 180
           S  KMP YHYV       + P F  ++ + I     VRF VL VR+ E+    + ++ +L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

Query: 181 ASLEGSNTLGPISLSEADD 188
           A+LEG+ + GPISL+ +D+
Sbjct: 181 ATLEGNGSFGPISLTGSDE 197

[Close]

BLAST of Carg06194 vs. Swiss-Prot
Match: sp|Q8LE42|NRPD7_ARATH (DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPD7 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.7e-30
Identity = 76/179 (42.46%), Postives = 107/179 (59.78%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MF +V+L  DV + AE  D  GL  QR I+ RLLE   KE+A+KD GY I  T L++IG+
Sbjct: 1   MFIKVKLPWDVTIPAEDMD-TGLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120
           G+ K ++  + FP+ F    F    GEI+ GVV  V + G+ LK GP   ++LS  KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGP 180
           Y ++ G+NP F +   + I+  + VRF VL   W E     +K+F+ LAS++G N LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWRE----AEKDFMALASIDGDN-LGP 173

[Close]

BLAST of Carg06194 vs. Swiss-Prot
Match: sp|P93829|PRA1D_ARATH (PRA1 family protein D OS=Arabidopsis thaliana OX=3702 GN=PRA1D PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.9e-29
Identity = 71/173 (41.04%), Postives = 111/173 (64.16%), Query Frame = 0


Query: 221 KEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLI 280
           KE  +S+    RPW +FLD  + S PSS++DAT+R++QNLT F  NY +++ +L+ L LI
Sbjct: 10  KETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLI 69

Query: 281 YHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATXXXXXXTGVFVNV 340
             P +++ F  V +AWF LYF+R++P+ +FGF + D ++ ++L   +      TGV++  
Sbjct: 70  TRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGVWLRA 129

Query: 341 LISLAIGAMVVCLHAALKGTEDALG-DLQDPFGDTLLES------PRGDYSGI 387
           L ++  G +V+ LHAAL+GT+D +  DL+ P+G  L  S       RGDYSGI
Sbjct: 130 LTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGGGNDGARGDYSGI 182

[Close]

BLAST of Carg06194 vs. Swiss-Prot
Match: sp|Q9FRR1|PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.8e-26
Identity = 67/148 (45.27%), Postives = 93/148 (62.84%), Query Frame = 0


Query: 221 KEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLVVLLLIFLGLI 280
           K+  +S+I T RPWRE LD  +LSLP    +A + +  N++ F  NY L VL ++FLGLI
Sbjct: 37  KQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLI 96

Query: 281 YHPFSMIVFFLVFVAWFVLYFSRD--DPIRVFGFELGDFVLVIILGLATXXXXXXTGVFV 340
           YHP SMI F +VF+ W +LYFSRD  D I + G E+ D +++++L L T      T V  
Sbjct: 97  YHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGE 156

Query: 341 NVLISLAIGAMVVCLHAALKGTEDALGD 367
           NVL+SL IG ++V  H A + T+D   D
Sbjct: 157 NVLVSLIIGLLIVGAHGAFRNTDDLFLD 184

[Close]

BLAST of Carg06194 vs. TrEMBL
Match: tr|A0A1S3AWE2|A0A1S3AWE2_CUCME (DNA-directed RNA polymerase V subunit 7-like OS=Cucumis melo OX=3656 GN=LOC103483648 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.3e-76
Identity = 142/187 (75.94%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MF EVELVRDV++  EK  RD  NFQRYI+  LLENLLKE+A+KDHGYF++VTSLKSIGK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLKSIGK 60

Query: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120
           G  KN+SQ V+FPITF CRTF+P  GEIL GVVRH+F+RGLLLKCGPI Y FLS+RKMPT
Sbjct: 61  GVVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYAFLSARKMPT 120

Query: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 180
           Y YVGG+NPVFSS EFATI  +  VRF+VLGVRWIEKRGCIKKEFVMLASLEG+N+LGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 181 SLSEADD 188
           SLS++D+
Sbjct: 181 SLSDSDE 187

[Close]

BLAST of Carg06194 vs. TrEMBL
Match: tr|A0A0A0L5A3|A0A0A0L5A3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G143540 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.3e-76
Identity = 142/187 (75.94%), Postives = 164/187 (87.70%), Query Frame = 0


Query: 1   MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 60
           MF EVELVRDV++  EK  RD  NFQRYI+  LLENLLKE+A+KDHGYF++VTSL+SIGK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLRSIGK 60

Query: 61  GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 120
           G  KN+SQ V+FPITF CRTF+P  GEIL GVVRH+F+RGLLLKCGPI YVFLS+RKMPT
Sbjct: 61  GIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYVFLSARKMPT 120

Query: 121 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 180
           Y YVGG+NPVFSS EFATI  +  VRF+VLGVRWIEKRGCIKKEFVMLASLEG+N+LGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 181 SLSEADD 188
           SLS++D+
Sbjct: 181 SLSDSDE 187

[Close]

BLAST of Carg06194 vs. TrEMBL
Match: tr|A0A1S3AXE4|A0A1S3AXE4_CUCME (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103483647 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 9.0e-68
Identity = 148/176 (84.09%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 211 MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 270
           MSTAEFAVTFKEAGRSVIATRRPWREFLDP +LSLPSSLSDAT+RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 271 VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATXXX 330
           VLLLIFLGLIYHPFSMIVF LVFVAWF LYFSRDDPIRVFGFEL D VL+IILGLA XXX
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLAXXXX 120

Query: 331 XXXTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 387
           XXX           AIGA+VVCLHAAL+ TED +GD+QDPFGD LLESPRGDYSGI
Sbjct: 121 XXXXXXXXXXXXXXAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRGDYSGI 176

[Close]

BLAST of Carg06194 vs. TrEMBL
Match: tr|A0A0A0L7A7|A0A0A0L7A7_CUCSA (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G143550 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 9.0e-68
Identity = 148/176 (84.09%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 211 MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 270
           MSTAEFAVTFKEAGRSVIATRRPWREFLDP +LSLPSSLSDAT+RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 271 VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATXXX 330
           VLLLIFLGLIYHPFSMIVF LVFVAWF LYFSRDDPIRVFGFEL D VL+IILGLA XXX
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLAXXXX 120

Query: 331 XXXTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRGDYSGI 387
           XXX           AIGA+VVCLHAAL+ TED +GD+QDPFGD LLESPRGDYSGI
Sbjct: 121 XXXXXXXXXXXXXXAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRGDYSGI 176

[Close]

BLAST of Carg06194 vs. TrEMBL
Match: tr|A0A1S4DSV7|A0A1S4DSV7_CUCME (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103483647 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.6e-64
Identity = 143/171 (83.63%), Postives = 150/171 (87.72%), Query Frame = 0


Query: 211 MSTAEFAVTFKEAGRSVIATRRPWREFLDPLSLSLPSSLSDATSRISQNLTRFLSNYCLV 270
           MSTAEFAVTFKEAGRSVIATRRPWREFLDP +LSLPSSLSDAT+RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 271 VLLLIFLGLIYHPFSMIVFFLVFVAWFVLYFSRDDPIRVFGFELGDFVLVIILGLATXXX 330
           VLLLIFLGLIYHPFSMIVF LVFVAWF LYFSRDDPIRVFGFEL D VL+IILGLA XXX
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLAXXXX 120

Query: 331 XXXTGVFVNVLISLAIGAMVVCLHAALKGTEDALGDLQDPFGDTLLESPRG 382
           XXX           AIGA+VVCLHAAL+ TED +GD+QDPFGD LLESPRG
Sbjct: 121 XXXXXXXXXXXXXXAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRG 171

The following BLAST results are available for this feature:

BLAST of Carg06194 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935102.1	3.4e-103	98.44	DNA-directed RNA polymerase V subunit 7-like isoform X2 [Cucurbita moschata] >XP...	[more]
XP_022935087.1	3.4e-103	98.44	DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita moschata] >XP...	[more]
XP_022974397.1	3.4e-103	98.44	DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita maxima] >XP_0...	[more]
XP_023538723.1	3.4e-103	98.44	DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita pepo subsp. p...	[more]
XP_023538725.1	3.4e-103	98.44	DNA-directed RNA polymerase V subunit 7-like isoform X2 [Cucurbita pepo subsp. p...	[more]

BLAST of Carg06194 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14660.1	8.9e-37	41.99	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT4G14520.1	3.4e-36	38.19	DNA-directed RNA polymerase II-related	[more]
AT3G22900.1	1.5e-31	42.46	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT1G04260.1	1.6e-30	41.04	CAMV movement protein interacting protein 7	[more]
AT1G08770.1	3.7e-27	45.27	prenylated RAB acceptor 1.E	[more]

BLAST of Carg06194 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A6QRA1\|NRPE7_ARATH	1.6e-35	41.99	DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPE7...	[more]
sp\|Q6NML5\|RPB7L_ARATH	6.1e-35	38.19	DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana OX=37...	[more]
sp\|Q8LE42\|NRPD7_ARATH	2.7e-30	42.46	DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]
sp\|P93829\|PRA1D_ARATH	2.9e-29	41.04	PRA1 family protein D OS=Arabidopsis thaliana OX=3702 GN=PRA1D PE=1 SV=1	[more]
sp\|Q9FRR1\|PRA1E_ARATH	6.8e-26	45.27	PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1	[more]

BLAST of Carg06194 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWE2\|A0A1S3AWE2_CUCME	5.3e-76	75.94	DNA-directed RNA polymerase V subunit 7-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A0A0L5A3\|A0A0A0L5A3_CUCSA	5.3e-76	75.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G143540 PE=4 SV=1	[more]
tr\|A0A1S3AXE4\|A0A1S3AXE4_CUCME	9.0e-68	84.09	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103483647 PE=3 SV=1	[more]
tr\|A0A0A0L7A7\|A0A0A0L7A7_CUCSA	9.0e-68	84.09	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G143550 PE=3 SV=1	[more]
tr\|A0A1S4DSV7\|A0A1S4DSV7_CUCME	1.6e-64	83.63	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103483647 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR004895	Prenylated_rab_accept_PRA1
IPR036898	RNA_pol_Rpb7-like_N_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06194-RA	Carg06194-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	G3DSA:3.30.1490.120		coord: 1..83 e-value: 3.7E-10 score: 42.1
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	SSF88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..81
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 228..363 e-value: 1.9E-39 score: 134.4
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 85..181 e-value: 7.4E-13 score: 50.3
None	No IPR available	PANTHER	PTHR12709:SF3	DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 7-RELATED	coord: 1..180
None	No IPR available	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..180

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06194	Cla007558	Watermelon (97103) v1	carwmB0962
Carg06194	Cla021567	Watermelon (97103) v1	carwmB0961
Carg06194	Csa2G193330	Cucumber (Chinese Long) v2	carcuB0974
Carg06194	Csa3G143540	Cucumber (Chinese Long) v2	carcuB0975
Carg06194	MELO3C006473	Melon (DHL92) v3.5.1	carmeB0941
Carg06194	MELO3C026776	Melon (DHL92) v3.5.1	carmeB0939
Carg06194	ClCG05G004640	Watermelon (Charleston Gray)	carwcgB0935
Carg06194	CSPI02G10660	Wild cucumber (PI 183967)	carcpiB0995
Carg06194	CSPI03G12500	Wild cucumber (PI 183967)	carcpiB0998
Carg06194	Cucsa.383860	Cucumber (Gy14) v1	carcgyB1080
Carg06194	Cucsa.254890	Cucumber (Gy14) v1	carcgyB1077
Carg06194	CmaCh14G017760	Cucurbita maxima (Rimu)	carcmaB1320
Carg06194	CmaCh17G001800	Cucurbita maxima (Rimu)	carcmaB1321
Carg06194	CmaCh06G013410	Cucurbita maxima (Rimu)	carcmaB1325
Carg06194	CmoCh17G001770	Cucurbita moschata (Rifu)	carcmoB1285
Carg06194	CmoCh06G013530	Cucurbita moschata (Rifu)	carcmoB1288
Carg06194	CmoCh14G018130	Cucurbita moschata (Rifu)	carcmoB1284
Carg06194	Lsi09G012640	Bottle gourd (USVL1VR-Ls)	carlsiB876
Carg06194	Lsi05G016670	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06194	Cp4.1LG08g03750	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06194	Cp4.1LG12g01550	Cucurbita pepo (Zucchini)	carcpeB1328
Carg06194	CsGy3G012640	Cucumber (Gy14) v2	carcgybB0948
Carg06194	MELO3C026776.2	Melon (DHL92) v3.6.1	carmedB0945
Carg06194	MELO3C006473.2	Melon (DHL92) v3.6.1	carmedB0947
Carg06194	CsaV3_2G013070	Cucumber (Chinese Long) v3	carcucB1001
Carg06194	CsaV3_3G012620	Cucumber (Chinese Long) v3	carcucB1003
Carg06194	Cla97C05G085670	Watermelon (97103) v2	carwmbB1008
Carg06194	Cla97C06G116290	Watermelon (97103) v2	carwmbB1009
Carg06194	Bhi12G001476	Wax gourd	carwgoB1114
Carg06194	BhiUN393G9	Wax gourd	carwgoB1125

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06194	Carg10069	Silver-seed gourd	carcarB266
Carg06194	Carg16589	Silver-seed gourd	carcarB274
Carg06194	Carg08987	Silver-seed gourd	carcarB610

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06194	Cucumber (Gy14) v2	carcgybB0945
Carg06194	Cucurbita maxima (Rimu)	carcmaB1318
Carg06194	Cucurbita maxima (Rimu)	carcmaB1323
Carg06194	Cucurbita maxima (Rimu)	carcmaB1327
Carg06194	Cucurbita maxima (Rimu)	carcmaB1328
Carg06194	Cucurbita moschata (Rifu)	carcmoB1289
Carg06194	Cucurbita moschata (Rifu)	carcmoB1290
Carg06194	Cucurbita pepo (Zucchini)	carcpeB1330
Carg06194	Cucurbita pepo (Zucchini)	carcpeB1331
Carg06194	Bottle gourd (USVL1VR-Ls)	carlsiB877
Carg06194	Watermelon (Charleston Gray)	carwcgB0934
Carg06194	Watermelon (Charleston Gray)	carwcgB0936
Carg06194	Watermelon (97103) v1	carwmB0959
Carg06194	Watermelon (97103) v2	carwmbB1013