CmoCh17G001770 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G001770
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-directed RNA polymerase II subunit RPB7
Location	Cmo_Chr17 : 1037064 .. 1037591 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTCAAAGTGCAGCTGCCATGGAATGTCATAATCCCTGCTGAAAACTTAGATGCAAAGGGCTTGATGCTCCAAAGGTCTATTATAATCCGTCTGCTAGATGAATTTGCCACAAAAAAGGCCACAAAGGATCTCGGTTATTTCCTCGCAGTTACGACTCTAGAAAATATAGGAGAAGGGAAAGTTCGACAGACGGGTGACGTCTTGTTTCCAGTTGTCTTTAGTGGTATCACCTTCAAGCTTTATAGGGGAGAGATCTTGGAGGGGGTTGTTCACAAGGTTCTCAAGCATGGTGTTTTCTTGAGATGTGGCCCTGTTGAGAACATATATCTCTCTTATCTGAAAATGCCAGATTACCGCTATGTGCCGGGCGAGAATCCCCTGTTCATGAACGACAAGCTTTCAAAAATTGAGAAAGATGTAGTCGTACGTTTTATCGTCATTGGAACGAAGTGGCTCGAGGCAGAAAGGGAGTTTCAGGCACTGGTGAGTTTGGAGGGTGATTATCTAGGGCCAGTTTCTTAA

mRNA sequence

ATGTTTCTCAAAGTGCAGCTGCCATGGAATGTCATAATCCCTGCTGAAAACTTAGATGCAAAGGGCTTGATGCTCCAAAGGTCTATTATAATCCGTCTGCTAGATGAATTTGCCACAAAAAAGGCCACAAAGGATCTCGGTTATTTCCTCGCAGTTACGACTCTAGAAAATATAGGAGAAGGGAAAGTTCGACAGACGGGTGACGTCTTGTTTCCAGTTGTCTTTAGTGGTATCACCTTCAAGCTTTATAGGGGAGAGATCTTGGAGGGGGTTGTTCACAAGGTTCTCAAGCATGGTGTTTTCTTGAGATGTGGCCCTGTTGAGAACATATATCTCTCTTATCTGAAAATGCCAGATTACCGCTATGTGCCGGGCGAGAATCCCCTGTTCATGAACGACAAGCTTTCAAAAATTGAGAAAGATGTAGTCGTACGTTTTATCGTCATTGGAACGAAGTGGCTCGAGGCAGAAAGGGAGTTTCAGGCACTGGTGAGTTTGGAGGGTGATTATCTAGGGCCAGTTTCTTAA

Coding sequence (CDS)

ATGTTTCTCAAAGTGCAGCTGCCATGGAATGTCATAATCCCTGCTGAAAACTTAGATGCAAAGGGCTTGATGCTCCAAAGGTCTATTATAATCCGTCTGCTAGATGAATTTGCCACAAAAAAGGCCACAAAGGATCTCGGTTATTTCCTCGCAGTTACGACTCTAGAAAATATAGGAGAAGGGAAAGTTCGACAGACGGGTGACGTCTTGTTTCCAGTTGTCTTTAGTGGTATCACCTTCAAGCTTTATAGGGGAGAGATCTTGGAGGGGGTTGTTCACAAGGTTCTCAAGCATGGTGTTTTCTTGAGATGTGGCCCTGTTGAGAACATATATCTCTCTTATCTGAAAATGCCAGATTACCGCTATGTGCCGGGCGAGAATCCCCTGTTCATGAACGACAAGCTTTCAAAAATTGAGAAAGATGTAGTCGTACGTTTTATCGTCATTGGAACGAAGTGGCTCGAGGCAGAAAGGGAGTTTCAGGCACTGGTGAGTTTGGAGGGTGATTATCTAGGGCCAGTTTCTTAA

Homology

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BLAST of CmoCh17G001770 vs. Swiss-Prot
Match: NRPE7_ARATH (DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana GN=NRPE7 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.9e-77
Identity = 128/176 (72.73%), Postives = 162/176 (92.05%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNV+IPAEN+DAKGLML+R+I++ LL+ FA+KKATK+LGY++AVTTL+ IGE
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GKVRQ-TGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GK+R+ TG+VLFPV+FSG+TFK+++GEI+ GVVHKVLKHGVF+RCGP+EN+YLSY KMPD
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           Y+Y+PGENP+FMN+K S+I+ +  VR +VIG KW+E EREFQAL SLEGDYLGP+S
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLS 176

[Close]

BLAST of CmoCh17G001770 vs. Swiss-Prot
Match: NRPD7_ARATH (DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana GN=NRPD7 PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.5e-59
Identity = 107/174 (61.49%), Postives = 142/174 (81.61%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MF+KV+LPW+V IPAE++D  GLMLQR+I+IRLL+ F+ +KATKDLGY +  T LENIGE
Sbjct: 1   MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 61  GKVR-QTGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GK++ QTG++ FPVVF+GI FK+++GEI+ GVVHKV K GVFL+ GP E IYLS++KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 121 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGP 174
           Y ++PGENP FMN  +S+I+    VRF+V+ T+W EAE++F AL S++GD LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173

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BLAST of CmoCh17G001770 vs. Swiss-Prot
Match: RPB7L_ARATH (DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana GN=NRPB7L PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-24
Identity = 74/193 (38.34%), Postives = 107/193 (55.44%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MF +V++  +V I A++L+  G    + I+ RLL +   +KA ++ G++L +T L++IG 
Sbjct: 1   MFSEVEMARDVAICAKHLN--GQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 61  GKVR--------QTGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYL 120
            K          Q   + FPV F+  TF   RG+IL+G V KVL +G F+R GP+   YL
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 121 SYLKMPDYRYV-----PGENPLFMNDKLSKIEKDVVVRFIVIGTKWLE----AEREFQAL 176
           S LKMP Y YV       E P F  D LSKI   VVVRF V+  ++ E       ++  L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

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BLAST of CmoCh17G001770 vs. Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 50/131 (38.17%), Postives = 79/131 (60.31%), Query Frame = 1


Query: 47  GYFLAVTTLENIGEGKVRQ-TGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCG 106
           G+ +AVT +ENIG+G +R  TG V FPV +  + F+ ++GEILE VV  V K G F   G
Sbjct: 43  GFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102

Query: 107 PVENIYLSYLKMPDYRYVPGENPLF-MNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALV 166
           PV+    ++L   D  +  G+ P +  +D   KI+KD  VR  +IGT+ ++A   F  + 
Sbjct: 103 PVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIG 162

Query: 167 SLEGDYLGPVS 176
           +++ D+LG ++
Sbjct: 163 TIKDDFLGVIN 171

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BLAST of CmoCh17G001770 vs. Swiss-Prot
Match: NRPB7_ARATH (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-14
Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 1


Query: 21  KGLMLQRSIIIRLLDEFATKKATKDL--------GYFLAVTTLENIGEGKVRQ-TGDVLF 80
           + + L      R L E    K  KD+        G+ +A+T ++ IG+G +R  TG V F
Sbjct: 9   RNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTF 68

Query: 81  PVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPLF- 140
           PV +  + F+ ++GEILE VV  V K G F   GPV+     +L   D  +  G+ P + 
Sbjct: 69  PVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYT 128

Query: 141 MNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
            +D   KI+K+  VR  +IGT+ ++A   F  + +++ D+LG ++
Sbjct: 129 TSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171

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BLAST of CmoCh17G001770 vs. TrEMBL
Match: A0A0A0LKQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193330 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 5.3e-94
Identity = 172/175 (98.29%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 61  GKVRQTGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120
           GKVRQTGDVLFPV+FSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY
Sbjct: 61  GKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120

Query: 121 RYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           RYVPGENP+F+NDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175

[Close]

BLAST of CmoCh17G001770 vs. TrEMBL
Match: B9HKE3_POPTR (RNA polymerase Rpb7 N-terminal domain-containing family protein OS=Populus trichocarpa GN=POPTR_0008s16160g PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.5e-85
Identity = 154/176 (87.50%), Postives = 170/176 (96.59%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIPAENLDAKGLMLQRSI++RLLD+FA K ATKDLGY+LAV+TLE+IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGE 60

Query: 61  GKVRQ-TGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GKVRQ TGDVLFPVVFSGITFK++RGEIL+G+VHKVLKHGV LRCGP+ENIYLS +KMPD
Sbjct: 61  GKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPD 120

Query: 121 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           YRYVPGENP+F+NDK SKIEKDVVVRF+V+GTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176

[Close]

BLAST of CmoCh17G001770 vs. TrEMBL
Match: B9S9D8_RICCO (DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative OS=Ricinus communis GN=RCOM_0884250 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.7e-84
Identity = 155/176 (88.07%), Postives = 171/176 (97.16%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           M+LKVQLPWNVII AE+LDAKGLMLQRSIIIRLL++FA+KKATKDLGY+LAVTTLE+IGE
Sbjct: 1   MYLKVQLPWNVIISAEHLDAKGLMLQRSIIIRLLEDFASKKATKDLGYYLAVTTLESIGE 60

Query: 61  GKVRQ-TGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GKVR+ TGDVLFPVVF+GITFK++RGEILEGVVHKVLKHGVF+RCGP+ENIYLS +KMPD
Sbjct: 61  GKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKMPD 120

Query: 121 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           Y YVPGENP+F+NDK SKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 YHYVPGENPVFLNDKTSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176

[Close]

BLAST of CmoCh17G001770 vs. TrEMBL
Match: A0A061FY25_THECC (RNA polymerase Rpb7-like, N-terminal domain OS=Theobroma cacao GN=TCM_044847 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.2e-83
Identity = 152/176 (86.36%), Postives = 169/176 (96.02%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIPA++L AKGLMLQ++I++RLLD+FA KKATKDLGYF+AVTTLE+IG+
Sbjct: 1   MFLKVQLPWNVIIPADSLGAKGLMLQKAIVVRLLDDFACKKATKDLGYFIAVTTLESIGD 60

Query: 61  GKVR-QTGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GKVR  TGDVLFPVVFSGITFK++RGEILEGVVHK+LKHGVFLRCGPV+NIYLS+LKMPD
Sbjct: 61  GKVRQNTGDVLFPVVFSGITFKMFRGEILEGVVHKILKHGVFLRCGPVQNIYLSHLKMPD 120

Query: 121 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           Y YVPGEN +FMN+K SKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 YHYVPGENAIFMNEKHSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176

[Close]

BLAST of CmoCh17G001770 vs. TrEMBL
Match: A0A067KVA5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10526 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.2e-83
Identity = 152/176 (86.36%), Postives = 169/176 (96.02%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MF+KVQLPWNVIIPAENLDAKGLMLQRSIIIRLL++FA KKATKDLGY+LAVTTLE IGE
Sbjct: 1   MFIKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLEDFAIKKATKDLGYYLAVTTLEKIGE 60

Query: 61  GKVRQ-TGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GKVRQ +GDVLFPVVF+GITFK++RGEILEGVVHKVLKHGVFLRCGP+E+IYLS +KMPD
Sbjct: 61  GKVRQHSGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFLRCGPIEHIYLSCMKMPD 120

Query: 121 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           Y YVPGENP+F+N+K SKIEK+ VVRFIV+GTKWLEAEREF+ALVSLEGDYLGPVS
Sbjct: 121 YHYVPGENPVFLNEKTSKIEKETVVRFIVLGTKWLEAEREFRALVSLEGDYLGPVS 176

[Close]

BLAST of CmoCh17G001770 vs. TAIR10
Match: AT4G14660.1 (AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 288.5 bits (737), Expect = 2.8e-78
Identity = 128/176 (72.73%), Postives = 162/176 (92.05%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNV+IPAEN+DAKGLML+R+I++ LL+ FA+KKATK+LGY++AVTTL+ IGE
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GKVRQ-TGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GK+R+ TG+VLFPV+FSG+TFK+++GEI+ GVVHKVLKHGVF+RCGP+EN+YLSY KMPD
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           Y+Y+PGENP+FMN+K S+I+ +  VR +VIG KW+E EREFQAL SLEGDYLGP+S
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLS 176

[Close]

BLAST of CmoCh17G001770 vs. TAIR10
Match: AT3G22900.1 (AT3G22900.1 RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60
Identity = 107/174 (61.49%), Postives = 142/174 (81.61%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MF+KV+LPW+V IPAE++D  GLMLQR+I+IRLL+ F+ +KATKDLGY +  T LENIGE
Sbjct: 1   MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 61  GKVR-QTGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GK++ QTG++ FPVVF+GI FK+++GEI+ GVVHKV K GVFL+ GP E IYLS++KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 121 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGP 174
           Y ++PGENP FMN  +S+I+    VRF+V+ T+W EAE++F AL S++GD LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173

[Close]

BLAST of CmoCh17G001770 vs. TAIR10
Match: AT4G14520.1 (AT4G14520.1 DNA-directed RNA polymerase II-related)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-25
Identity = 74/193 (38.34%), Postives = 107/193 (55.44%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MF +V++  +V I A++L+  G    + I+ RLL +   +KA ++ G++L +T L++IG 
Sbjct: 1   MFSEVEMARDVAICAKHLN--GQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 61  GKVR--------QTGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYL 120
            K          Q   + FPV F+  TF   RG+IL+G V KVL +G F+R GP+   YL
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 121 SYLKMPDYRYV-----PGENPLFMNDKLSKIEKDVVVRFIVIGTKWLE----AEREFQAL 176
           S LKMP Y YV       E P F  D LSKI   VVVRF V+  ++ E       ++  L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

[Close]

BLAST of CmoCh17G001770 vs. TAIR10
Match: AT5G59180.1 (AT5G59180.1 DNA-directed RNA polymerase II)

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-15
Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 1


Query: 21  KGLMLQRSIIIRLLDEFATKKATKDL--------GYFLAVTTLENIGEGKVRQ-TGDVLF 80
           + + L      R L E    K  KD+        G+ +A+T ++ IG+G +R  TG V F
Sbjct: 9   RNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTF 68

Query: 81  PVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPLF- 140
           PV +  + F+ ++GEILE VV  V K G F   GPV+     +L   D  +  G+ P + 
Sbjct: 69  PVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYT 128

Query: 141 MNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
            +D   KI+K+  VR  +IGT+ ++A   F  + +++ D+LG ++
Sbjct: 129 TSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171

[Close]

BLAST of CmoCh17G001770 vs. NCBI nr
Match: gi|449465372|ref|XP_004150402.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7 [Cucumis sativus])

HSP 1 Score: 351.7 bits (901), Expect = 7.5e-94
Identity = 172/175 (98.29%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 61  GKVRQTGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120
           GKVRQTGDVLFPV+FSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY
Sbjct: 61  GKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120

Query: 121 RYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           RYVPGENP+F+NDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175

[Close]

BLAST of CmoCh17G001770 vs. NCBI nr
Match: gi|659130473|ref|XP_008465191.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7 [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 1.7e-93
Identity = 172/175 (98.29%), Postives = 174/175 (99.43%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 61  GKVRQTGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120
           GKVRQTGDVLFPV FSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY
Sbjct: 61  GKVRQTGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120

Query: 121 RYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           RYVPGENP+F+NDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175

[Close]

BLAST of CmoCh17G001770 vs. NCBI nr
Match: gi|743856292|ref|XP_011029874.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica])

HSP 1 Score: 323.6 bits (828), Expect = 2.2e-85
Identity = 154/176 (87.50%), Postives = 171/176 (97.16%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIPAENLDAKGLMLQRSI++RLLD+FA K+ATKDLGY+LAV+TLE+IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKRATKDLGYYLAVSTLESIGE 60

Query: 61  GKVRQ-TGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GKVRQ TGDVLFPVVFSGITFK++RGEIL+G+VHKVLKHGV LRCGP+ENIYLS +KMPD
Sbjct: 61  GKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPD 120

Query: 121 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           YRYVPGENP+F+NDK SKIEKDVVVRF+V+GTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176

[Close]

BLAST of CmoCh17G001770 vs. NCBI nr
Match: gi|224102153|ref|XP_002312568.1| (RNA polymerase Rpb7 N-terminal domain-containing family protein [Populus trichocarpa])

HSP 1 Score: 322.0 bits (824), Expect = 6.4e-85
Identity = 154/176 (87.50%), Postives = 170/176 (96.59%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIPAENLDAKGLMLQRSI++RLLD+FA K ATKDLGY+LAV+TLE+IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGE 60

Query: 61  GKVRQ-TGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GKVRQ TGDVLFPVVFSGITFK++RGEIL+G+VHKVLKHGV LRCGP+ENIYLS +KMPD
Sbjct: 61  GKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPD 120

Query: 121 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           YRYVPGENP+F+NDK SKIEKDVVVRF+V+GTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176

[Close]

BLAST of CmoCh17G001770 vs. NCBI nr
Match: gi|1009140752|ref|XP_015887822.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Ziziphus jujuba])

HSP 1 Score: 322.0 bits (824), Expect = 6.4e-85
Identity = 154/176 (87.50%), Postives = 170/176 (96.59%), Query Frame = 1


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNV+IPAENLDAKGLMLQ++I+IRL+DEFATKKATKDLGYFLAVTTL+ +GE
Sbjct: 1   MFLKVQLPWNVVIPAENLDAKGLMLQKAIVIRLMDEFATKKATKDLGYFLAVTTLDKVGE 60

Query: 61  GKVRQ-TGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GKVRQ TGDV+FPVVFSGITFKLYRGEILEGVVHKVLKHGV LRCGPVENIYLS LKMPD
Sbjct: 61  GKVRQNTGDVMFPVVFSGITFKLYRGEILEGVVHKVLKHGVLLRCGPVENIYLSSLKMPD 120

Query: 121 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           Y+++PGENP F+NDK SKIEKDVVVRFIVIGTKWLEA+REFQALVSL+GDYLGP++
Sbjct: 121 YQHMPGENPFFLNDKSSKIEKDVVVRFIVIGTKWLEADREFQALVSLDGDYLGPIA 176

The following BLAST results are available for this feature:

BLAST of CmoCh17G001770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPE7_ARATH	4.9e-77	72.73	DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana GN=NRPE7 PE=1 SV...	[more]
NRPD7_ARATH	3.5e-59	61.49	DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana GN=NRPD7 PE=1 S...	[more]
RPB7L_ARATH	2.8e-24	38.34	DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana GN=NR...	[more]
RPB7_SOYBN	1.4e-15	38.17	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1	[more]
NRPB7_ARATH	7.7e-14	32.12	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 S...	[more]

BLAST of CmoCh17G001770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKQ1_CUCSA	5.3e-94	98.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193330 PE=4 SV=1	[more]
B9HKE3_POPTR	4.5e-85	87.50	RNA polymerase Rpb7 N-terminal domain-containing family protein OS=Populus trich...	[more]
B9S9D8_RICCO	1.7e-84	88.07	DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative OS=Ricinus commu...	[more]
A0A061FY25_THECC	3.2e-83	86.36	RNA polymerase Rpb7-like, N-terminal domain OS=Theobroma cacao GN=TCM_044847 PE=...	[more]
A0A067KVA5_JATCU	3.2e-83	86.36	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10526 PE=4 SV=1	[more]

BLAST of CmoCh17G001770 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14660.1	2.8e-78	72.73	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT3G22900.1	2.0e-60	61.49	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT4G14520.1	1.6e-25	38.34	DNA-directed RNA polymerase II-related	[more]
AT5G59180.1	4.3e-15	32.12	DNA-directed RNA polymerase II	[more]

BLAST of CmoCh17G001770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465372\|ref\|XP_004150402.1\|	7.5e-94	98.29	PREDICTED: DNA-directed RNA polymerase V subunit 7 [Cucumis sativus]	[more]
gi\|659130473\|ref\|XP_008465191.1\|	1.7e-93	98.29	PREDICTED: DNA-directed RNA polymerase V subunit 7 [Cucumis melo]	[more]
gi\|743856292\|ref\|XP_011029874.1\|	2.2e-85	87.50	PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]	[more]
gi\|224102153\|ref\|XP_002312568.1\|	6.4e-85	87.50	RNA polymerase Rpb7 N-terminal domain-containing family protein [Populus trichoc...	[more]
gi\|1009140752\|ref\|XP_015887822.1\|	6.4e-85	87.50	PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005576	RNA_pol_Rpb7_N
IPR012340	NA-bd_OB-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G001770.1	CmoCh17G001770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005576	RNA polymerase Rpb7, N-terminal	GENE3D	G3DSA:3.30.1490.120		coord: 1..81 score: 4.7
IPR005576	RNA polymerase Rpb7, N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 25..80 score: 7.
IPR005576	RNA polymerase Rpb7, N-terminal	unknown	SSF88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..80 score: 1.44
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 86..174 score: 1.4
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 84..173 score: 9.8
None	No IPR available	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 2..175 score: 4.5E
None	No IPR available	PANTHER	PTHR12709:SF3	DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 7-RELATED	coord: 2..175 score: 4.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G001770	Cucsa.383860	Cucumber (Gy14) v1	cgycmoB1055
CmoCh17G001770	Cucsa.254900	Cucumber (Gy14) v1	cgycmoB0707
CmoCh17G001770	CmaCh14G017770	Cucurbita maxima (Rimu)	cmacmoB251
CmoCh17G001770	CmaCh17G001800	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G001770	CmaCh06G013410	Cucurbita maxima (Rimu)	cmacmoB809
CmoCh17G001770	Cla021567	Watermelon (97103) v1	cmowmB340
CmoCh17G001770	Cla007558	Watermelon (97103) v1	cmowmB353
CmoCh17G001770	Csa2G193330	Cucumber (Chinese Long) v2	cmocuB339
CmoCh17G001770	Csa3G143540	Cucumber (Chinese Long) v2	cmocuB347
CmoCh17G001770	MELO3C026776	Melon (DHL92) v3.5.1	cmomeB331
CmoCh17G001770	MELO3C006473	Melon (DHL92) v3.5.1	cmomeB335
CmoCh17G001770	ClCG05G004640	Watermelon (Charleston Gray)	cmowcgB315
CmoCh17G001770	CSPI03G12500	Wild cucumber (PI 183967)	cmocpiB352
CmoCh17G001770	CSPI02G10660	Wild cucumber (PI 183967)	cmocpiB346
CmoCh17G001770	Lsi09G012640	Bottle gourd (USVL1VR-Ls)	cmolsiB320
CmoCh17G001770	Lsi05G016680	Bottle gourd (USVL1VR-Ls)	cmolsiB345
CmoCh17G001770	Cp4.1LG12g01550	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G001770	Cp4.1LG03g10250	Cucurbita pepo (Zucchini)	cmocpeB364
CmoCh17G001770	Cp4.1LG08g03740	Cucurbita pepo (Zucchini)	cmocpeB373
CmoCh17G001770	MELO3C026776.2	Melon (DHL92) v3.6.1	cmomedB381
CmoCh17G001770	MELO3C006473.2	Melon (DHL92) v3.6.1	cmomedB385
CmoCh17G001770	CsaV3_2G013070	Cucumber (Chinese Long) v3	cmocucB0413
CmoCh17G001770	CsaV3_3G012620	Cucumber (Chinese Long) v3	cmocucB0420
CmoCh17G001770	Cla97C06G116290	Watermelon (97103) v2	cmowmbB361
CmoCh17G001770	Cla97C05G085670	Watermelon (97103) v2	cmowmbB350
CmoCh17G001770	Bhi12G001476	Wax gourd	cmowgoB0453
CmoCh17G001770	CsGy3G012640	Cucumber (Gy14) v2	cgybcmoB317
CmoCh17G001770	Carg06194	Silver-seed gourd	carcmoB1285
CmoCh17G001770	Carg16589	Silver-seed gourd	carcmoB0329
CmoCh17G001770	Carg10069	Silver-seed gourd	carcmoB0320

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh17G001770	CmoCh14G018140	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh17G001770	CmoCh06G013530	Cucurbita moschata (Rifu)	cmocmoB308

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G001770	Cucumber (Gy14) v2	cgybcmoB186
CmoCh17G001770	Silver-seed gourd	carcmoB1052
CmoCh17G001770	Silver-seed gourd	carcmoB1448
CmoCh17G001770	Cucumber (Chinese Long) v3	cmocucB0418
CmoCh17G001770	Cucumber (Chinese Long) v3	cmocucB0454
CmoCh17G001770	Watermelon (97103) v2	cmowmbB375
CmoCh17G001770	Cucurbita moschata (Rifu)	cmocmoB310
CmoCh17G001770	Cucurbita maxima (Rimu)	cmacmoB590
CmoCh17G001770	Cucurbita maxima (Rimu)	cmacmoB887
CmoCh17G001770	Watermelon (Charleston Gray)	cmowcgB325
CmoCh17G001770	Cucurbita pepo (Zucchini)	cmocpeB351