Cp4.1LG08g03740 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g03740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA-directed RNA polymerase II subunit RPB7
LocationCp4.1LG08 : 1970926 .. 1972747 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACGGTTCGTTTTGCGCGCCCAATTTCACTTTTCTAGTTCCTCGCAATTCTCGCCGCCGCTCCTCTGCGTCCGCGTCCGCCTCCGCCTCTGCCGCCCTCAGTTTTCTGTAACAGGTATCTCCTCATTACCTTCGCGCCTCTATAATCCGTGNCTCCGCCTCTGCCGCCCTCAGTTTTCTCTAACAGGTATCTCCTCATTACCTTCGCGCCTCTATAATCCGTGTGGAAGAATTTCGTTCGCATCGTATTTGATTTTTGAAAGTTTATGGATGTGTTTGAATTTCGAATTGGAGATCTGTAGCCGGTTCTGGCTCTCTGTAATTGAAGGATAATTGAGTTTATGTCCGTTTTGTACATCTGTTATTCGAGGCAGAGTCTGTGGTTTCTCATTTGCAGTTTGATTCTTGATTCGATCCTCTGTTTGGATGTTGAGGTTATTGGAATTAATCGGAGAGTGTGATCCATTGGCGATTGTGTTGCTTACTCGAATTAAAGTTCGTGTGGTCAATTAGTGAACAGAGAATCAGATTTCGGTAAGTAGTCATGAAATGATTGGACTGGATTTGGCATAACATTGAAAAGTATAAATCGCGGAGCATATTCTGGTGGATNATAAATCGCCGGGCATATTCGGGTGGATCCATTGCTTATTCGTCATTGTTCCACTTGGAATCCACAGAATCACCAAACACTATGGTATCTTTGTTATAAGTTTTTTTCTTAAGAGTCGAAGAGTATTTAATCGATGTGCGATCTTCCAATTTATAACATACATGGCGATCTCAAGCTTTTGAAACTGCTGTTTGAATCCTTCTAGGTGTTCTACTAATATACTCCACCTGTTTTCGGCTAGGTTTATTGTTTAATATTCTCAAGATGCAAGAACCTTTTAGTTTTCTAGTTCATGACATTGTTGACCTTTTATTTTATCTTCATTTCATAACGCTGATGTTAGAGACCAACATGAACACATAATTCATTCTTTGATTCATTTTATCTTTTCTCCTCCAAGTGATGGCTGGAGATATGGCTGAAAATCTCATATTCTGAAGCATTTTTCTCCAAGTGGATGAATTCAAGAAGTAGATTGGTGGCTCAGATGTTTGACATTTTCTTTTACGTTTGGTTCCTGATTAAATTCCTGAATGCCTACAAATTTCCAGTTTCTTACAAGAAGTAGATTGATAAATGTTTTTGATAATTGTATTGTTTTTCATGAATTATATCAGATTTGGGAAATGTTTTGTGAAGTGGAACTAGTGAGAGATGTGAAAGTGGTGGCTGAAAAGGCAGATAGAGATGGTCTCAACTTCCAGAGGTACATTATGGCACGTCTATTAGAGAACTTATTGAAGGAGAGGGCCAGCAAAGACCATGGCTATTTTATTGCTGTTACTAGCTTGAAGAGCATAGGCAAGGGACAGTGCAAGAATAAATCTCAGTATGTTACATTCCCCATTACCTTTGGCTGCCGAACCTTTGTGCCGTCAGGGGGAGAAATCTTGCTTGGAGTTGTTCGTCACGTATTTCGTCGCGGATTGCTCCTAAAATGTGGACCGATCAACTACGTGTTTCTTTCATCTCGTAAAATGCCAACCTACCATTATGTTGGTGGTAAGAATCCTGTGTTCTCAAGCAACGAATTCGCCACTATTCGAACCGAGAGCGCTGTACGGTTCAATGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGCATCAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAGCAACACACTTGGACCCATTTCTTTGTCGGAAGCCGATGAGTTAGGCTTGCAAACTTAG

mRNA sequence

ATGGCAACGTTCCTCGCAATTCTCGCCGCCGCTCCTCTGCGTCCGCGTCCGCCTCCGCCTCTGCCGCCCTCAGTTTTCTGTAACAGTTTGATTCTTGATTCGATCCTCTGTTTGGATGTTGAGATTTGGGAAATGTTTTGTGAAGTGGAACTAGTGAGAGATGTGAAAGTGGTGGCTGAAAAGGCAGATAGAGATGGTCTCAACTTCCAGAGGTACATTATGGCACGTCTATTAGAGAACTTATTGAAGGAGAGGGCCAGCAAAGACCATGGCTATTTTATTGCTGTTACTAGCTTGAAGAGCATAGGCAAGGGACAGTGCAAGAATAAATCTCAGTATGTTACATTCCCCATTACCTTTGGCTGCCGAACCTTTGTGCCGTCAGGGGGAGAAATCTTGCTTGGAGTTGTTCGTCACGTATTTCGTCGCGGATTGCTCCTAAAATGTGGACCGATCAACTACGTGTTTCTTTCATCTCGTAAAATGCCAACCTACCATTATGTTGGTGGTAAGAATCCTGTGTTCTCAAGCAACGAATTCGCCACTATTCGAACCGAGAGCGCTGTACGGTTCAATGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGCATCAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAGCAACACACTTGGACCCATTTCTTTGTCGGAAGCCGATGAGTTAGGCTTGCAAACTTAG

Coding sequence (CDS)

ATGGCAACGTTCCTCGCAATTCTCGCCGCCGCTCCTCTGCGTCCGCGTCCGCCTCCGCCTCTGCCGCCCTCAGTTTTCTGTAACAGTTTGATTCTTGATTCGATCCTCTGTTTGGATGTTGAGATTTGGGAAATGTTTTGTGAAGTGGAACTAGTGAGAGATGTGAAAGTGGTGGCTGAAAAGGCAGATAGAGATGGTCTCAACTTCCAGAGGTACATTATGGCACGTCTATTAGAGAACTTATTGAAGGAGAGGGCCAGCAAAGACCATGGCTATTTTATTGCTGTTACTAGCTTGAAGAGCATAGGCAAGGGACAGTGCAAGAATAAATCTCAGTATGTTACATTCCCCATTACCTTTGGCTGCCGAACCTTTGTGCCGTCAGGGGGAGAAATCTTGCTTGGAGTTGTTCGTCACGTATTTCGTCGCGGATTGCTCCTAAAATGTGGACCGATCAACTACGTGTTTCTTTCATCTCGTAAAATGCCAACCTACCATTATGTTGGTGGTAAGAATCCTGTGTTCTCAAGCAACGAATTCGCCACTATTCGAACCGAGAGCGCTGTACGGTTCAATGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGCATCAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAGCAACACACTTGGACCCATTTCTTTGTCGGAAGCCGATGAGTTAGGCTTGCAAACTTAG

Protein sequence

MATFLAILAAAPLRPRPPPPLPPSVFCNSLILDSILCLDVEIWEMFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGKGQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPTYHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPISLSEADELGLQT
Homology
[Close]
BLAST of Cp4.1LG08g03740 vs. Swiss-Prot
Match: NRPE7_ARATH (DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana GN=NRPE7 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-35
Identity = 76/181 (41.99%), Postives = 117/181 (64.64%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF +V+L  +V + AE  D  GL  +R I+  LLE    ++A+K+ GY++AVT+L  IG+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G+ +  +  V FP+ F   TF    GEI+ GVV  V + G+ ++CGPI  V+LS  KMP 
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 224
           Y Y+ G+NP+F + + + I+ E+ VR  V+G++W+E    +++EF  LASLEG + LGP+
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWME----VEREFQALASLEG-DYLGPL 176

Query: 225 S 226
           S
Sbjct: 181 S 176

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BLAST of Cp4.1LG08g03740 vs. Swiss-Prot
Match: RPB7L_ARATH (DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana GN=NRPB7L PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-35
Identity = 77/199 (38.69%), Postives = 125/199 (62.81%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF EVE+ RDV + A+  +  G +  + I+ RLL++L+ E+A ++HG+++ +T+LKSIG 
Sbjct: 1   MFSEVEMARDVAICAKHLN--GQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 105 GQCKN-------KSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFL 164
            +  N       +++ +TFP++F CRTF+P+ G+IL G V+ V   G  ++ GP+ Y +L
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 165 SSRKMPTYHYVGG-----KNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVML 224
           S  KMP YHYV       + P F  ++ + I     VRF VL VR+ E+    + ++ +L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

Query: 225 ASLEGSNTLGPISLSEADE 232
           A+LEG+ + GPISL+ +DE
Sbjct: 181 ATLEGNGSFGPISLTGSDE 197

[Close]
BLAST of Cp4.1LG08g03740 vs. Swiss-Prot
Match: NRPD7_ARATH (DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana GN=NRPD7 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-30
Identity = 76/179 (42.46%), Postives = 107/179 (59.78%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF +V+L  DV + AE  D  GL  QR I+ RLLE   KE+A+KD GY I  T L++IG+
Sbjct: 1   MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G+ K ++  + FP+ F    F    GEI+ GVV  V + G+ LK GP   ++LS  KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGP 224
           Y ++ G+NP F +   + I+  + VRF VL   W E     +K+F+ LAS++G N LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWRE----AEKDFMALASIDGDN-LGP 173

[Close]
BLAST of Cp4.1LG08g03740 vs. Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-13
Identity = 43/134 (32.09%), Postives = 76/134 (56.72%), Query Frame = 1 

Query: 69  FQRYIMARLLENLLKE---RASKDHGYFIAVTSLKSIGKGQCKNKSQYVTFPITFGCRTF 128
           F R +   L+  L+K+     S  HG+ +AVT +++IGKG  ++ + +VTFP+ + C  F
Sbjct: 18  FGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVF 77

Query: 129 VPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMP-TYHYVGGKNPVFSSNEFAT-I 188
            P  GEIL  VV  V + G   + GP+  +F+S+  +P    +  G  P +++++ +  I
Sbjct: 78  RPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 137

Query: 189 RTESAVRFNVLGVR 198
           + +S VR  ++G R
Sbjct: 138 QKDSEVRLKIIGTR 150

[Close]
BLAST of Cp4.1LG08g03740 vs. Swiss-Prot
Match: NRPB7_ARATH (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.8e-13
Identity = 40/134 (29.85%), Postives = 77/134 (57.46%), Query Frame = 1 

Query: 66  GLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGKGQCKNKSQYVTFPITFGCRTF 125
           G N +  ++++L++++ +   S  HG+ +A+T + +IGKG  ++ + +VTFP+ + C  F
Sbjct: 19  GRNLKENLVSKLMKDV-EGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVF 78

Query: 126 VPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMP-TYHYVGGKNPVFSSNEFAT-I 185
            P  GEIL  VV  V + G   + GP+  +F+S   +P    +  G  P +++++ +  I
Sbjct: 79  RPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEFQAGDMPNYTTSDGSVKI 138

Query: 186 RTESAVRFNVLGVR 198
           + E  VR  ++G R
Sbjct: 139 QKECEVRLKIIGTR 150

[Close]
BLAST of Cp4.1LG08g03740 vs. TrEMBL
Match: A0A0A0L5A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G143540 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 3.5e-77
Identity = 144/190 (75.79%), Postives = 165/190 (86.84%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF EVELVRDV++  EK  RD  NFQRYI+  LLENLLKE+A+KDHGYF++VTSL+SIGK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLRSIGK 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G  KN+SQ V+FPITF CRTF+P  GEIL GVVRH+F+RGLLLKCGPI YVFLS+RKMPT
Sbjct: 61  GIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYVFLSARKMPT 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 224
           Y YVGG+NPVFSS EFATI  +  VRF+VLGVRWIEKRGCIKKEFVMLASLEG+N+LGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 225 SLSEADELGL 235
           SLS++DE  L
Sbjct: 181 SLSDSDEFDL 190

[Close]
BLAST of Cp4.1LG08g03740 vs. TrEMBL
Match: B9HUM8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s08780g PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.0e-52
Identity = 108/190 (56.84%), Postives = 139/190 (73.16%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF EVE+   V+++AE  DR+GL  QR I+  LL++LL  +ASKDHGYF+AVT+LKSIGK
Sbjct: 1   MFGEVEVCSTVRIIAENLDRNGLVPQRSIVTHLLKDLLSMKASKDHGYFLAVTNLKSIGK 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G+  NKS  V F + F CRTF+P  GEIL GVV   FR G+LL+CGP+ Y+FLS+RKMP 
Sbjct: 61  GEVVNKSGDVLFHVEFKCRTFMPMKGEILQGVVHRTFRHGVLLRCGPVKYIFLSARKMPN 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 224
           Y Y   +NPVF ++E A I     VRF+VL VRWIEK   ++++F+MLASL G ++LGPI
Sbjct: 121 YQYTSEENPVFLNDELARIENNVLVRFSVLDVRWIEKMWDMRRDFMMLASLVG-DSLGPI 180

Query: 225 SLSEADELGL 235
           SL  +DEL L
Sbjct: 181 SLCGSDELDL 189

[Close]
BLAST of Cp4.1LG08g03740 vs. TrEMBL
Match: W9QJA8_9ROSA (DNA-directed RNA polymerase II subunit OS=Morus notabilis GN=L484_022309 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.1e-49
Identity = 111/203 (54.68%), Postives = 137/203 (67.49%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGL--NFQRYIMARLLENLLKERASKDHGYFIAVTSLKSI 104
           MF EVEL+RDV V AE    DGL    Q +IM RLLE+L++E+ASKDHGYF+AVTSLK I
Sbjct: 1   MFSEVELIRDVTVDAENIKSDGLVSRPQSFIMTRLLEDLVREKASKDHGYFLAVTSLKKI 60

Query: 105 GKGQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKM 164
           GK +   +S  V FP+ F CRTF+P  GEIL G+V  ++R G+ L+CGPI Y +LS+RKM
Sbjct: 61  GKMKAVEESGDVFFPVVFNCRTFLPYEGEILQGIVHCIYRHGVFLRCGPIKYAYLSARKM 120

Query: 165 PTYHYVGG-----------KNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVM 224
           P Y YV G           + P+F SNEFA I     V F VLGVRW E  G +K EF +
Sbjct: 121 PGYQYVYGQKMACQKCGHDRKPLFVSNEFAKIENGVVVCFMVLGVRWFENWGNVKNEFGV 180

Query: 225 LASLEGSNTLGPISLSEADELGL 235
           LA+LEG ++LGPISLS + EL L
Sbjct: 181 LATLEG-DSLGPISLSGSGELDL 202

[Close]
BLAST of Cp4.1LG08g03740 vs. TrEMBL
Match: M5XZJ6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012042mg PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47
Identity = 100/181 (55.25%), Postives = 129/181 (71.27%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF EVEL+R+V V+AE  DRD L   R+I+ RLLE LL E+A +D GYF+AVT +K IGK
Sbjct: 1   MFYEVELLREVAVLAENLDRDKLVSSRFIVTRLLEGLLSEKADEDLGYFLAVTGIKRIGK 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G+  + S  V FP+ F CR F+P  GEIL GVV HV R G+ L+CGP+ YVFLS+RKMP 
Sbjct: 61  GEVVHNSGDVFFPVVFNCRMFLPRKGEILEGVVDHVHRLGVFLRCGPVKYVFLSARKMPN 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 224
           Y YV G+ PVF  ++ A I  +  VRF V GVRW+ +R  I KEF+MLA+L+G + LGP+
Sbjct: 121 YRYVVGEKPVFLHDDLARIEKDVVVRFEVFGVRWM-RREDITKEFMMLATLQG-DLLGPV 179

Query: 225 S 226
           +
Sbjct: 181 T 179

[Close]
BLAST of Cp4.1LG08g03740 vs. TrEMBL
Match: A0A061ELG4_THECC (DNA-directed RNA polymerase II subunit RPB7, putative isoform 1 OS=Theobroma cacao GN=TCM_020785 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.2e-46
Identity = 101/193 (52.33%), Postives = 131/193 (67.88%), Query Frame = 1 

Query: 42  IWEMFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKS 101
           I +MF EVEL RDVKV A   D+ GL  QR I+  LLE+L KERAS+DHGYF++VTSLKS
Sbjct: 3   IQDMFSEVELQRDVKVHAGNLDKRGLVSQRSILVLLLEDLFKERASEDHGYFLSVTSLKS 62

Query: 102 IGKGQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRK 161
           IGKG   ++S  + F + F CRTF P  GE+L GVV H+  RG+ L+CGP+   +LS+ K
Sbjct: 63  IGKGDVVDESGNMVFTVVFTCRTFKPFKGEVLQGVVHHICHRGVFLRCGPVRIAYLSAWK 122

Query: 162 MPTYHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTL 221
           MP YHYV G  PVF S++ + I  +  V F VL VRWI       ++F +LASL  +++L
Sbjct: 123 MPNYHYVPGAKPVFISDDLSKIEKDVVVCFLVLAVRWIS----ASRDFELLASL-NADSL 182

Query: 222 GPISLSEADELGL 235
           GPISL  +DE+ L
Sbjct: 183 GPISLPWSDEVDL 190

[Close]
BLAST of Cp4.1LG08g03740 vs. TAIR10
Match: AT4G14660.1 (AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 151.4 bits (381), Expect = 7.1e-37
Identity = 76/181 (41.99%), Postives = 117/181 (64.64%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF +V+L  +V + AE  D  GL  +R I+  LLE    ++A+K+ GY++AVT+L  IG+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G+ +  +  V FP+ F   TF    GEI+ GVV  V + G+ ++CGPI  V+LS  KMP 
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 224
           Y Y+ G+NP+F + + + I+ E+ VR  V+G++W+E    +++EF  LASLEG + LGP+
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWME----VEREFQALASLEG-DYLGPL 176

Query: 225 S 226
           S
Sbjct: 181 S 176

[Close]
BLAST of Cp4.1LG08g03740 vs. TAIR10
Match: AT4G14520.1 (AT4G14520.1 DNA-directed RNA polymerase II-related)

HSP 1 Score: 151.0 bits (380), Expect = 9.3e-37
Identity = 77/199 (38.69%), Postives = 125/199 (62.81%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF EVE+ RDV + A+  +  G +  + I+ RLL++L+ E+A ++HG+++ +T+LKSIG 
Sbjct: 1   MFSEVEMARDVAICAKHLN--GQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 105 GQCKN-------KSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFL 164
            +  N       +++ +TFP++F CRTF+P+ G+IL G V+ V   G  ++ GP+ Y +L
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 165 SSRKMPTYHYVGG-----KNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVML 224
           S  KMP YHYV       + P F  ++ + I     VRF VL VR+ E+    + ++ +L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

Query: 225 ASLEGSNTLGPISLSEADE 232
           A+LEG+ + GPISL+ +DE
Sbjct: 181 ATLEGNGSFGPISLTGSDE 197

[Close]
BLAST of Cp4.1LG08g03740 vs. TAIR10
Match: AT3G22900.1 (AT3G22900.1 RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-31
Identity = 76/179 (42.46%), Postives = 107/179 (59.78%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF +V+L  DV + AE  D  GL  QR I+ RLLE   KE+A+KD GY I  T L++IG+
Sbjct: 1   MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G+ K ++  + FP+ F    F    GEI+ GVV  V + G+ LK GP   ++LS  KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGP 224
           Y ++ G+NP F +   + I+  + VRF VL   W E     +K+F+ LAS++G N LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWRE----AEKDFMALASIDGDN-LGP 173

[Close]
BLAST of Cp4.1LG08g03740 vs. TAIR10
Match: AT5G59180.1 (AT5G59180.1 DNA-directed RNA polymerase II)

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-14
Identity = 40/134 (29.85%), Postives = 77/134 (57.46%), Query Frame = 1 

Query: 66  GLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGKGQCKNKSQYVTFPITFGCRTF 125
           G N +  ++++L++++ +   S  HG+ +A+T + +IGKG  ++ + +VTFP+ + C  F
Sbjct: 19  GRNLKENLVSKLMKDV-EGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVF 78

Query: 126 VPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMP-TYHYVGGKNPVFSSNEFAT-I 185
            P  GEIL  VV  V + G   + GP+  +F+S   +P    +  G  P +++++ +  I
Sbjct: 79  RPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEFQAGDMPNYTTSDGSVKI 138

Query: 186 RTESAVRFNVLGVR 198
           + E  VR  ++G R
Sbjct: 139 QKECEVRLKIIGTR 150

[Close]
BLAST of Cp4.1LG08g03740 vs. NCBI nr
Match: gi|449432628|ref|XP_004134101.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 5.1e-77
Identity = 144/190 (75.79%), Postives = 165/190 (86.84%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF EVELVRDV++  EK  RD  NFQRYI+  LLENLLKE+A+KDHGYF++VTSL+SIGK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLRSIGK 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G  KN+SQ V+FPITF CRTF+P  GEIL GVVRH+F+RGLLLKCGPI YVFLS+RKMPT
Sbjct: 61  GIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYVFLSARKMPT 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 224
           Y YVGG+NPVFSS EFATI  +  VRF+VLGVRWIEKRGCIKKEFVMLASLEG+N+LGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 225 SLSEADELGL 235
           SLS++DE  L
Sbjct: 181 SLSDSDEFDL 190

[Close]
BLAST of Cp4.1LG08g03740 vs. NCBI nr
Match: gi|659076260|ref|XP_008438585.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis melo])

HSP 1 Score: 296.2 bits (757), Expect = 5.1e-77
Identity = 144/190 (75.79%), Postives = 164/190 (86.32%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF EVELVRDV++  EK  RD  NFQRYI+  LLENLLKE+A+KDHGYF++VTSLKSIGK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLKSIGK 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G  KN+SQ V+FPITF CRTF+P  GEIL GVVRH+F+RGLLLKCGPI Y FLS+RKMPT
Sbjct: 61  GVVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYAFLSARKMPT 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 224
           Y YVGG+NPVFSS EFATI  +  VRF+VLGVRWIEKRGCIKKEFVMLASLEG+N+LGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 225 SLSEADELGL 235
           SLS++DE  L
Sbjct: 181 SLSDSDEFDL 190

[Close]
BLAST of Cp4.1LG08g03740 vs. NCBI nr
Match: gi|1009140762|ref|XP_015887827.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Ziziphus jujuba])

HSP 1 Score: 223.4 bits (568), Expect = 4.2e-55
Identity = 114/190 (60.00%), Postives = 140/190 (73.68%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           M+ EVELVRDV V+AE   +D    Q  I+ +LLENLL+E+A+KDHGYF++VTSLK IGK
Sbjct: 1   MYFEVELVRDVAVLAENFKKDVPISQGSIITQLLENLLQEKATKDHGYFLSVTSLKRIGK 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G+   +S  V FP+ F CRTF+P  GEIL GVV H  R G+ L+CGPI Y FLS+RKMP 
Sbjct: 61  GEVVEESGNVLFPVVFNCRTFLPIKGEILHGVVHHTLRLGVCLRCGPIKYAFLSARKMPR 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 224
           Y +V G+ PVF S+E   I     VRF VL +RWIEKRG  +KEFVMLASLEG ++LGPI
Sbjct: 121 YQFVSGEKPVFLSDELGKIEAGVVVRFVVLDLRWIEKRGRFRKEFVMLASLEG-DSLGPI 180

Query: 225 SLSEADELGL 235
           +LS +DELGL
Sbjct: 181 ALSGSDELGL 189

[Close]
BLAST of Cp4.1LG08g03740 vs. NCBI nr
Match: gi|694439039|ref|XP_009346431.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Pyrus x bretschneideri])

HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53
Identity = 109/190 (57.37%), Postives = 141/190 (74.21%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF EVEL+R+V V+ E  D+D L   R ++ RLLE+LL+E+A KD GYF+AVT LK IGK
Sbjct: 1   MFYEVELLREVAVLPENLDQDRLVSTRTVVTRLLEDLLREKADKDLGYFLAVTGLKRIGK 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G+  + S  V FP+ F CR F+P  GEIL GVV H++R G+ L+CGPINYVFLS+RKMP 
Sbjct: 61  GEVVDTSGDVFFPVVFNCRMFLPCKGEILEGVVHHIYRLGVFLRCGPINYVFLSARKMPN 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 224
           + YV G++PVF +++ A I  +  +RFNVLGVRWIE R  I+KEFVMLASLEG ++LGP+
Sbjct: 121 FRYVAGESPVFLNDDLAKIEKDVVLRFNVLGVRWIEIRDDIRKEFVMLASLEG-DSLGPL 180

Query: 225 SLSEADELGL 235
           +L   D L L
Sbjct: 181 TLPGPDGLDL 189

[Close]
BLAST of Cp4.1LG08g03740 vs. NCBI nr
Match: gi|658035538|ref|XP_008353299.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Malus domestica])

HSP 1 Score: 217.2 bits (552), Expect = 3.0e-53
Identity = 107/190 (56.32%), Postives = 140/190 (73.68%), Query Frame = 1 

Query: 45  MFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGK 104
           MF +VEL+R+V V+AE  DRD L   R ++ RLLE+LL+E+A KD GYF+AVT LK IGK
Sbjct: 1   MFYQVELLREVPVLAENLDRDRLVSTRSVVTRLLEDLLREKADKDLGYFLAVTGLKRIGK 60

Query: 105 GQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPT 164
           G+  + S  V FP+ F CR F+P  GEIL GVV H++R G+ L+CGP+ YVFLS+RKMP 
Sbjct: 61  GEVVDNSGDVFFPVVFNCRMFLPCKGEILEGVVHHIYRLGVFLRCGPVKYVFLSARKMPN 120

Query: 165 YHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPI 224
           + YV G+NPV+ +++ A I  +  +RF VLGVRWIE R  I+KEFVMLASLEG ++LGP+
Sbjct: 121 FRYVAGENPVYLNDDLAKIDNDVVIRFKVLGVRWIEIRDDIRKEFVMLASLEG-DSLGPL 180

Query: 225 SLSEADELGL 235
           +L   D L L
Sbjct: 181 TLPGPDGLDL 189

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g03740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NRPE7_ARATH1.3e-3541.99DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana GN=NRPE7 PE=1 SV... [more]
RPB7L_ARATH1.6e-3538.69DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana GN=NR... [more]
NRPD7_ARATH2.1e-3042.46DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana GN=NRPD7 PE=1 S... [more]
RPB7_SOYBN2.3e-1332.09DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1[more]
NRPB7_ARATH8.8e-1329.85DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 S... [more]
BLAST of Cp4.1LG08g03740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5A3_CUCSA3.5e-7775.79Uncharacterized protein OS=Cucumis sativus GN=Csa_3G143540 PE=4 SV=1[more]
B9HUM8_POPTR1.0e-5256.84Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s08780g PE=4 SV=1[more]
W9QJA8_9ROSA1.1e-4954.68DNA-directed RNA polymerase II subunit OS=Morus notabilis GN=L484_022309 PE=4 SV... [more]
M5XZJ6_PRUPE1.3e-4755.25Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012042mg PE=4 SV=1[more]
A0A061ELG4_THECC7.2e-4652.33DNA-directed RNA polymerase II subunit RPB7, putative isoform 1 OS=Theobroma cac... [more]
BLAST of Cp4.1LG08g03740 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14660.17.1e-3741.99 RNA polymerase Rpb7-like, N-terminal domain[more]
AT4G14520.19.3e-3738.69 DNA-directed RNA polymerase II-related[more]
AT3G22900.11.2e-3142.46 RNA polymerase Rpb7-like, N-terminal domain[more]
AT5G59180.15.0e-1429.85 DNA-directed RNA polymerase II[more]
BLAST of Cp4.1LG08g03740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432628|ref|XP_004134101.1|5.1e-7775.79PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis sativus][more]
gi|659076260|ref|XP_008438585.1|5.1e-7775.79PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis melo][more]
gi|1009140762|ref|XP_015887827.1|4.2e-5560.00PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Ziziphus jujuba][more]
gi|694439039|ref|XP_009346431.1|1.3e-5357.37PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Pyrus x bretschneideri][more]
gi|658035538|ref|XP_008353299.1|3.0e-5356.32PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR005576RNA_pol_Rpb7_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g03740.1Cp4.1LG08g03740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005576RNA polymerase Rpb7, N-terminalGENE3DG3DSA:3.30.1490.120coord: 45..127
score: 5.
IPR005576RNA polymerase Rpb7, N-terminalunknownSSF88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 45..125
score: 1.2
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 131..201
score: 4.1
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 46..225
score: 2.7
NoneNo IPR availablePANTHERPTHR12709:SF3DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 7-RELATEDcoord: 46..225
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g03740Cucsa.254900Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g03740Cucsa.383860Cucumber (Gy14) v1cgycpeB1012
Cp4.1LG08g03740CmaCh06G013410Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g03740CmaCh14G017770Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g03740CmaCh17G001800Cucurbita maxima (Rimu)cmacpeB411
Cp4.1LG08g03740CmoCh17G001770Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g03740CmoCh14G018140Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g03740CmoCh06G013530Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g03740Cla007558Watermelon (97103) v1cpewmB853
Cp4.1LG08g03740Cla021567Watermelon (97103) v1cpewmB845
Cp4.1LG08g03740Csa2G193330Cucumber (Chinese Long) v2cpecuB849
Cp4.1LG08g03740Csa3G143540Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g03740MELO3C006473Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g03740MELO3C026776Melon (DHL92) v3.5.1cpemeB804
Cp4.1LG08g03740ClCG05G004640Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g03740CSPI03G12500Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g03740CSPI02G10660Wild cucumber (PI 183967)cpecpiB851
Cp4.1LG08g03740Lsi05G016680Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g03740Lsi09G012640Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g03740MELO3C026776.2Melon (DHL92) v3.6.1cpemedB944
Cp4.1LG08g03740MELO3C006473.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g03740CsaV3_3G012620Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g03740CsaV3_2G013070Cucumber (Chinese Long) v3cpecucB1045
Cp4.1LG08g03740BhiUN393G10Wax gourdcpewgoB1121
Cp4.1LG08g03740Bhi12G001476Wax gourdcpewgoB1100
Cp4.1LG08g03740CsGy3G012640Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g03740Carg10069Silver-seed gourdcarcpeB0329
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g03740Cp4.1LG12g01550Cucurbita pepo (Zucchini)cpecpeB194
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g03740Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG08g03740Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g03740Cucurbita pepo (Zucchini)cpecpeB507
Cp4.1LG08g03740Cucurbita maxima (Rimu)cmacpeB019
Cp4.1LG08g03740Cucurbita maxima (Rimu)cmacpeB554
Cp4.1LG08g03740Cucurbita maxima (Rimu)cmacpeB650
Cp4.1LG08g03740Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g03740Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g03740Bottle gourd (USVL1VR-Ls)cpelsiB704
Cp4.1LG08g03740Bottle gourd (USVL1VR-Ls)cpelsiB716
Cp4.1LG08g03740Watermelon (Charleston Gray)cpewcgB762
Cp4.1LG08g03740Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g03740Watermelon (97103) v1cpewmB823
Cp4.1LG08g03740Watermelon (97103) v1cpewmB841
Cp4.1LG08g03740Cucumber (Gy14) v2cgybcpeB278
Cp4.1LG08g03740Silver-seed gourdcarcpeB0336
Cp4.1LG08g03740Silver-seed gourdcarcpeB1101
Cp4.1LG08g03740Silver-seed gourdcarcpeB1333