BhiUN393G10 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN393G10
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	DNA-directed RNA polymerase II subunit
Location	Contig393 : 166954 .. 176931 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCGATGCATTTCCCCAATCACAGCATCCCAACACTTCCTAATGCCCCCCATTTTCATTTCTCTAGTTCCTCGCAATTCTCGCCGCCGCCCCTCTCCTCCTCCTCCTCTGCCGCCGCCCTCCTTCATTTTTCCTACTCAGGTAACTCATTCCTCATTTTCTCTCTCCCCCCCCCCCCCCTCTAATCCGTGTTGCACACTGTGGTCCGCTTCATATTTTGAGTTTTTGACAGATTAGGGATGTTTTGAATTCGAGATCTGTAGCCGTTTCTGGTTCTCTGTAATTGTATGATGATTGAATTTCTATACGTTTTGTTCATCTGTCATTCGAGGCAGAATCTGTGATTTTTCCTCTGCAGTTTGATTATCGATTCGGTTTGGATGGTGAGGTCATTGGAATTAATTGGTGCTTGTAATCGTGTGGCGATTGTTGATACTTCCCTATTTGTGCTGCTTAGTCGAATTAAAGTTTTTGTGTGGTCAGTTTATGAACAGAGAAACAGATTTCTGTTAGTAGCCATGAAATAATTCGACTGGATTTGGCATAATCTTGATAAGTGTAAATCGCTGAGCACAACCGGCTGGGTCCTTTGTTTATTTCTCATTGCTACTTTAAGAATTTACGGAATCACCAACCTCTCTGCCGTCTTTGTTAGAATTTTCGTTTTCTTAAGACTTAAAAGTATTTAATCGATGTGCGATCTTCCAATTAATAACGTGGAATCCTTCTAGGTGCTGCTACCAATATACTCCACCCAAACATTTGAGTATCTTGTAGTTTTCTAGCTCAAGGATATTGCTGACCTTTTATTTTATGTTCTTTTCATAACGCTGATGTTATAGGCTAATATGAAGCAAATGTTTTCCTTCTTTGATTTGCTTTATCCTTGAGTGATTGTTGGAGTTATGCTCAAAATTTCATAGTCTGAAGCACTTTTCTCCAAGTGGATGAGTTTACACGGTTTAGTGGGATTGCATGAAAGCAAATTTCTTGTCTCAAATGTGTTCTTTGATAAATATACACATTTCTTATTTCTTATAAGATGTAGATTGGTAAATGTTGGTTTTCTTGAATTTGATCAGATTTGGGAAATGTTTTATGAAGTGGAACTAGTTAAAGATGTGGAAATCACAGCGGAAAAGGAAAAGAGAGATGCTCTCAACTTTCAGAGGTACATTATAACATGTCTATTAGAGAACTTATTGAAGGAGAAGGCCAACAAAGACCATGGCTATTTTCTTGCTGTTACTAGCTTGAAGAGCATAGGCAAGGGAGTGGTTAACAGTCAGTCTCAATGTGTTTCATTCCCCATTACCTTTAGTTGTCGTACCTTTTTGCCTTTCGAGGGGGAGATCTTGCATGGAGTTGTTCATCACATATTTCGGCGTGGCTTACTCTTAAAATGTGGACCGATCAAGTACGTGTTTCTTTCAGCTTGTAAAATGCCAACCTACCATTATGTTGGTGGTGAAAATCCTGTATTCTCAAGTAACGAATTTGCAACGATCGGAAACGATGTCGTTGTACGGTTCAGTGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGTATCAAAAAAGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAACAACTCACTTGGACCTATTTCATTGTCTGACTCCGATGAGTTTGACTTGTAAATTTAGAATACAAACGACAAACTTGGGAATGTTTCACTGTAATATATTCTTACACGGCTTGCTTATTTCTTCCCTTTTTTATCTCTCTGTTTGATGTTCCTTTTGGCCATGATAATTCAAGAGTATTGTGGAATGTTAATTTGAGTGTCTTTGCATTAAGGACATCCGAGGACAGGATGGATTAGATCTTAGTTGGAGAATGGATATTTGCAGAACAGTATTGTTACTAAAGGCTTGGTTTCTGAATTTGTATTCAAAATCTTAATAGAGTCGATGTTTGCAATGTTCTACTTCTAAAGTCAATCGTCTGAAGGACAAAACTGAGAGAGGGAGGTTGAAGATGCTGGCATATTTCCAACCAACCGTTCTACGGACAATCAATCAAGAGATTTCTATTTGGTTTGTTCTCTATTTATTTCACGAATAGCTTAGCGAGTTCATTACTTAGGTCCATTTACAATTATGATCTTATTCATTAAGGAAAAGAAAAAGAAAGAAAGATTAAATTCGAGAGTGGGAAAAAACCCTTTACACTTTCCAACACTCCACATTTTCCAAAATCTTTTTTACACGTTCCAACACACTTCATACTTTCAAAAATCCTTTTTACACTTTCCAAATATCTTTTCACTTTCCAAAACTATTCCCCCCCAAATATTTCTCATTTCTTCTTCAATCTCCAATTTCTATTCCTTCACAAACTATCTTCTAACTTCCATTTCCGTTCACCATCGTATGAATAGTTCTTTTTCTTCTTTTCGACAATGCAAACAAAGCTCAAGTCTTCAACCGTCAGATTTTCTTGTCACCACATGCAGTTGCGTTCCTGTGTTTCGTCTGCAGTAGGCATGTTGCCGCTCGTGTCTCCGATCGTCGGAAATCCTTTTCCACCATGTGCATCTGTTGATCAGATTTCACCGTGGATCTGCGTTCAAGCGTTTAATCTCTGTCGCGGATCTCTGTTCCAACTCCATTGATCGAGTTTTTTTTTTTAAAAAAAGGAGCAAGCCCAAGGATTGAGTAGAAGAATAATTTATTGATCGAGTTTTTAAAAAGGAGCAAGCCCTAGGATCGAGTAAAGAATAATTTGGGAATTTTCAGTATATTGAATGATGATGTACAAAGGGCTCCAAAGGACTCAATATATACAATTACAAAAGAATCTTTGTATAACGAACTCTACATGTGTTGCCATGTAATTGATAGGGAGAAAACAGAATGGAAAGGGACAGGTAGAGGAATTGTTTAATCCACATCTTTGCACACGTCGACGGTCAACTTGGCTGAGTCATGGTTGACTTTGTCATGTTTCTTATCATCACTCCTCAAATTGGGATTGAGATCAATTAATCCAAACGTGGATTTGAAGTAGGAAAACTAGAAGTGACTCAGAGGTTTGGTGAGGCAATTTGCTACTTGTTCATTGGAAGGAACGTATCGAATGTCTAATTGTCCTTTAAGAAATTGATCATGAACATAGTGAACATCTATCTCAATATGTTTGGTTCGAGAGTGGAACACAGGATTTGAAGCTAAGGCTCCGGCACCAATATTATCACACCAGAGGACGTGTGGTCCAGAAAGTTTGAAACCAAGTTCTTCGATAAACTGATGTATTCATGAGATTTCAACAGAGGCATGGGCAAAGGCACAATATTCAGATTCTGTGTTTGACCTGGCCACAACAACTTGTTTCTTAGAGGACCATGAAATCAAATAGGTTCCAAGGAAAACAGAGTAAGCAACAACAGATTTTCGATCATCAATGTTGGATGCCCAATTAGCATCAGAGAAGGCAATAGAGATAGAGAGTCACTTGGTTGGATTAAAATGCCAAGGATATATGAATGCCCAGAAAGTAGTTCAAAATGCTAAGGTCTTTTAAGGAAAATTTTTTATCAAGATTTTTTATAAGGTGAAAGATGAAATGAGGGTCATTACTAGTAATAATAACGTCATCAACATTAATGAGCAGAAGAATGATTGTGGAGTGACGTCAAAGAAAATAGAGGGAAGCATCGGACTTACTGACAGAGAATCCACAACTGGTGAGAAAAGTTTAACCCGTAGATTATTTTGTTAACTTTGCAGACACATGAGGGATAACGAGAATCATTGAATCTAGGGGGTTGAGTCATGTAGACAACCTCTTTCAAGGTCCCATTAAGAAAAACGTTGTTGAAGTCCAGTTGTTGGAGAGACCACCCATCAGAAATAGCCAGAAATAAGACGATATGGATTGTTGATGATTTCACAACTGGACTGAAAGTGTCGAAGACGTCAACCCCCAGTGTCTGATAAAATCCTTTTGCAACGAGTCTCGCTTTGTGTCTTTGGACAGAACCATCAACGTTTTGCTTTAGAAAAAAAATACATCGACATCCAACAACAATGTATTGAGGGCAGAGAGGCATGAGAGTCTAGGTATTTAGGCGACAGAGGGCAGAGTACTCAGATTCCATTACTGCTTTCCAATGAGGAGAGGAAAGAGCATCACTGACCTTTAGAGGTCCTGTAAAGTAGAGTATGTGATGGATGATGGATTAGCTTCTGGTGCGGTTAGCCAAGCTTTGGGACGAAAGATGTCAACCTTTGCCCTGGCGATCATGGGATGATTGTTGATGACAGTAGAAGGTTTTGGAAGAGGTAGAGAAAAGGAGGGTTGAGGAAGATTAGAGGTAAAGTGATGAGGATGTGAGCTAGGCTCGGTTGAATTATTGGTTGAATAGAGTGGAGAAGAATGCGTCAATATGTTGGGATGGGGCGGGGAATCTTGAGTAGTGGAGATGAGCCTGAAAGTACTTGGATTTGGATCGGTAGGGTGAGGATAACCCATGTGAGAAAGTGACAGTGGGCTGAATGTCGATGAGGGCTGTTGAGGGATATTTTAAGAGGAAGCTGAATCATTATGAACATGAATTGGGCTGGACTATGATAGTAGTGAAGGAGGAGGAAACCAGGAAGAAATAGATGGGTGAGGTTTGGGTGGTGCAGTAGTTGGTCTTGGGTTGCCAAAGTTGTGTTTGAAGGAAAAATTATCCTCGTTAAAAATAACATGCCTAGTGATGAAGATACGACCTGTCAAGGAGAGACATCGATGCCCTTTATGAATGGCAGAGGGACCAAGATAGACACAACGATCTGAGTGGAAATCAAATTTGTATCGTTGATATGGTCTCAAGTTTGGGTAGTAGGCACAACCGAAAGTACGAAAAGAGGATATGTCCAGTGGCTTGTTGATGAGAAGTTCAACTAGAGATCTGCCCTGCAAAATAGGAGAAGAAAGCTCATTGATCAGTAAAACTGCAGTTTGAAAAGCAAACCACCAATATTTAAGAAGAATCAAAGCTTGGGCTAATAGAGTGAGCTCAGTTTCCACGATATGCCAGTGTTTACGTTCGGCTCTTCTGTTTTGAGCTGATGTATACGAGCATGATAGTCTAGTAAGAATGCCAAAACTAGTGCAGACTTATAATGGGCTGATATTCACCTATGTTGTGTTTAATTGATTTTGAACCATAGACTTAGAAGCAATAAAGGCATGAACCATAGACTTATAATGGGCTGACTGCTCGAACAATCAATAATCACGAATGCTCGATCTATATGACCGCAACACTGCACGAACACTTCGCGCTCGTCCTCAACGATCTCCTCGGTCACGAACTCCTCCGCAACACGAACGAACACCGTGCTTGTCCATAGCGACACGAACGGCCTCCACAACACCATGAACGGCCTCCAAAAAACCTCGACGATATCGAGTTGAGTCTGACACCACCAACAAGGCGTCCTTGGTATTCTCGGTGTGAGAATCCAGAGGGTGGGCTCTGTTCGGACTTAGTATGAGGCAGACGAATGGAGGAAACAACGATCGCGTACACGATTGGGCTAGTGGGAGATGGCTGAGACCTATCGTATAGGTTGATACCCAATCGTTTAGATAAAGCTATGTGATCATCTAGCAAAAGTTATGCGATCGTTTAGCTCTATCGTTTGGCTTGGTCTGTCACATACAGACTCTACACGATCATTTATCTTGGGCCAGCGGTTGTCTAGCAAAGCTATGCGATCATTTAGTAGACACTACATGATCGTTTAGCTCGCACTTGCACGATTGTTTAGCTCGCTCAGTCGTCGTTTAGTAAATATGTATTTACTTGACGACTTACGTGAGTTTCTTTTCACGAAGAGAAAATTTAAAAATCCTTTTTTTAAAAACTTTTGTAAAACCTACTTTTCAAAATAGGAAACCACCTTCCTTTTAAACTCACGGTTACCATGATCCAATAACCACCCATTACTTTGATTATTTAAAAGAAAAAGTATTAATTATCCAATAATTAATATTATTATAAATATAAATGATAACCAGCTTATCATACTATATTTATAACCTATAGTTTTAATATTTCATCTCATGAAACATATAAACCATAGTTCTTTTTCTATTCGATGGTACTTAATGTAAATCTCATTTACATCAATCCTCCACTAGATGTATCTTATACATCATACCGATTATATCATATATAATCAAAAAACCTATTGTCAATTTGAACATTTCAAATCAACACCAAGAACTGATCCTCAACAGAAATCCAAGCTACTAAGGGGACCTTATGGACCTGTAGATCCGAAGCTCCAACGGTACGTGAATAACTGATTAAACTCTTTAGTCACGGGATCCACCATCCGTTAACTGCCAGACACTCCACTAAAGACCAACAGCTGAACTCTCCTCACTACAGATATATTATGTGTCCATCTTAACCAATCGGCAGTGTGTCAACCCTTCACAGCTGTATTCAAAGTGTTTGAGTCTAGCTCTTCGAGGAAGGAGACGATCAAGGGTTGATCGTATCGTGTAGAAGCGGTTATACGCGATCGTTGTCCATTGCATCGTGAATATGAAGGCGTAAGCAATCATGGTTGAACGCAGCAGTTGAACGATGGCATATACGATCAAACATTGGTCGTATCGAAAAGATAATCGGGCATGCGATCGTTGAGCATCGTTTAAAGCACGCGCAAGCTAGACGATAGTTTAGGTCAGCAAGCTTCATCACTTAGTAACTGACTAAACGATCGCTTAGCAACGCAAGATAAATCGTTTATCAAGTTGCACGCTAAGTTAAACGATCAGACGCTCGCGTATCGTTTAAGCGCGCTAGACAATCGTTTAGGTCGGCAAGCTTCATTGCTTAGTAACTGACTAAATGATCGCTTAGTAACTTAAGGTAAATTGTTTACCTATCGTTGCACTATATGATCGCATGGGCGATCAGGCTTCGCAGCCTTGTCGTCGTCTACGCGATCGTTTGCTAAAGTTCCTATCATATAGTGTGTGCTGAACGATTGTCTACCTAATAAATATTGCTACACGATGGAGACCTTCTAGCGGTTCAAGACTCGGTTCGCTTGTGAACCGGTTTGCTTGATGATAAATGTAATAGATTGGTTTATTCATTCCGATTCATTTCGATTTAAAGGCTCATCCCGGTCTATTAATCTATTTGTTTAATACATACAATGTATATGTCATATGATATGCACATATAGTAAATCCTACCTTAGGTTATGCATTGATCATGCATCATCTCTTTATTGTAATTGTTATAATTTAGAGAAGCATGATTTAATTATGTTAGATCATGCTCATGCATCATATAATATAAGAGTTATATTTATGCATGCATAAAAAGCTTAGACATGCATCATCTTTATATTATAATTGTTATAGTATAAGGGTGAATGATAGCATGTTTCCTAGATTATTACGAGTTATATAAAAGTTATATAGTAATGACTGGAAATTGTATGAAGCATGACACATAAGTTATTTTATAAATGTTATAAGCGCCTAATTGTGTGCAATTTTTTTTAGTTGTTTCTTTTTTAAAACGTTAAAGAGAAATTAGAACTAAAAGAAATAAGATAGACATGCATGCTAACTTAAGTTTAATTCATGTTTTAAAATGTTTAAAACTTGGATCACATAGACCTAAGATCACGGTTCTATTATGATTAGCAACCCTAAGACTTTAATCTTTTAATCAGTTTAATAGGATTAAATTGGCTAATAAAAGGTTAAAATGTAGAAAATCTATCTATAAGGGACCTTTTGTCTAAGGCGGGTTCTGTCTATGCTGGGGTATTTAAGTTGACGGAAACGTAATACCCCTACTTGGGAACTTACGTGGAAAGGTGAATTAGATAGATTTGATGCATGCATGCAAGTTAATGACAGTCCATTAAAGTGTTTAAATGTGACTACTTGAACTTGTTTATATTTCATAAATGAATGTTGTTTATGTGCGGACTTTAAAAAGACCATATTCAGTTGGAGGTACTTGAGGCATGAGATACTTCACTTAAACCTTTCACTATTCTCCTTAAGTCCACACCGTGAGATCTATCCTCGGCCTCGCGGCACCTTTGGTGTGTCCCCCCAATGGATGGAGTTTGGGTAGGTCAATATCAAGGTGGATGGAGAGAATGTTCATAGTAAGTGGGAGTGGGAAGTGCGATAGCATATCCCTCGGTCTCCCTCATTAGGTTGAATAAAGTTACTGTACATCGCCTTGAGGCACCCTGAGAGCCTTAAAGGATGGAAGTTTTGCGCCTTTCTTTATTTGACCTCCTGTAAGAGGATAAGGTAACTTAGTCTCTTGTTCTAATATGTCTTTTTCCTACGGTAAGTGCATTAGGGTGGGACTCTGGCACCGAAAACGAGGGGTTACACTTACACGGAATAGTTAAATGTTAACGATTCTAGACAGAAAAATGTTGGCTGTTAAGTTCAGTTCCAAGAGTTGGTTCTGCCTAATGGTTGAGAATGTCTCATCCCATTGAAGCGGCAATTGATCACCCCACCGGTGGCGTTTGTCCTGACTCACTGTGACATCATTGCAAAATAAAAGTCTATTACTTAGGGTACTTGAAACTATTTTGCAAAAACAAATTTGTTTAAAAGTATTTTCAACAACTTTTTCAAATGGCAACAACCACATTATCATTGTTAAGCACCGAAAAATTAACTGGCGACAATTTTTCAACATGGAAACATATGATCACAACGATCCTAATCATCGAGGATTTCATGTTCGCTTTCATGGAGGCTTGTCCTCCTATTCTAGCTTCAAATGCCACTCGAAATGTTCAGGAGGCATACGAGTGATGGACAAGGGCGAAAGAGAAGGCCCGAGCCTATATCTTGGCAAGTATTTCTGATGTCTTGGCCAAGAAGCATGAGCCTATGATCTCAGCTCAGAGATCATGGAGTCTCTACGGGGGATGTTTGGACAACCGTCTAAACAGCTTATGCATGAGGCTCTTAAGAACATATTCAACTCCAAAATGCAAGAAGGCACCTCTGTTTGTGAACATGTGCTAAACATGATGGTCCACTTCAATGTGGTGGAGTTGAATGAGTCTACCATCGATGAGGGCAGCCAGGTTAGCATAATTCTGCATTCTTTGTTGGAGAGCTTCCTACACTTTGTTAGCAATGTGATTCTAACAAAGTGAAATATAACCTTACAACTCTCCTCAACGAGTTGCAGACATACCAATCTTTATTGAAAAGTAAGGAGAGGTAGAAGAGTGAGGCAAATGTTGCTTCATCCTCCAGGAAGTGCCATAGAGGTTCGACCTCAGGAACAAAGTCTGCACCTTCCTCTTCTAACTCTGCAAAGGGAAAGAAGAAGAAGGGTAGTAAGGGAAAAGAGAAGGAACCTACTAACCTACCGCCTGTTGCCCCGAGGAGGCATCCACCAATTTCTAAATGAAAGTGTTTCCATTGCAATCAAGATGGGCATTTGAAGAGGAACTGTCCTCGATATCTGAAGGATAAGAAAACAGCCAAGGCTAAGGCCAAAGCAGATGAAGGTAAATATGATTTATTTGTACTTGAAACTTGTTTAGTGGAGAATAATGATTCTTCCTGGATAATTGATTCAGTTGCCACTAACCATGTTTGTTCTTCTTTTTAGGGGATTAGATCCTGAAGGCAGTTGGAAGCTGGTGAGATGACGATGCGAGTAGGCACCGGGCACGTCGTCCTAGCTGTGGCAGTGGGAGGGATCCAGTTGACTTTATAGAATAGGTTTCTAAATTTAATTGATGTATATATTGTTCCTGAATTAAAAAAGAACCTTATTTCTGTAAAGTGCTTATTGCAATGTAAATACACTATTTCTTTCGAATTGAGTAAAGCGTTT

mRNA sequence

CTCCGATGCATTTCCCCAATCACAGCATCCCAACACTTCCTAATGCCCCCCATTTTCATTTCTCTAGTTCCTCGCAATTCTCGCCGCCGCCCCTCTCCTCCTCCTCCTCTGCCGCCGCCCTCCTTCATTTTTCCTACTCAGATTTGGGAAATGTTTTATGAAGTGGAACTAGTTAAAGATGTGGAAATCACAGCGGAAAAGGAAAAGAGAGATGCTCTCAACTTTCAGAGGTACATTATAACATGTCTATTAGAGAACTTATTGAAGGAGAAGGCCAACAAAGACCATGGCTATTTTCTTGCTGTTACTAGCTTGAAGAGCATAGGCAAGGGAGTGGTTAACAGTCAGTCTCAATGTGTTTCATTCCCCATTACCTTTAGTTGTCGTACCTTTTTGCCTTTCGAGGGGGAGATCTTGCATGGAGTTGTTCATCACATATTTCGGCGTGGCTTACTCTTAAAATGTGGACCGATCAAGTACGTGTTTCTTTCAGCTTGTAAAATGCCAACCTACCATTATGTTGGTGGTGAAAATCCTGTATTCTCAAGTAACGAATTTGCAACGATCGGAAACGATGTCGTTGTACGGTTCAGTGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGTATCAAAAAAGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAACAACTCACTTGGACCTATTTCATTGTCTGACTCCGATGAGTTTGACTTGTAAATTTAGAATACAAACGACAAACTTGGGAATGTTTCACTGTAATATATTCTTACACGGCTTGCTTATTTCTTCCCTTTTTTATCTCTCTGTTTGATGTTCCTTTTGGCCATGATAATTCAAGAGTATTGTGGAATGTTAATTTGAGTGTCTTTGCATTAAGGACATCCGAGGACAGGATGGATTAGATCTTAGTTGGAGAATGGATATTTGCAGAACAGTATTGTTACTAAAGGCTTGGTTTCTGAATTTGTATTCAAAATCTTAATAGAGTCGATGTTTGCAATGTTCTACTTCTAAAGTCAATCGTCTGAAGGACAAAACTGAGAGAGGGAGGTTGAAGATGCTGGCATATTTCCAACCAACCGTTCTACGGACAATCAATCAAGAGATTTCTATTTGGTTTGTTCTCTATTTATTTCACGAATAGCTTAGCGAGTTCATTACTTAGGTCCATTTACAATTATGATCTTATTCATTAAGGAAAAGAAAAAGAAAGAAAGATTAAATTCGAGAGTGGGAAAAAACCCTTTACACTTTCCAACACTCCACATTTTCCAAAATCTTTTTTACACGTTCCAACACACTTCATACTTTCAAAAATCCTTTTTACACTTTCCAAATATCTTTTCACTTTCCAAAACTATTCCCCCCCAAATATTTCTCATTTCTTCTTCAATCTCCAATTTCTATTCCTTCACAAACTATCTTCTAACTTCCATTTCCGTTCACCATCGTATGAATAGTTCTTTTTCTTCTTTTCGACAATGCAAACAAAGCTCAAGTCTTCAACCGTCAGATTTTCTTGTCACCACATGCAGTTGCGTTCCTGTGTTTCGTCTGCAGTAGGCATGTTGCCGCTCGTGTCTCCGATCGTCGGAAATCCTTTTCCACCATGTGCATCTGTTGATCAGATTTCACCGTGGATCTGCGTTCAAGCGTTTAATCTCTGTCGCGGATCTCTGTTCCAACTCCATTGATCGAGTTTTTTTTTTTAAAAAAAGGAGCAAGCCCAAGGATTGAGTAGAAGAATAATTTATTGATCGAGTTTTTAAAAAGGAGCAAGCCCTAGGATCGAGTAAAGAATAATTTGGGAATTTTCAGTATATTGAATGATGATGTACAAAGGGCTCCAAAGGACTCAATATATACAATTACAAAAGAATCTTTGTATAACGAACTCTACATGTGTTGCCATGTAATTGATAGGGAGAAAACAGAATGGAAAGGGACAGGTAGAGGAATTGTTTAATCCACATCTTTGCACACGTCGACGGTCAACTTGGCTGAGTCATGGTTGACTTTGTCATGTTTCTTATCATCACTCCTCAAATTGGGATTGAGATCAATTAATCCAAACGTGGATTTGAAGTAGGAAAACTAGAAGTGACTCAGAGGTTTGGTGAGGCAATTTGCTACTTGTTCATTGGAAGGAACGTATCGAATGTCTAATTGTCCTTTAAGAAATTGATCATGAACATAGTGAACATCTATCTCAATATGTTTGGTTCGAGAGTGGAACACAGGATTTGAAGCTAAGGCTCCGGCACCAATATTATCACACCAGAGGACGTGTGGTCCAGAAAGTTTGAAACCAAGTTCTTCGATAAACTGATGTATTCATGAGATTTCAACAGAGGCATGGGCAAAGGCACAATATTCAGATTCTGTGTTTGACCTGGCCACAACAACTTGTTTCTTAGAGGACCATGAAATCAAATAGGTTCCAAGGAAAACAGAGTAAGCAACAACAGATTTTCGATCATCAATGTTGGATGCCCAATTAGCATCAGAGAAGGCAATAGAGATAGAGAGTCACTTGGTTGGATTAAAATGCCAAGGATATATGAATGCCCAGAAAGTAGTTCAAAATGCTAAGGTCTTTTAAGGAAAATTTTTTATCAAGATTTTTTATAAGGTGAAAGATGAAATGAGGGTCATTACTAGTAATAATAACGTCATCAACATTAATGAGCAGAAGAATGATTGTGGAGTGACGTCAAAGAAAATAGAGGGAAGCATCGGACTTACTGACAGAGAATCCACAACTGGTGAGAAAAGTTTAACCCGTAGATTATTTTGTTAACTTTGCAGACACATGAGGGATAACGAGAATCATTGAATCTAGGGGGTTGAGTCATGTAGACAACCTCTTTCAAGGTCCCATTAAGAAAAACGTTGTTGAAGTCCAGTTGTTGGAGAGACCACCCATCAGAAATAGCCAGAAATAAGACGATATGGATTGTTGATGATTTCACAACTGGACTGAAAGTGTCGAAGACGTCAACCCCCAGTGTCTGATAAAATCCTTTTGCAACGAGTCTCGCTTTGTGTCTTTGGACAGAACCATCAACGTTTTGCTTTAGAAAAAAAATACATCGACATCCAACAACAATGTATTGAGGGCAGAGAGGCATGAGAGTCTAGGTATTTAGGCGACAGAGGGCAGAGTACTCAGATTCCATTACTGCTTTCCAATGAGGAGAGGAAAGAGCATCACTGACCTTTAGAGGTCCTGTAAAGTAGAGTATGTGATGGATGATGGATTAGCTTCTGGTGCGGTTAGCCAAGCTTTGGGACGAAAGATGTCAACCTTTGCCCTGGCGATCATGGGATGATTGTTGATGACAGTAGAAGGTTTTGGAAGAGGTAGAGAAAAGGAGGGTTGAGGAAGATTAGAGGTAAAGTGATGAGGATGTGAGCTAGGCTCGGTTGAATTATTGGTTGAATAGAGTGGAGAAGAATGCGTCAATATGTTGGGATGGGGCGGGGAATCTTGAGTAGTGGAGATGAGCCTGAAAGTACTTGGATTTGGATCGGTAGGGTGAGGATAACCCATGTGAGAAAGTGACAGTGGGCTGAATGTCGATGAGGGCTGTTGAGGGATATTTTAAGAGGAAGCTGAATCATTATGAACATGAATTGGGCTGGACTATGATAGTAGTGAAGGAGGAGGAAACCAGGAAGAAATAGATGGGTGAGGTTTGGGTGGTGCAGTAGTTGGTCTTGGGTTGCCAAAGTTGTGTTTGAAGGAAAAATTATCCTCGTTAAAAATAACATGCCTAGTGATGAAGATACGACCTGTCAAGGAGAGACATCGATGCCCTTTATGAATGGCAGAGGGACCAAGATAGACACAACGATCTGAGTGGAAATCAAATTTGTATCGTTGATATGGTCTCAAGTTTGGGTAGTAGGCACAACCGAAAGTACGAAAAGAGGATATGTCCAGTGGCTTGTTGATGAGAAGTTCAACTAGAGATCTGCCCTGCAAAATAGGAGAAGAAAGCTCATTGATCAGTAAAACTGCAGTTTGAAAAGCAAACCACCAATATTTAAGAAGAATCAAAGCTTGGGCTAATAGAGTGAGCTCAGTTTCCACGATATGCCAGTGTTTACGTTCGGCTCTTCTGTTTTGAGCTGATGTATACGAGCATGATAGTCTAGTAAGAATGCCAAAACTAGTGCAGACTTATAATGGGCTGATATTCACCTATGTTGTGTTTAATTGATTTTGAACCATAGACTTAGAAGCAATAAAGGCATGAACCATAGACTTATAATGGGCTGACTGCTCGAACAATCAATAATCACGAATGCTCGATCTATATGACCGCAACACTGCACGAACACTTCGCGCTCGTCCTCAACGATCTCCTCGGTCACGAACTCCTCCGCAACACGAACGAACACCGTGCTTGTCCATAGCGACACGAACGGCCTCCACAACACCATGAACGGCCTCCAAAAAACCTCGACGATATCGAGTTGAGTCTGACACCACCAACAAGGCGTCCTTGGTATTCTCGGTGTGAGAATCCAGAGGGTGGGCTCTGTTCGGACTTAGTATGAGGCAGACGAATGGAGGAAACAACGATCGCGTACACGATTGGGCTAGTGGGAGATGGCTGAGACCTATCGTATAGGTTGATACCCAATCGTTTAGATAAAGCTATGTGATCATCTAGCAAAAGTTATGCGATCGTTTAGCTCTATCGTTTGGCTTGGTCTGTCACATACAGACTCTACACGATCATTTATCTTGGGCCAGCGGTTGTCTAGCAAAGCTATGCGATCATTTAGTAGACACTACATGATCGTTTAGCTCGCACTTGCACGATTGTTTAGCTCGCTCAGTCGTCGTTTAGTAAATATGTATTTACTTGACGACTTACGTGAGTTTCTTTTCACGAAGAGAAAATTTAAAAATCCTTTTTTTAAAAACTTTTGTAAAACCTACTTTTCAAAATAGGAAACCACCTTCCTTTTAAACTCACGGTTACCATGATCCAATAACCACCCATTACTTTGATTATTTAAAAGAAAAAGTATTAATTATCCAATAATTAATATTATTATAAATATAAATGATAACCAGCTTATCATACTATATTTATAACCTATAGTTTTAATATTTCATCTCATGAAACATATAAACCATAGTTCTTTTTCTATTCGATGGTACTTAATGTAAATCTCATTTACATCAATCCTCCACTAGATGTATCTTATACATCATACCGATTATATCATATATAATCAAAAAACCTATTGTCAATTTGAACATTTCAAATCAACACCAAGAACTGATCCTCAACAGAAATCCAAGCTACTAAGGGGACCTTATGGACCTGTAGATCCGAAGCTCCAACGGTACGTGAATAACTGATTAAACTCTTTAGTCACGGGATCCACCATCCGTTAACTGCCAGACACTCCACTAAAGACCAACAGCTGAACTCTCCTCACTACAGATATATTATGTGTCCATCTTAACCAATCGGCAGTGTGTCAACCCTTCACAGCTGTATTCAAAGTGTTTGAGTCTAGCTCTTCGAGGAAGGAGACGATCAAGGGTTGATCGTATCGTGTAGAAGCGGTTATACGCGATCGTTGTCCATTGCATCGTGAATATGAAGGCGTAAGCAATCATGGTTGAACGCAGCAGTTGAACGATGGCATATACGATCAAACATTGGTCGTATCGAAAAGATAATCGGGCATGCGATCGTTGAGCATCGTTTAAAGCACGCGCAAGCTAGACGATAGTTTAGGTCAGCAAGCTTCATCACTTAGTAACTGACTAAACGATCGCTTAGCAACGCAAGATAAATCGTTTATCAAGTTGCACGCTAAGTTAAACGATCAGACGCTCGCGTATCGTTTAAGCGCGCTAGACAATCGTTTAGGTCGGCAAGCTTCATTGCTTAGTAACTGACTAAATGATCGCTTAGTAACTTAAGGTAAATTGTTTACCTATCGTTGCACTATATGATCGCATGGGCGATCAGGCTTCGCAGCCTTGTCGTCGTCTACGCGATCGTTTGCTAAAGTTCCTATCATATAGTGTGTGCTGAACGATTGTCTACCTAATAAATATTGCTACACGATGGAGACCTTCTAGCGGTTCAAGACTCGGTTCGCTTGTGAACCGGTTTGCTTGATGATAAATGTAATAGATTGGTTTATTCATTCCGATTCATTTCGATTTAAAGGCTCATCCCGGTCTATTAATCTATTTGTTTAATACATACAATGTATATGTCATATGATATGCACATATAGTAAATCCTACCTTAGGTTATGCATTGATCATGCATCATCTCTTTATTGTAATTGTTATAATTTAGAGAAGCATGATTTAATTATGTTAGATCATGCTCATGCATCATATAATATAAGAGTTATATTTATGCATGCATAAAAAGCTTAGACATGCATCATCTTTATATTATAATTGTTATAGTATAAGGGTGAATGATAGCATGTTTCCTAGATTATTACGAGTTATATAAAAGTTATATAGTAATGACTGGAAATTGTATGAAGCATGACACATAAGTTATTTTATAAATGTTATAAGCGCCTAATTGTGTGCAATTTTTTTTAGTTGTTTCTTTTTTAAAACGTTAAAGAGAAATTAGAACTAAAAGAAATAAGATAGACATGCATGCTAACTTAAGTTTAATTCATGTTTTAAAATGTTTAAAACTTGGATCACATAGACCTAAGATCACGGTTCTATTATGATTAGCAACCCTAAGACTTTAATCTTTTAATCAGTTTAATAGGATTAAATTGGCTAATAAAAGGTTAAAATGTAGAAAATCTATCTATAAGGGACCTTTTGTCTAAGGCGGGTTCTGTCTATGCTGGGGTATTTAAGTTGACGGAAACGTAATACCCCTACTTGGGAACTTACGTGGAAAGGTGAATTAGATAGATTTGATGCATGCATGCAAGTTAATGACAGTCCATTAAAGTGTTTAAATGTGACTACTTGAACTTGTTTATATTTCATAAATGAATGTTGTTTATGTGCGGACTTTAAAAAGACCATATTCAGTTGGAGGTACTTGAGGCATGAGATACTTCACTTAAACCTTTCACTATTCTCCTTAAGTCCACACCGTGAGATCTATCCTCGGCCTCGCGGCACCTTTGGTGTGTCCCCCCAATGGATGGAGTTTGGGTAGGTCAATATCAAGGTGGATGGAGAGAATGTTCATAGTAAGTGGGAGTGGGAAGTGCGATAGCATATCCCTCGGTCTCCCTCATTAGGTTGAATAAAGTTACTGTACATCGCCTTGAGGCACCCTGAGAGCCTTAAAGGATGGAAGTTTTGCGCCTTTCTTTATTTGACCTCCTGTAAGAGGATAAGGTAACTTAGTCTCTTGTTCTAATATGTCTTTTTCCTACGGTAAGTGCATTAGGGTGGGACTCTGGCACCGAAAACGAGGGGTTACACTTACACGGAATAGTTAAATGTTAACGATTCTAGACAGAAAAATGTTGGCTGTTAAGTTCAGTTCCAAGAGTTGGTTCTGCCTAATGGTTGAGAATGTCTCATCCCATTGAAGCGGCAATTGATCACCCCACCGGTGGCGTTTGTCCTGACTCACTGTGACATCATTGCAAAATAAAAGTCTATTACTTAGGGTACTTGAAACTATTTTGCAAAAACAAATTTGTTTAAAAGTATTTTCAACAACTTTTTCAAATGGCAACAACCACATTATCATTGTTAAGCACCGAAAAATTAACTGGCGACAATTTTTCAACATGGAAACATATGATCACAACGATCCTAATCATCGAGGATTTCATGTTCGCTTTCATGGAGGCTTGTCCTCCTATTCTAGCTTCAAATGCCACTCGAAATGTTCAGGAGGCATACGAGTGATGGACAAGGGCGAAAGAGAAGGCCCGAGCCTATATCTTGGCAAGTATTTCTGATGTCTTGGCCAAGAAGCATGAGCCTATGATCTCAGCTCAGAGATCATGGAGTCTCTACGGGGGATGTTTGGACAACCGTCTAAACAGCTTATGCATGAGGCTCTTAAGAACATATTCAACTCCAAAATGCAAGAAGGCACCTCTGTTTGTGAACATGTGCTAAACATGATGGTCCACTTCAATGTGGTGGAGTTGAATGAGTCTACCATCGATGAGGGCAGCCAGGTTAGCATAATTCTGCATTCTTTGTTGGAGAGCTTCCTACACTTTGTTAGCAATGTGATTCTAACAAAGTGAAATATAACCTTACAACTCTCCTCAACGAGTTGCAGACATACCAATCTTTATTGAAAAGTAAGGAGAGGTAGAAGAGTGAGGCAAATGTTGCTTCATCCTCCAGGAAGTGCCATAGAGGTTCGACCTCAGGAACAAAGTCTGCACCTTCCTCTTCTAACTCTGCAAAGGGAAAGAAGAAGAAGGGTAGTAAGGGAAAAGAGAAGGAACCTACTAACCTACCGCCTGTTGCCCCGAGGAGGCATCCACCAATTTCTAAATGAAAGTGTTTCCATTGCAATCAAGATGGGCATTTGAAGAGGAACTGTCCTCGATATCTGAAGGATAAGAAAACAGCCAAGGCTAAGGCCAAAGCAGATGAAGGGGATTAGATCCTGAAGGCAGTTGGAAGCTGGTGAGATGACGATGCGAGTAGGCACCGGGCACGTCGTCCTAGCTGTGGCAGTGGGAGGGATCCAGTTGACTTTATAGAATAGGTTTCTAAATTTAATTGATGTATATATTGTTCCTGAATTAAAAAAGAACCTTATTTCTGTAAAGTGCTTATTGCAATGTAAATACACTATTTCTTTCGAATTGAGTAAAGCGTTT

Coding sequence (CDS)

ATGCCCCCCATTTTCATTTCTCTAGTTCCTCGCAATTCTCGCCGCCGCCCCTCTCCTCCTCCTCCTCTGCCGCCGCCCTCCTTCATTTTTCCTACTCAGATTTGGGAAATGTTTTATGAAGTGGAACTAGTTAAAGATGTGGAAATCACAGCGGAAAAGGAAAAGAGAGATGCTCTCAACTTTCAGAGGTACATTATAACATGTCTATTAGAGAACTTATTGAAGGAGAAGGCCAACAAAGACCATGGCTATTTTCTTGCTGTTACTAGCTTGAAGAGCATAGGCAAGGGAGTGGTTAACAGTCAGTCTCAATGTGTTTCATTCCCCATTACCTTTAGTTGTCGTACCTTTTTGCCTTTCGAGGGGGAGATCTTGCATGGAGTTGTTCATCACATATTTCGGCGTGGCTTACTCTTAAAATGTGGACCGATCAAGTACGTGTTTCTTTCAGCTTGTAAAATGCCAACCTACCATTATGTTGGTGGTGAAAATCCTGTATTCTCAAGTAACGAATTTGCAACGATCGGAAACGATGTCGTTGTACGGTTCAGTGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGTATCAAAAAAGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAACAACTCACTTGGACCTATTTCATTGTCTGACTCCGATGAGTTTGACTTGTAA

Protein sequence

MPPIFISLVPRNSRRRPSPPPPLPPPSFIFPTQIWEMFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGKGVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPTYHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPISLSDSDEFDL

Homology

[Close]

BLAST of BhiUN393G10 vs. TAIR10
Match: AT4G14520.1 (DNA-directed RNA polymerase II-related)

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-38
Identity = 86/202 (42.57%), Postives = 126/202 (62.38%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQ---RYIITCLLENLLKEKANKDHGYFLAVTSLKS 96
           MF EVE+ +DV I A+      LN Q   + I+  LL++L+ EKA ++HG++L +T+LKS
Sbjct: 1   MFSEVEMARDVAICAKH-----LNGQSPHQPILCRLLQDLIHEKACREHGFYLGITALKS 60

Query: 97  IGKGVVNS-------QSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKY 156
           IG    N+       Q++ ++FP++F+CRTFLP  G+IL G V  +   G  ++ GP++Y
Sbjct: 61  IGNNKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRY 120

Query: 157 VFLSACKMPTYHYVGG-----ENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEF 216
            +LS  KMP YHYV       E P F  ++ + I   VVVRF VL VR+ E+    + ++
Sbjct: 121 AYLSLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDY 180

Query: 217 VMLASLEGNNSLGPISLSDSDE 224
            +LA+LEGN S GPISL+ SDE
Sbjct: 181 YVLATLEGNGSFGPISLTGSDE 197

[Close]

BLAST of BhiUN393G10 vs. TAIR10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-37
Identity = 79/181 (43.65%), Postives = 117/181 (64.64%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MF +V+L  +V I AE      L  +R I+  LLE    +KA K+ GY++AVT+L  IG+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPT 156
           G +   +  V FP+ FS  TF  F+GEI+HGVVH + + G+ ++CGPI+ V+LS  KMP 
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 157 YHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 216
           Y Y+ GENP+F + + + I  +  VR  V+G++W+E    +++EF  LASLEG + LGP+
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWME----VEREFQALASLEG-DYLGPL 176

Query: 217 S 218
           S
Sbjct: 181 S 176

[Close]

BLAST of BhiUN393G10 vs. TAIR10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-33
Identity = 77/179 (43.02%), Postives = 108/179 (60.34%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MF +V+L  DV I AE +    L  QR I+  LLE   KEKA KD GY +  T L++IG+
Sbjct: 1   MFIKVKLPWDVTIPAE-DMDTGLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPT 156
           G +  Q+  + FP+ F+   F  F+GEI+HGVVH + + G+ LK GP + ++LS  KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 157 YHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGP 216
           Y ++ GENP F +   + I     VRF VL   W E     +K+F+ LAS++G+N LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWRE----AEKDFMALASIDGDN-LGP 173

[Close]

BLAST of BhiUN393G10 vs. TAIR10
Match: AT5G59180.1 (DNA-directed RNA polymerase II)

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-13
Identity = 40/155 (25.81%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MF+ + L +++++      R   N +  +++ L+++ ++   +  HG+ +A+T + +IGK
Sbjct: 1   MFFHIVLERNMQLHPRFFGR---NLKENLVSKLMKD-VEGTCSGRHGFVVAITGIDTIGK 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMP- 156
           G++   +  V+FP+ + C  F PF+GEIL  VV  + + G   + GP++ +F+S   +P 
Sbjct: 61  GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPD 120

Query: 157 TYHYVGGENPVFSSNEFAT-IGNDVVVRFSVLGVR 190
              +  G+ P +++++ +  I  +  VR  ++G R
Sbjct: 121 DMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR 150

[Close]

BLAST of BhiUN393G10 vs. Swiss-Prot
Match: sp|Q6NML5|RPB7L_ARATH (DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB7L PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.0e-37
Identity = 86/202 (42.57%), Postives = 126/202 (62.38%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQ---RYIITCLLENLLKEKANKDHGYFLAVTSLKS 96
           MF EVE+ +DV I A+      LN Q   + I+  LL++L+ EKA ++HG++L +T+LKS
Sbjct: 1   MFSEVEMARDVAICAKH-----LNGQSPHQPILCRLLQDLIHEKACREHGFYLGITALKS 60

Query: 97  IGKGVVNS-------QSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKY 156
           IG    N+       Q++ ++FP++F+CRTFLP  G+IL G V  +   G  ++ GP++Y
Sbjct: 61  IGNNKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRY 120

Query: 157 VFLSACKMPTYHYVGG-----ENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEF 216
            +LS  KMP YHYV       E P F  ++ + I   VVVRF VL VR+ E+    + ++
Sbjct: 121 AYLSLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDY 180

Query: 217 VMLASLEGNNSLGPISLSDSDE 224
            +LA+LEGN S GPISL+ SDE
Sbjct: 181 YVLATLEGNGSFGPISLTGSDE 197

[Close]

BLAST of BhiUN393G10 vs. Swiss-Prot
Match: sp|A6QRA1|NRPE7_ARATH (DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPE7 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.9e-36
Identity = 79/181 (43.65%), Postives = 117/181 (64.64%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MF +V+L  +V I AE      L  +R I+  LLE    +KA K+ GY++AVT+L  IG+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPT 156
           G +   +  V FP+ FS  TF  F+GEI+HGVVH + + G+ ++CGPI+ V+LS  KMP 
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 157 YHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 216
           Y Y+ GENP+F + + + I  +  VR  V+G++W+E    +++EF  LASLEG + LGP+
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWME----VEREFQALASLEG-DYLGPL 176

Query: 217 S 218
           S
Sbjct: 181 S 176

[Close]

BLAST of BhiUN393G10 vs. Swiss-Prot
Match: sp|Q8LE42|NRPD7_ARATH (DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPD7 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 8.2e-32
Identity = 77/179 (43.02%), Postives = 108/179 (60.34%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MF +V+L  DV I AE +    L  QR I+  LLE   KEKA KD GY +  T L++IG+
Sbjct: 1   MFIKVKLPWDVTIPAE-DMDTGLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPT 156
           G +  Q+  + FP+ F+   F  F+GEI+HGVVH + + G+ LK GP + ++LS  KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 157 YHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGP 216
           Y ++ GENP F +   + I     VRF VL   W E     +K+F+ LAS++G+N LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWRE----AEKDFMALASIDGDN-LGP 173

[Close]

BLAST of BhiUN393G10 vs. Swiss-Prot
Match: sp|P46279|RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-12
Identity = 42/155 (27.10%), Postives = 89/155 (57.42%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MF+ + L +++++      R   N +  +++ L+++ ++   +  HG+ +AVT +++IGK
Sbjct: 1   MFFHIVLERNMQLHPRYFGR---NLRDNLVSKLMKD-VEGTCSGRHGFVVAVTGIENIGK 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMP- 156
           G++   +  V+FP+ + C  F PF+GEIL  VV  + + G   + GP++ +F+S   +P 
Sbjct: 61  GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 120

Query: 157 TYHYVGGENPVFSSNEFAT-IGNDVVVRFSVLGVR 190
              +  G+ P +++++ +  I  D  VR  ++G R
Sbjct: 121 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR 150

[Close]

BLAST of BhiUN393G10 vs. Swiss-Prot
Match: sp|P38421|NRPB7_ARATH (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.5e-12
Identity = 40/155 (25.81%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MF+ + L +++++      R   N +  +++ L+++ ++   +  HG+ +A+T + +IGK
Sbjct: 1   MFFHIVLERNMQLHPRFFGR---NLKENLVSKLMKD-VEGTCSGRHGFVVAITGIDTIGK 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMP- 156
           G++   +  V+FP+ + C  F PF+GEIL  VV  + + G   + GP++ +F+S   +P 
Sbjct: 61  GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPD 120

Query: 157 TYHYVGGENPVFSSNEFAT-IGNDVVVRFSVLGVR 190
              +  G+ P +++++ +  I  +  VR  ++G R
Sbjct: 121 DMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR 150

[Close]

BLAST of BhiUN393G10 vs. TrEMBL
Match: tr|A0A1S3AWE2|A0A1S3AWE2_CUCME (DNA-directed RNA polymerase V subunit 7-like OS=Cucumis melo OX=3656 GN=LOC103483648 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 3.5e-96
Identity = 176/190 (92.63%), Postives = 181/190 (95.26%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MFYEVELV+DVEIT EKEKRDA NFQRYIITCLLENLLKEKANKDHGYFL+VTSLKSIGK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLKSIGK 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPT 156
           GVV ++SQCVSFPITF CRTFLPFEGEILHGVV HIF+RGLLLKCGPIKY FLSA KMPT
Sbjct: 61  GVVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYAFLSARKMPT 120

Query: 157 YHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 216
           Y YVGGENPVFSS EFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 217 SLSDSDEFDL 227
           SLSDSDEFDL
Sbjct: 181 SLSDSDEFDL 190

[Close]

BLAST of BhiUN393G10 vs. TrEMBL
Match: tr|A0A0A0L5A3|A0A0A0L5A3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G143540 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 3.5e-96
Identity = 175/190 (92.11%), Postives = 182/190 (95.79%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MFYEVELV+DVEIT EKEKRDA NFQRYIITCLLENLLKEKANKDHGYFL+VTSL+SIGK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLRSIGK 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPT 156
           G+V ++SQCVSFPITF CRTFLPFEGEILHGVV HIF+RGLLLKCGPIKYVFLSA KMPT
Sbjct: 61  GIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYVFLSARKMPT 120

Query: 157 YHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 216
           Y YVGGENPVFSS EFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 217 SLSDSDEFDL 227
           SLSDSDEFDL
Sbjct: 181 SLSDSDEFDL 190

[Close]

BLAST of BhiUN393G10 vs. TrEMBL
Match: tr|A0A2P4LLS2|A0A2P4LLS2_QUESU (Dna-directed rna polymerase v subunit 7 OS=Quercus suber OX=58331 GN=CFP56_34455 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 5.9e-67
Identity = 135/196 (68.88%), Postives = 155/196 (79.08%), Query Frame = 0


Query: 31  PTQIWEMFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTS 90
           P QI +MF EVEL++DV + AE   R+ L  QR IIT LLE++L EKA+KDHGYFLAVTS
Sbjct: 53  PNQIVDMFCEVELLRDVAVIAENLNRNGLVSQRSIITRLLEDMLNEKASKDHGYFLAVTS 112

Query: 91  LKSIGKGVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLS 150
           LK+IGKG V  +S  V FP+ F+CRTFLP+ GEIL GVV HIFR G+ L+CGPIKY FLS
Sbjct: 113 LKNIGKGEVVDESGDVFFPVVFNCRTFLPYTGEILQGVVSHIFRHGVFLRCGPIKYAFLS 172

Query: 151 ACKMPTYHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGN 210
           A KMP YH+V GENP+F S+E A I  D+VVRF VLGVRWIEKRG IKKEFVMLASL G 
Sbjct: 173 ARKMPNYHFVAGENPIFLSDELAKIEIDIVVRFVVLGVRWIEKRGRIKKEFVMLASLVG- 232

Query: 211 NSLGPISLSDSDEFDL 227
           +SLGPISLS SDE DL
Sbjct: 233 DSLGPISLSGSDELDL 247

[Close]

BLAST of BhiUN393G10 vs. TrEMBL
Match: tr|A0A2N9EIS4|A0A2N9EIS4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2537 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.4e-65
Identity = 131/190 (68.95%), Postives = 152/190 (80.00%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MF EVEL++DV + AE   R+ +  QR IIT LLE+L+KEK++KDHGYFLAVTSLK+IGK
Sbjct: 1   MFCEVELLRDVAVLAENLDRNGVISQRSIITRLLEDLVKEKSSKDHGYFLAVTSLKNIGK 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPT 156
           G V  +S  + FP+ F+CRTFLP +GEIL GVVHHIF  G+ L+CGPIKY FLSA KMP 
Sbjct: 61  GEVVDESGDIFFPVVFNCRTFLPSKGEILQGVVHHIFSHGVFLRCGPIKYAFLSARKMPN 120

Query: 157 YHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 216
           YHYV GENPVF S+E A I ND+VVRF VLGVRWIEKR  +KKEFVMLASL G +SLGPI
Sbjct: 121 YHYVAGENPVFLSDELAKIENDIVVRFVVLGVRWIEKRRLVKKEFVMLASLVG-DSLGPI 180

Query: 217 SLSDSDEFDL 227
           SLS SDE DL
Sbjct: 181 SLSGSDELDL 189

[Close]

BLAST of BhiUN393G10 vs. TrEMBL
Match: tr|A0A2N9EIP5|A0A2N9EIP5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2534 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.1e-64
Identity = 129/190 (67.89%), Postives = 149/190 (78.42%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MF EVEL++DV + AE   R+ +  QR IIT LLE+L+ EK++KDHGYFLAVTSLK+IG 
Sbjct: 1   MFCEVELLRDVAVLAENLDRNGVVSQRSIITRLLEDLVNEKSSKDHGYFLAVTSLKNIGN 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPT 156
           G V  +S  + FP+ F+CRTFLP  GEIL GVVHHIF  G+ L+CGPIKY FLSA KMP 
Sbjct: 61  GEVVDESGDIFFPVVFNCRTFLPLTGEILQGVVHHIFSHGVFLRCGPIKYAFLSARKMPN 120

Query: 157 YHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 216
           YHYV GENPVF S++ A I ND+VVRF VLGVRWIEKR  IKKEFVMLASL G +SLGPI
Sbjct: 121 YHYVAGENPVFLSDDLAKIENDIVVRFVVLGVRWIEKRRHIKKEFVMLASLVG-DSLGPI 180

Query: 217 SLSDSDEFDL 227
           SLS SDE DL
Sbjct: 181 SLSGSDELDL 189

[Close]

BLAST of BhiUN393G10 vs. NCBI nr
Match: XP_004134101.1 (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis sativus] >XP_004134102.1 PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis sativus] >KGN56913.1 hypothetical protein Csa_3G143540 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 5.3e-96
Identity = 175/190 (92.11%), Postives = 182/190 (95.79%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MFYEVELV+DVEIT EKEKRDA NFQRYIITCLLENLLKEKANKDHGYFL+VTSL+SIGK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLRSIGK 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPT 156
           G+V ++SQCVSFPITF CRTFLPFEGEILHGVV HIF+RGLLLKCGPIKYVFLSA KMPT
Sbjct: 61  GIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYVFLSARKMPT 120

Query: 157 YHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 216
           Y YVGGENPVFSS EFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 217 SLSDSDEFDL 227
           SLSDSDEFDL
Sbjct: 181 SLSDSDEFDL 190

[Close]

BLAST of BhiUN393G10 vs. NCBI nr
Match: XP_008438585.1 (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis melo] >XP_008438586.1 PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis melo])

HSP 1 Score: 360.1 bits (923), Expect = 5.3e-96
Identity = 176/190 (92.63%), Postives = 181/190 (95.26%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MFYEVELV+DVEIT EKEKRDA NFQRYIITCLLENLLKEKANKDHGYFL+VTSLKSIGK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLKSIGK 60

Query: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPT 156
           GVV ++SQCVSFPITF CRTFLPFEGEILHGVV HIF+RGLLLKCGPIKY FLSA KMPT
Sbjct: 61  GVVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYAFLSARKMPT 120

Query: 157 YHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 216
           Y YVGGENPVFSS EFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 217 SLSDSDEFDL 227
           SLSDSDEFDL
Sbjct: 181 SLSDSDEFDL 190

[Close]

BLAST of BhiUN393G10 vs. NCBI nr
Match: XP_022924760.1 (DNA-directed RNA polymerase V subunit 7-like [Cucurbita moschata] >XP_023528651.1 DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.6 bits (880), Expect = 5.2e-91
Identity = 170/192 (88.54%), Postives = 177/192 (92.19%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MF EVELV+DVE+T EKEKRD +N QRYIITCLLENLLKEKA+KDHGYFLAVTSLKSIGK
Sbjct: 1   MFCEVELVRDVEVTVEKEKRDGVNLQRYIITCLLENLLKEKASKDHGYFLAVTSLKSIGK 60

Query: 97  GVV--NSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKM 156
           G V   S+SQCVSFPITFSCRTFLP EGEILHGVV HIFRRGLLLKCGPIKYVFLSA KM
Sbjct: 61  GEVKNESESQCVSFPITFSCRTFLPLEGEILHGVVRHIFRRGLLLKCGPIKYVFLSARKM 120

Query: 157 PTYHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLG 216
           PTYHYVGGENPVFSS + ATIGNDVVVRFSVLGVRW+EKRGCIKKEFVMLASLEGN SLG
Sbjct: 121 PTYHYVGGENPVFSSTQSATIGNDVVVRFSVLGVRWLEKRGCIKKEFVMLASLEGNTSLG 180

Query: 217 PISLSDSDEFDL 227
           PIS SDSDEFDL
Sbjct: 181 PISSSDSDEFDL 192

[Close]

BLAST of BhiUN393G10 vs. NCBI nr
Match: XP_022980115.1 (DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita maxima] >XP_022980117.1 DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 339.0 bits (868), Expect = 1.3e-89
Identity = 168/192 (87.50%), Postives = 176/192 (91.67%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96
           MF EVELV++VE+T EKEKRD +N QRYIITCLLENLLKEKA+KDHGYFLAVTSLKSIGK
Sbjct: 1   MFCEVELVRNVEVTVEKEKRDGVNLQRYIITCLLENLLKEKASKDHGYFLAVTSLKSIGK 60

Query: 97  GVV--NSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKM 156
             V   S+SQCVSFPITFSCRTFLP EGEILHGVV HIFRRGLLLKCGPIKYVFLSA KM
Sbjct: 61  EEVKNESESQCVSFPITFSCRTFLPLEGEILHGVVRHIFRRGLLLKCGPIKYVFLSARKM 120

Query: 157 PTYHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLG 216
           PTYHYVGGENPVFSS + ATIGNDVVVRFSVLGVRW+EKRGCI KEFVMLASLEGN SLG
Sbjct: 121 PTYHYVGGENPVFSSTQSATIGNDVVVRFSVLGVRWLEKRGCINKEFVMLASLEGNTSLG 180

Query: 217 PISLSDSDEFDL 227
           PISLSDSDEFDL
Sbjct: 181 PISLSDSDEFDL 192

[Close]

BLAST of BhiUN393G10 vs. NCBI nr
Match: XP_022147266.1 (DNA-directed RNA polymerase V subunit 7-like [Momordica charantia])

HSP 1 Score: 328.2 bits (840), Expect = 2.2e-86
Identity = 163/193 (84.46%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 37  MFYEVELVKDVEITAEKEKRDAL-NFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIG 96
           MF EVEL +DVE+ AE EKRD   NF RYIITCLLENLLKEKA++DHGYFLAVT+LKSIG
Sbjct: 1   MFCEVELARDVEVMAENEKRDGFNNFHRYIITCLLENLLKEKASRDHGYFLAVTNLKSIG 60

Query: 97  KGVV--NSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACK 156
           KG V   SQSQC+SFP+TFSCRTFLPFEGEILHGVV HIFRRGLLL+CGPIKYVFLSA K
Sbjct: 61  KGEVKNESQSQCISFPVTFSCRTFLPFEGEILHGVVRHIFRRGLLLRCGPIKYVFLSARK 120

Query: 157 MPTYHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSL 216
           MPTY YVGG+NP+FSS+E ATI NDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSL
Sbjct: 121 MPTYRYVGGKNPLFSSDECATIENDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSL 180

Query: 217 GPISLSDSDEFDL 227
           GPIS S+SDEFDL
Sbjct: 181 GPISSSESDEFDL 193

The following BLAST results are available for this feature:

BLAST of BhiUN393G10 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14520.1	2.8e-38	42.57	DNA-directed RNA polymerase II-related	[more]
AT4G14660.1	1.1e-37	43.65	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT3G22900.1	4.6e-33	43.02	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT5G59180.1	3.1e-13	25.81	DNA-directed RNA polymerase II	[more]

BLAST of BhiUN393G10 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NML5\|RPB7L_ARATH	5.0e-37	42.57	DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana OX=37...	[more]
sp\|A6QRA1\|NRPE7_ARATH	1.9e-36	43.65	DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPE7...	[more]
sp\|Q8LE42\|NRPD7_ARATH	8.2e-32	43.02	DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]
sp\|P46279\|RPB7_SOYBN	1.5e-12	27.10	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|P38421\|NRPB7_ARATH	5.5e-12	25.81	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]

BLAST of BhiUN393G10 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWE2\|A0A1S3AWE2_CUCME	3.5e-96	92.63	DNA-directed RNA polymerase V subunit 7-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A0A0L5A3\|A0A0A0L5A3_CUCSA	3.5e-96	92.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G143540 PE=4 SV=1	[more]
tr\|A0A2P4LLS2\|A0A2P4LLS2_QUESU	5.9e-67	68.88	Dna-directed rna polymerase v subunit 7 OS=Quercus suber OX=58331 GN=CFP56_34455...	[more]
tr\|A0A2N9EIS4\|A0A2N9EIS4_FAGSY	1.4e-65	68.95	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2537 PE=4 SV=1	[more]
tr\|A0A2N9EIP5\|A0A2N9EIP5_FAGSY	6.1e-64	67.89	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2534 PE=4 SV=1	[more]

BLAST of BhiUN393G10 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134101.1	5.3e-96	92.11	PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis sativus] >XP_00...	[more]
XP_008438585.1	5.3e-96	92.63	PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis melo] >XP_00843...	[more]
XP_022924760.1	5.2e-91	88.54	DNA-directed RNA polymerase V subunit 7-like [Cucurbita moschata] >XP_023528651....	[more]
XP_022980115.1	1.3e-89	87.50	DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita maxima] >XP_0...	[more]
XP_022147266.1	2.2e-86	84.46	DNA-directed RNA polymerase V subunit 7-like [Momordica charantia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR036898	RNA_pol_Rpb7-like_N_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000932	cytoplasmic mRNA processing body
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN393M10	BhiUN393M10	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 121..217 e-value: 2.6E-13 score: 51.8
None	No IPR available	PANTHER	PTHR12709:SF3	DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 7-RELATED	coord: 37..216
None	No IPR available	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 37..216
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	G3DSA:3.30.1490.120		coord: 37..120 e-value: 7.5E-12 score: 47.6
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	SSF88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 37..117
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 119..191

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
BhiUN393G10	Csa3G143540	Cucumber (Chinese Long) v2	cuwgoB310
BhiUN393G10	MELO3C006473	Melon (DHL92) v3.5.1	mewgoB555
BhiUN393G10	ClCG05G004640	Watermelon (Charleston Gray)	wcgwgoB449
BhiUN393G10	CSPI03G12500	Wild cucumber (PI 183967)	cpiwgoB312
BhiUN393G10	Cucsa.254900	Cucumber (Gy14) v1	cgywgoB530
BhiUN393G10	CmaCh06G013410	Cucurbita maxima (Rimu)	cmawgoB1027
BhiUN393G10	CmaCh14G017770	Cucurbita maxima (Rimu)	cmawgoB0345
BhiUN393G10	CmoCh06G013530	Cucurbita moschata (Rifu)	cmowgoB1021
BhiUN393G10	CmoCh14G018140	Cucurbita moschata (Rifu)	cmowgoB0334
BhiUN393G10	Lsi05G016680	Bottle gourd (USVL1VR-Ls)	lsiwgoB465
BhiUN393G10	Cp4.1LG08g03740	Cucurbita pepo (Zucchini)	cpewgoB1121
BhiUN393G10	CsGy3G012640	Cucumber (Gy14) v2	cgybwgoB300
BhiUN393G10	MELO3C006473.2	Melon (DHL92) v3.6.1	medwgoB559
BhiUN393G10	CsaV3_3G012620	Cucumber (Chinese Long) v3	cucwgoB316
BhiUN393G10	Cla021567	Watermelon (97103) v1	wgowmB289
BhiUN393G10	Cla97C05G085670	Watermelon (97103) v2	wgowmbB280

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
BhiUN393G10	Cucurbita pepo (Zucchini)	cpewgoB0801
BhiUN393G10	Silver-seed gourd	carwgoB0298
BhiUN393G10	Silver-seed gourd	carwgoB1125