Cp4.1LG12g01550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g01550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA-directed RNA polymerase II subunit RPB7
LocationCp4.1LG12 : 991069 .. 995385 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTATTAAACATGTGATCAATGAGATTATTGTGGGGTTTATTTTTGGAGTAGGAGATTATTAAACATGTGGTTATTTGGACTAGTAGTGGGATTGTATTTGGTCAAACTTTCTGCCTGGCTCGTTTTGGAGGACTTGAACATAGGAATTGACTCAATCTTGAAACTCTTTGACCGTGGATCCCACACATGCATAGGTCCTAGTTGAGTTGGCGGAGGGATTTTTGATAAATTTTAAAGTTCGGGTTTATTGGATTGGTAATTCAATCCAACTCGAAATTTTTCACAACCCAATTCTCTATTTTATGGTTAGGTTCGGGTTGTGAAATAACAAAGTTCGAACAGTGCAGTTTGACGACAAACACCGAGTGGAGAAGTCTGAAGAAAGTGGAACGGAGCGTCAAGCAGAGAGATAGTTGGTGATAACGTTTGATGAGAAACACAGAGACGTGGTCGAGTGGAGAAATGGGAACTGAGAAGGGAGTTCAACGGAGAAATAAAGAGATGAGCGATGTTGACGTCCGAAGATACACATAGACGAGACAAGAGATGAAACATAGAGAGAGTTGAGAGGAGTCAAAAGACGAACACTATGATGCGAGTGTGTGAGAACCGAGACTTCATTTCACTTACCCAATTACCCTCAAGGTTGAAGATGAGCGCTGTGTGAGACTACGAGACAAAGTCTCGAATTCACTCTGCAGACACACCAGGGGCAGACACATACGATGACTCATGGGCTTCTACTGCATGGGCTTGGGCCTATTTTATTATTATTGTTTTTTTTAAGGCTTTCGAGTTGAGTTGGGTTGTCCCAATGATTTGAATTTTGAACCCGAACACAATCCGAACCAGATCGGATTCCAAAAAACAAATCCACCCAAATGCGAAATCCTTTAAAACCCAATCCGACCCTTATAATTCGGGTCGGGTCGGGTCGGGGTGCCTCCATTTCAACACGAAGGAAGCCCAAAAACAAAATTGGCCCAATGGGCTTTGTCAACAACAAAGAACCAAAACCGAGTTGGGACGAGGTCCGTTGTAGCGTTAAAATTGCGATTTAGCGGGAGGCCGTGAAACTCGGTAACCGGAAGGGGCAACTTTCTTCTTCTTCTTCTTCTTCTTCAGGTTTGTTCTGAAACCCTAGCTTTAAATCATTCTTCTGGTTATGTTTGATTCGTGTTAGTTGCTTCTCATTATGATTATTTGGATGCTTGAATTTCTTGAACAATAGCACTTTCTAATTCTCTCTCTCTTTCGCTCTTCCACTCAAAATCACCAATACTTCAATGGCTAAAATAGTGCCATTGTCAAAATTTTCAACGATCGTTTCTTATTCTATGTATGATGTGAAGGGGGTTTGCTATCTAATTAGTCTCCAATCATATATGATTAGAGTTTGATTCTTTTTGGTACGATTATACTGTTGCTCGAATTTACTGAACAATGTCGTTACTGATCACTCATGGATACACGCTAATGGTTTAATGGGAAAGGAAAGTGGTGCTATTTGATCATCATCTAGAAGGATCGATAGTTTAGCATGAGGATGTGTTTTTTTTTTAACTGAGAATTTCATGTTTGAAATTTACAAAAAGAATGTGTTAGGATAAGGGAGGTATGACTATAAGAAGCAAAGGTATTAAACAATTTACTCCAAGAAGATATGAAAATTTAGAAGATTCTAGTATACGTTTGTGTTTTCTCTATGTATACTCTTTGATTTTTTTTTCTTTCCATAGATTCCAAAGGAAGTCCATAATAAGCTTTTGTCAGAGTTTTTGCATTCGTGAAAGAGGTGGTATGTTAAGGCCATGTCCAATAAATCCTTTACCTCCCTAGGAAAAGTGAGATGCCATTTGAAAATATTGAGTGAGATGCCATAGGAAAAGTATATGTGCACTTGATTCGATATCTTTCTTGCATAATTAACACAAATTTGAAAATAGAATCATGTAGGGCATTCTTTGGTTGTCATTTTTAATATGGGTTTAATATTGTTGGGGTTCTCCTCCAGTCCCCTGCTCGATTCCCCTTTCACCTTGGAGCCAAGCTTTCCTAAATATGGTAGTGGGGAAAATACAAGAATAGAGAAAATCAGGGTAAATAATGTGAGTTTTCTGTTCTAGAGTAGTCATAGATTATGTTGAAGGCGACGAAGAGAGTGAATCTGATATATCACTTGGCAAATTAGTTAAATCATGAAGCATGACTAAAGCAATATGAAATTTATCTCAGGGAAGGGAGTTATTATTATTTTTTTTTTCATACATGCACAGGCAAGTTGAGTCTGGGGAGATGAGTATCAGTCAATTCAGTCAGATTGGCCTTTCGGTGCCATTTGTTCAAGACATTGTTGGATTTGGAAGTAACTGATAAAATTTCCTTTTCTCTGCTTCATTTGCATTTACACTAGATTATAAGAAAGAAATCTAGTTTGGTTAGAGTTAGATGTGTATAGCTGGTAATGGTGGTCAAATCCATTGGAGGAGGCTCTTTTCATTTTTTCATTTTTTCATTATTGTTCTTATTCAAAGTTTTAAAGGTAACATTGTAATGGTGTTACCACAACTGGATATTGGGGAATATGATAACTTTAGTCGCATCATTTGAATTTAGATAAAATGCTACTTAGAATCAAAATACTGATTGTAACTTGTAAGTCTTACTCCTCAAGATTTCTGATAGGTTGAAGGAAGAAGTAGGAAAAATGTTTCTCAAAGTGCAGCTGCCATGGAATGTCATAATCCCTGCTGAAAACTTAGATGCAAAGGGCTTGATGCTCCAAAGGTCTATTATAATCCGTCTGCTAGATGAATTTGCCACAAAAAAGGCCACAAAGGATCTCGGTTATTTCCTCGCAGTTACGACTCTAGAAAATATAGGAGAAGGGAAAGTTCGACAGACGGGTGACGTCTTGTTTCCAGTTATTTTTAGTGGTATCACCTTCAAGCTTTATAGGGGAGAGATCTTGGAGGGGGTTGTTCACAAGGTTCTCAAGCATGGTGTTTTCTTGAGATGTGGCCCTGTTGAGAACATATATCTCTCTTATCTGAAAATGCCAGATTACCGCTATGTGCCGGGCGAGAATCCCTTGTTCATGAACGACAAGCTTTCAAAAATTGAGAAAGATGTAGTCGTACGTTTTATCGTCATTGGCACGAAGTGGCTCGAGGCAGAAAGGGAGTTTCAGGCACTGGTGAGTTTGGAGGGTGATTATCTAGGGCCAGTTTCTTAATGAATTTCAGGCACTGGTTAAGTTTGTATTCTGTATCTAAGTACATGTCTCGATAACATTCGGACTCATTTCGATGTAACTAACCTTGTTGGAGGTTGGAAGTTCGGGATGGAACAAAGTTTAGGGGACATTATTAATTGAAGCTAAATGTTTGTAGGAAGTATCTTGGACAATGAACAGTGTCCCACTCTGTTTAATTATCTTGTTTATTGCTGCATATGGACATAGAATATGTTAGATATTTAAGTTCCAAGCATTCAACTCTTGGATGTTTATTATACTCATGAAACATAGCCTACGAACCAAATGGATCGCAGGCTCATCATACAGAGTTTCCATTGAAGAAGATGAATAAAGAGAACAGAAGAACATCCTTAGTATAACCCACATGGCTTTAGGTGATGAGCAGAGGCAGCCAAATGGGGTATTATTTAGCAGTAGTAGAAGAAGAATAAGATGGTCTAAAGAACATCAGGGCCGCCATGGCAGCATGTGAATCTTATACCGCTTCCCATGTAGCGACGACACACAGGGCAGGTGATGATCAGAGGAATCCACCCGCTAAACCCGATTATATTCACATGTGTGCAGTGAAGGCTGCTGGCAGTGAGCTCGTCGAAGTAATCTTTGTAAGAACCAGAGAAGCCTACTCGACGCAAGTTTTTCTTCCATATTTGGAACTCGTCAATGGCTTTTAGTATCAAATCGCCACCACCGATGAACACGACTGTCGGACCTTTGGTTATGATTGCCCATCCTTTCTCAGTTTCGTAAGATATCAATCGGGAGATATCTTCGGAGGCAGTCGATCCATGTAGTTGATGCTTGAGAATGAAGTAACTCCGTTGCGCCATCCAGAAATTAAACATGACGGTTGGATCATGTTCGCCTTTGTTGTTCCGTCCCACGGGTACTAATTCAAATGTAATTCCTTCTTCTCTGGTCACAGGATCTCTCTTCATGGCTTCTGCTGAGTCTTCAAAATTTTTAACCCATCTGGGATTGTGTCCTCCATAGAATATGACATTCCTTTCCTGGTTAATCTGGTTCAAAGAACGGTTGTTATGAGTTTAGAT

mRNA sequence

ATGAGGTTGAAGGAAGAAGTAGGAAAAATGTTTCTCAAAGTGCAGCTGCCATGGAATGTCATAATCCCTGCTGAAAACTTAGATGCAAAGGGCTTGATGCTCCAAAGGTCTATTATAATCCGTCTGCTAGATGAATTTGCCACAAAAAAGGCCACAAAGGATCTCGGTTATTTCCTCGCAGTTACGACTCTAGAAAATATAGGAGAAGGGAAAGTTCGACAGACGGGTGACGTCTTGTTTCCAGTTATTTTTAGTGGTATCACCTTCAAGCTTTATAGGGGAGAGATCTTGGAGGGGGTTGTTCACAAGGTTCTCAAGCATGGTGTTTTCTTGAGATGTGGCCCTGTTGAGAACATATATCTCTCTTATCTGAAAATGCCAGATTACCGCTATGTGCCGGGCGAGAATCCCTTGTTCATGAACGACAAGCTTTCAAAAATTGAGAAAGATGTAGTCGTACGTTTTATCGTCATTGGCACGAAGTGGCTCGAGGCAGAAAGGGAGTTTCAGGCACTGGTGAGTTTGGAGGGTGATTATCTAGGGCCAGTTTCTTAATGAATTTCAGGCACTGGTTAAGTTTGTATTCTGTATCTAAGTACATGTCTCGATAACATTCGGACTCATTTCGATGTAACTAACCTTGTTGGAGGTTGGAAGTTCGGGATGGAACAAAGTTTAGGGGACATTATTAATTGAAGCTAAATGTTTGTAGGAAGTATCTTGGACAATGAACAGTGTCCCACTCTGTTTAATTATCTTGTTTATTGCTGCATATGGACATAGAATATGTTAGATATTTAAGTTCCAAGCATTCAACTCTTGGATGTTTATTATACTCATGAAACATAGCCTACGAACCAAATGGATCGCAGGCTCATCATACAGAGTTTCCATTGAAGAAGATGAATAAAGAGAACAGAAGAACATCCTTAGTATAACCCACATGGCTTTAGGTGATGAGCAGAGGCAGCCAAATGGGGTATTATTTAGCAGTAGTAGAAGAAGAATAAGATGGTCTAAAGAACATCAGGGCCGCCATGGCAGCATGTGAATCTTATACCGCTTCCCATGTAGCGACGACACACAGGGCAGGTGATGATCAGAGGAATCCACCCGCTAAACCCGATTATATTCACATGTGTGCAGTGAAGGCTGCTGGCAGTGAGCTCGTCGAAGTAATCTTTGTAAGAACCAGAGAAGCCTACTCGACGCAAGTTTTTCTTCCATATTTGGAACTCGTCAATGGCTTTTAGTATCAAATCGCCACCACCGATGAACACGACTGTCGGACCTTTGGTTATGATTGCCCATCCTTTCTCAGTTTCGTAAGATATCAATCGGGAGATATCTTCGGAGGCAGTCGATCCATGTAGTTGATGCTTGAGAATGAAGTAACTCCGTTGCGCCATCCAGAAATTAAACATGACGGTTGGATCATGTTCGCCTTTGTTGTTCCGTCCCACGGGTACTAATTCAAATGTAATTCCTTCTTCTCTGGTCACAGGATCTCTCTTCATGGCTTCTGCTGAGTCTTCAAAATTTTTAACCCATCTGGGATTGTGTCCTCCATAGAATATGACATTCCTTTCCTGGTTAATCTGGTTCAAAGAACGGTTGTTATGAGTTTAGAT

Coding sequence (CDS)

ATGAGGTTGAAGGAAGAAGTAGGAAAAATGTTTCTCAAAGTGCAGCTGCCATGGAATGTCATAATCCCTGCTGAAAACTTAGATGCAAAGGGCTTGATGCTCCAAAGGTCTATTATAATCCGTCTGCTAGATGAATTTGCCACAAAAAAGGCCACAAAGGATCTCGGTTATTTCCTCGCAGTTACGACTCTAGAAAATATAGGAGAAGGGAAAGTTCGACAGACGGGTGACGTCTTGTTTCCAGTTATTTTTAGTGGTATCACCTTCAAGCTTTATAGGGGAGAGATCTTGGAGGGGGTTGTTCACAAGGTTCTCAAGCATGGTGTTTTCTTGAGATGTGGCCCTGTTGAGAACATATATCTCTCTTATCTGAAAATGCCAGATTACCGCTATGTGCCGGGCGAGAATCCCTTGTTCATGAACGACAAGCTTTCAAAAATTGAGAAAGATGTAGTCGTACGTTTTATCGTCATTGGCACGAAGTGGCTCGAGGCAGAAAGGGAGTTTCAGGCACTGGTGAGTTTGGAGGGTGATTATCTAGGGCCAGTTTCTTAA

Protein sequence

MRLKEEVGKMFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGEGKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Homology
[Close]
BLAST of Cp4.1LG12g01550 vs. Swiss-Prot
Match: NRPE7_ARATH (DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana GN=NRPE7 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 5.2e-77
Identity = 128/176 (72.73%), Postives = 162/176 (92.05%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MFLKVQLPWNV+IPAEN+DAKGLML+R+I++ LL+ FA+KKATK+LGY++AVTTL+ IGE
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 70  GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 129
           GK+R+ TG+VLFPV+FSG+TFK+++GEI+ GVVHKVLKHGVF+RCGP+EN+YLSY KMPD
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 130 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           Y+Y+PGENP+FMN+K S+I+ +  VR +VIG KW+E EREFQAL SLEGDYLGP+S
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLS 176

[Close]
BLAST of Cp4.1LG12g01550 vs. Swiss-Prot
Match: NRPD7_ARATH (DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana GN=NRPD7 PE=1 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.8e-59
Identity = 106/174 (60.92%), Postives = 142/174 (81.61%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MF+KV+LPW+V IPAE++D  GLMLQR+I+IRLL+ F+ +KATKDLGY +  T LENIGE
Sbjct: 1   MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 70  GKVR-QTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 129
           GK++ QTG++ FPV+F+GI FK+++GEI+ GVVHKV K GVFL+ GP E IYLS++KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 130 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGP 183
           Y ++PGENP FMN  +S+I+    VRF+V+ T+W EAE++F AL S++GD LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173

[Close]
BLAST of Cp4.1LG12g01550 vs. Swiss-Prot
Match: RPB7L_ARATH (DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana GN=NRPB7L PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-24
Identity = 74/193 (38.34%), Postives = 107/193 (55.44%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MF +V++  +V I A++L+  G    + I+ RLL +   +KA ++ G++L +T L++IG 
Sbjct: 1   MFSEVEMARDVAICAKHLN--GQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 70  GKVR--------QTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYL 129
            K          Q   + FPV F+  TF   RG+IL+G V KVL +G F+R GP+   YL
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 130 SYLKMPDYRYV-----PGENPLFMNDKLSKIEKDVVVRFIVIGTKWLE----AEREFQAL 185
           S LKMP Y YV       E P F  D LSKI   VVVRF V+  ++ E       ++  L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

[Close]
BLAST of Cp4.1LG12g01550 vs. Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-15
Identity = 50/131 (38.17%), Postives = 79/131 (60.31%), Query Frame = 1 

Query: 56  GYFLAVTTLENIGEGKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCG 115
           G+ +AVT +ENIG+G +R  TG V FPV +  + F+ ++GEILE VV  V K G F   G
Sbjct: 43  GFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102

Query: 116 PVENIYLSYLKMPDYRYVPGENPLF-MNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALV 175
           PV+    ++L   D  +  G+ P +  +D   KI+KD  VR  +IGT+ ++A   F  + 
Sbjct: 103 PVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIG 162

Query: 176 SLEGDYLGPVS 185
           +++ D+LG ++
Sbjct: 163 TIKDDFLGVIN 171

[Close]
BLAST of Cp4.1LG12g01550 vs. Swiss-Prot
Match: NRPB7_ARATH (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.1e-14
Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 1 

Query: 30  KGLMLQRSIIIRLLDEFATKKATKDL--------GYFLAVTTLENIGEGKVRQ-TGDVLF 89
           + + L      R L E    K  KD+        G+ +A+T ++ IG+G +R  TG V F
Sbjct: 9   RNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTF 68

Query: 90  PVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPLF- 149
           PV +  + F+ ++GEILE VV  V K G F   GPV+     +L   D  +  G+ P + 
Sbjct: 69  PVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYT 128

Query: 150 MNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
            +D   KI+K+  VR  +IGT+ ++A   F  + +++ D+LG ++
Sbjct: 129 TSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171

[Close]
BLAST of Cp4.1LG12g01550 vs. TrEMBL
Match: A0A0A0LKQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193330 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 4.2e-94
Identity = 173/175 (98.86%), Postives = 175/175 (100.00%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 70  GKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 129
           GKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY
Sbjct: 61  GKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120

Query: 130 RYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           RYVPGENP+F+NDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175

[Close]
BLAST of Cp4.1LG12g01550 vs. TrEMBL
Match: B9HKE3_POPTR (RNA polymerase Rpb7 N-terminal domain-containing family protein OS=Populus trichocarpa GN=POPTR_0008s16160g PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 6.1e-85
Identity = 153/176 (86.93%), Postives = 170/176 (96.59%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MFLKVQLPWNVIIPAENLDAKGLMLQRSI++RLLD+FA K ATKDLGY+LAV+TLE+IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGE 60

Query: 70  GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 129
           GKVRQ TGDVLFPV+FSGITFK++RGEIL+G+VHKVLKHGV LRCGP+ENIYLS +KMPD
Sbjct: 61  GKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPD 120

Query: 130 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           YRYVPGENP+F+NDK SKIEKDVVVRF+V+GTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176

[Close]
BLAST of Cp4.1LG12g01550 vs. TrEMBL
Match: B9S9D8_RICCO (DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative OS=Ricinus communis GN=RCOM_0884250 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.3e-84
Identity = 154/176 (87.50%), Postives = 171/176 (97.16%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           M+LKVQLPWNVII AE+LDAKGLMLQRSIIIRLL++FA+KKATKDLGY+LAVTTLE+IGE
Sbjct: 1   MYLKVQLPWNVIISAEHLDAKGLMLQRSIIIRLLEDFASKKATKDLGYYLAVTTLESIGE 60

Query: 70  GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 129
           GKVR+ TGDVLFPV+F+GITFK++RGEILEGVVHKVLKHGVF+RCGP+ENIYLS +KMPD
Sbjct: 61  GKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKMPD 120

Query: 130 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           Y YVPGENP+F+NDK SKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 YHYVPGENPVFLNDKTSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176

[Close]
BLAST of Cp4.1LG12g01550 vs. TrEMBL
Match: A0A061FY25_THECC (RNA polymerase Rpb7-like, N-terminal domain OS=Theobroma cacao GN=TCM_044847 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 4.4e-83
Identity = 151/176 (85.80%), Postives = 169/176 (96.02%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MFLKVQLPWNVIIPA++L AKGLMLQ++I++RLLD+FA KKATKDLGYF+AVTTLE+IG+
Sbjct: 1   MFLKVQLPWNVIIPADSLGAKGLMLQKAIVVRLLDDFACKKATKDLGYFIAVTTLESIGD 60

Query: 70  GKVR-QTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 129
           GKVR  TGDVLFPV+FSGITFK++RGEILEGVVHK+LKHGVFLRCGPV+NIYLS+LKMPD
Sbjct: 61  GKVRQNTGDVLFPVVFSGITFKMFRGEILEGVVHKILKHGVFLRCGPVQNIYLSHLKMPD 120

Query: 130 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           Y YVPGEN +FMN+K SKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 YHYVPGENAIFMNEKHSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176

[Close]
BLAST of Cp4.1LG12g01550 vs. TrEMBL
Match: A0A067KVA5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10526 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 4.4e-83
Identity = 151/176 (85.80%), Postives = 169/176 (96.02%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MF+KVQLPWNVIIPAENLDAKGLMLQRSIIIRLL++FA KKATKDLGY+LAVTTLE IGE
Sbjct: 1   MFIKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLEDFAIKKATKDLGYYLAVTTLEKIGE 60

Query: 70  GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 129
           GKVRQ +GDVLFPV+F+GITFK++RGEILEGVVHKVLKHGVFLRCGP+E+IYLS +KMPD
Sbjct: 61  GKVRQHSGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFLRCGPIEHIYLSCMKMPD 120

Query: 130 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           Y YVPGENP+F+N+K SKIEK+ VVRFIV+GTKWLEAEREF+ALVSLEGDYLGPVS
Sbjct: 121 YHYVPGENPVFLNEKTSKIEKETVVRFIVLGTKWLEAEREFRALVSLEGDYLGPVS 176

[Close]
BLAST of Cp4.1LG12g01550 vs. TAIR10
Match: AT4G14660.1 (AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 288.5 bits (737), Expect = 2.9e-78
Identity = 128/176 (72.73%), Postives = 162/176 (92.05%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MFLKVQLPWNV+IPAEN+DAKGLML+R+I++ LL+ FA+KKATK+LGY++AVTTL+ IGE
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 70  GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 129
           GK+R+ TG+VLFPV+FSG+TFK+++GEI+ GVVHKVLKHGVF+RCGP+EN+YLSY KMPD
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 130 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           Y+Y+PGENP+FMN+K S+I+ +  VR +VIG KW+E EREFQAL SLEGDYLGP+S
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLS 176

[Close]
BLAST of Cp4.1LG12g01550 vs. TAIR10
Match: AT3G22900.1 (AT3G22900.1 RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 228.8 bits (582), Expect = 2.7e-60
Identity = 106/174 (60.92%), Postives = 142/174 (81.61%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MF+KV+LPW+V IPAE++D  GLMLQR+I+IRLL+ F+ +KATKDLGY +  T LENIGE
Sbjct: 1   MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 70  GKVR-QTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 129
           GK++ QTG++ FPV+F+GI FK+++GEI+ GVVHKV K GVFL+ GP E IYLS++KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 130 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGP 183
           Y ++PGENP FMN  +S+I+    VRF+V+ T+W EAE++F AL S++GD LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173

[Close]
BLAST of Cp4.1LG12g01550 vs. TAIR10
Match: AT4G14520.1 (AT4G14520.1 DNA-directed RNA polymerase II-related)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-25
Identity = 74/193 (38.34%), Postives = 107/193 (55.44%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MF +V++  +V I A++L+  G    + I+ RLL +   +KA ++ G++L +T L++IG 
Sbjct: 1   MFSEVEMARDVAICAKHLN--GQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 70  GKVR--------QTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYL 129
            K          Q   + FPV F+  TF   RG+IL+G V KVL +G F+R GP+   YL
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 130 SYLKMPDYRYV-----PGENPLFMNDKLSKIEKDVVVRFIVIGTKWLE----AEREFQAL 185
           S LKMP Y YV       E P F  D LSKI   VVVRF V+  ++ E       ++  L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

[Close]
BLAST of Cp4.1LG12g01550 vs. TAIR10
Match: AT5G59180.1 (AT5G59180.1 DNA-directed RNA polymerase II)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-15
Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 1 

Query: 30  KGLMLQRSIIIRLLDEFATKKATKDL--------GYFLAVTTLENIGEGKVRQ-TGDVLF 89
           + + L      R L E    K  KD+        G+ +A+T ++ IG+G +R  TG V F
Sbjct: 9   RNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTF 68

Query: 90  PVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPLF- 149
           PV +  + F+ ++GEILE VV  V K G F   GPV+     +L   D  +  G+ P + 
Sbjct: 69  PVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYT 128

Query: 150 MNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
            +D   KI+K+  VR  +IGT+ ++A   F  + +++ D+LG ++
Sbjct: 129 TSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171

[Close]
BLAST of Cp4.1LG12g01550 vs. NCBI nr
Match: gi|449465372|ref|XP_004150402.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7 [Cucumis sativus])

HSP 1 Score: 352.1 bits (902), Expect = 6.1e-94
Identity = 173/175 (98.86%), Postives = 175/175 (100.00%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 70  GKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 129
           GKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY
Sbjct: 61  GKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120

Query: 130 RYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           RYVPGENP+F+NDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175

[Close]
BLAST of Cp4.1LG12g01550 vs. NCBI nr
Match: gi|659130473|ref|XP_008465191.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7 [Cucumis melo])

HSP 1 Score: 350.1 bits (897), Expect = 2.3e-93
Identity = 172/175 (98.29%), Postives = 174/175 (99.43%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 70  GKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 129
           GKVRQTGDVLFPV FSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY
Sbjct: 61  GKVRQTGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120

Query: 130 RYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           RYVPGENP+F+NDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175

[Close]
BLAST of Cp4.1LG12g01550 vs. NCBI nr
Match: gi|743856292|ref|XP_011029874.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica])

HSP 1 Score: 323.2 bits (827), Expect = 3.0e-85
Identity = 153/176 (86.93%), Postives = 171/176 (97.16%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MFLKVQLPWNVIIPAENLDAKGLMLQRSI++RLLD+FA K+ATKDLGY+LAV+TLE+IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKRATKDLGYYLAVSTLESIGE 60

Query: 70  GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 129
           GKVRQ TGDVLFPV+FSGITFK++RGEIL+G+VHKVLKHGV LRCGP+ENIYLS +KMPD
Sbjct: 61  GKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPD 120

Query: 130 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           YRYVPGENP+F+NDK SKIEKDVVVRF+V+GTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176

[Close]
BLAST of Cp4.1LG12g01550 vs. NCBI nr
Match: gi|224102153|ref|XP_002312568.1| (RNA polymerase Rpb7 N-terminal domain-containing family protein [Populus trichocarpa])

HSP 1 Score: 321.6 bits (823), Expect = 8.8e-85
Identity = 153/176 (86.93%), Postives = 170/176 (96.59%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MFLKVQLPWNVIIPAENLDAKGLMLQRSI++RLLD+FA K ATKDLGY+LAV+TLE+IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGE 60

Query: 70  GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 129
           GKVRQ TGDVLFPV+FSGITFK++RGEIL+G+VHKVLKHGV LRCGP+ENIYLS +KMPD
Sbjct: 61  GKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPD 120

Query: 130 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           YRYVPGENP+F+NDK SKIEKDVVVRF+V+GTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176

[Close]
BLAST of Cp4.1LG12g01550 vs. NCBI nr
Match: gi|1009140752|ref|XP_015887822.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Ziziphus jujuba])

HSP 1 Score: 321.6 bits (823), Expect = 8.8e-85
Identity = 153/176 (86.93%), Postives = 170/176 (96.59%), Query Frame = 1 

Query: 10  MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 69
           MFLKVQLPWNV+IPAENLDAKGLMLQ++I+IRL+DEFATKKATKDLGYFLAVTTL+ +GE
Sbjct: 1   MFLKVQLPWNVVIPAENLDAKGLMLQKAIVIRLMDEFATKKATKDLGYFLAVTTLDKVGE 60

Query: 70  GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 129
           GKVRQ TGDV+FPV+FSGITFKLYRGEILEGVVHKVLKHGV LRCGPVENIYLS LKMPD
Sbjct: 61  GKVRQNTGDVMFPVVFSGITFKLYRGEILEGVVHKVLKHGVLLRCGPVENIYLSSLKMPD 120

Query: 130 YRYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 185
           Y+++PGENP F+NDK SKIEKDVVVRFIVIGTKWLEA+REFQALVSL+GDYLGP++
Sbjct: 121 YQHMPGENPFFLNDKSSKIEKDVVVRFIVIGTKWLEADREFQALVSLDGDYLGPIA 176

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g01550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NRPE7_ARATH5.2e-7772.73DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana GN=NRPE7 PE=1 SV... [more]
NRPD7_ARATH4.8e-5960.92DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana GN=NRPD7 PE=1 S... [more]
RPB7L_ARATH3.0e-2438.34DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana GN=NR... [more]
RPB7_SOYBN1.9e-1538.17DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1[more]
NRPB7_ARATH8.1e-1432.12DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 S... [more]
BLAST of Cp4.1LG12g01550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKQ1_CUCSA4.2e-9498.86Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193330 PE=4 SV=1[more]
B9HKE3_POPTR6.1e-8586.93RNA polymerase Rpb7 N-terminal domain-containing family protein OS=Populus trich... [more]
B9S9D8_RICCO2.3e-8487.50DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative OS=Ricinus commu... [more]
A0A061FY25_THECC4.4e-8385.80RNA polymerase Rpb7-like, N-terminal domain OS=Theobroma cacao GN=TCM_044847 PE=... [more]
A0A067KVA5_JATCU4.4e-8385.80Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10526 PE=4 SV=1[more]
BLAST of Cp4.1LG12g01550 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14660.12.9e-7872.73 RNA polymerase Rpb7-like, N-terminal domain[more]
AT3G22900.12.7e-6060.92 RNA polymerase Rpb7-like, N-terminal domain[more]
AT4G14520.11.7e-2538.34 DNA-directed RNA polymerase II-related[more]
AT5G59180.14.6e-1532.12 DNA-directed RNA polymerase II[more]
BLAST of Cp4.1LG12g01550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465372|ref|XP_004150402.1|6.1e-9498.86PREDICTED: DNA-directed RNA polymerase V subunit 7 [Cucumis sativus][more]
gi|659130473|ref|XP_008465191.1|2.3e-9398.29PREDICTED: DNA-directed RNA polymerase V subunit 7 [Cucumis melo][more]
gi|743856292|ref|XP_011029874.1|3.0e-8586.93PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica][more]
gi|224102153|ref|XP_002312568.1|8.8e-8586.93RNA polymerase Rpb7 N-terminal domain-containing family protein [Populus trichoc... [more]
gi|1009140752|ref|XP_015887822.1|8.8e-8586.93PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR005576RNA_pol_Rpb7_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g01550.1Cp4.1LG12g01550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005576RNA polymerase Rpb7, N-terminalGENE3DG3DSA:3.30.1490.120coord: 10..90
score: 1.0
IPR005576RNA polymerase Rpb7, N-terminalunknownSSF88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 10..89
score: 2.49
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 95..183
score: 1.6
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 93..182
score: 1.13
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 11..184
score: 1.3E
NoneNo IPR availablePANTHERPTHR12709:SF3DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 7-RELATEDcoord: 11..184
score: 1.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g01550Cucsa.254900Cucumber (Gy14) v1cgycpeB0672
Cp4.1LG12g01550Cucsa.383860Cucumber (Gy14) v1cgycpeB1007
Cp4.1LG12g01550CmaCh06G013410Cucurbita maxima (Rimu)cmacpeB810
Cp4.1LG12g01550CmaCh14G017770Cucurbita maxima (Rimu)cmacpeB259
Cp4.1LG12g01550CmaCh17G001800Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g01550CmoCh17G001770Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g01550CmoCh14G018140Cucurbita moschata (Rifu)cmocpeB223
Cp4.1LG12g01550CmoCh06G013530Cucurbita moschata (Rifu)cmocpeB765
Cp4.1LG12g01550Cla007558Watermelon (97103) v1cpewmB161
Cp4.1LG12g01550Cla021567Watermelon (97103) v1cpewmB151
Cp4.1LG12g01550Csa2G193330Cucumber (Chinese Long) v2cpecuB127
Cp4.1LG12g01550Csa3G143540Cucumber (Chinese Long) v2cpecuB133
Cp4.1LG12g01550MELO3C006473Melon (DHL92) v3.5.1cpemeB142
Cp4.1LG12g01550MELO3C026776Melon (DHL92) v3.5.1cpemeB137
Cp4.1LG12g01550ClCG05G004640Watermelon (Charleston Gray)cpewcgB138
Cp4.1LG12g01550CSPI03G12500Wild cucumber (PI 183967)cpecpiB134
Cp4.1LG12g01550CSPI02G10660Wild cucumber (PI 183967)cpecpiB126
Cp4.1LG12g01550Lsi05G016680Bottle gourd (USVL1VR-Ls)cpelsiB121
Cp4.1LG12g01550Lsi09G012640Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g01550MELO3C026776.2Melon (DHL92) v3.6.1cpemedB166
Cp4.1LG12g01550MELO3C006473.2Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g01550CsaV3_3G012620Cucumber (Chinese Long) v3cpecucB0153
Cp4.1LG12g01550CsaV3_2G013070Cucumber (Chinese Long) v3cpecucB0145
Cp4.1LG12g01550Bhi12G001476Wax gourdcpewgoB0172
Cp4.1LG12g01550CsGy3G012640Cucumber (Gy14) v2cgybcpeB302
Cp4.1LG12g01550Carg06194Silver-seed gourdcarcpeB1328
Cp4.1LG12g01550Carg16589Silver-seed gourdcarcpeB0331
Cp4.1LG12g01550Carg10069Silver-seed gourdcarcpeB0322
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g01550Cp4.1LG03g10250Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g01550Cp4.1LG08g03740Cucurbita pepo (Zucchini)cpecpeB194
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g01550Cucumber (Gy14) v2cgybcpeB175
Cp4.1LG12g01550Silver-seed gourdcarcpeB1087
Cp4.1LG12g01550Silver-seed gourdcarcpeB1501
Cp4.1LG12g01550Cucumber (Chinese Long) v3cpecucB0152
Cp4.1LG12g01550Wax gourdcpewgoB0189
Cp4.1LG12g01550Cucurbita pepo (Zucchini)cpecpeB169
Cp4.1LG12g01550Cucurbita pepo (Zucchini)cpecpeB189
Cp4.1LG12g01550Cucurbita maxima (Rimu)cmacpeB519
Cp4.1LG12g01550Cucurbita maxima (Rimu)cmacpeB600
Cp4.1LG12g01550Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g01550Cucurbita moschata (Rifu)cmocpeB549
Cp4.1LG12g01550Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g01550Watermelon (Charleston Gray)cpewcgB144