Carg01920 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01920
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
Location	Cucurbita_argyrosperma_scaffold_003 : 1161176 .. 1161795 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGACAACAGAGACATTGTTCCTACAAACCCTCAACTGACCTGGTCCTGGTCCTGGTCAAGAAATCTCAATAAATTAGGGGACAACCAACAACAAACTTCACCACTGCCACCTCGGAAACCTAACCTCGTCACTCTTCCGGGATCGGAAGTGCCTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGCAAGTTTTCGCATCCGGCAATCCGGTGGCCGGTATGATTCCTTCTCCATTTTCTTGATGTCCCTAAACAACCTTAAAAATTCAAATATATTTAAATATTTTTTAATAAATAGTATTACTAGAGAGGTTCATTTAATCCATGATACAGGTCAAGAAATATTCGTTTAAATAGAGAAAGCCTTCATCTAATTCTTTACATGAGGGTTAGTAATGGGCTGTTGGGTAGCTAATTTATTTATCCAGCTGATGTGGGCCAATCACCTGCTGCCACGTGGTAAGATATTTAATTATTATAAAAAGGAAAAACAATTATTTTGATGTATTTCATTTCATGTCTTTTCAGTTATATGCTTTGGGAGGATTCCTTATTGCGAGGTGGGCTTTGAAAAAATGGAAATCTGGGGAGGACGAAGGCAAAAACTAA

mRNA sequence

ATGGTTGACAACAGAGACATTGTTCCTACAAACCCTCAACTGACCTGGTCCTGGTCCTGGTCAAGAAATCTCAATAAATTAGGGGACAACCAACAACAAACTTCACCACTGCCACCTCGGAAACCTAACCTCGTCACTCTTCCGGGATCGGAAGTGCCTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGCAAGTTTTCGCATCCGGCAATCCGGTGGCCGTTATATGCTTTGGGAGGATTCCTTATTGCGAGGTGGGCTTTGAAAAAATGGAAATCTGGGGAGGACGAAGGCAAAAACTAA

Coding sequence (CDS)

ATGGTTGACAACAGAGACATTGTTCCTACAAACCCTCAACTGACCTGGTCCTGGTCCTGGTCAAGAAATCTCAATAAATTAGGGGACAACCAACAACAAACTTCACCACTGCCACCTCGGAAACCTAACCTCGTCACTCTTCCGGGATCGGAAGTGCCTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGCAAGTTTTCGCATCCGGCAATCCGGTGGCCGTTATATGCTTTGGGAGGATTCCTTATTGCGAGGTGGGCTTTGAAAAAATGGAAATCTGGGGAGGACGAAGGCAAAAACTAA

Protein sequence

MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTAECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGKN

Homology

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BLAST of Carg01920 vs. NCBI nr
Match: XP_022957161.1 (uncharacterized protein LOC111458630 [Cucurbita moschata])

HSP 1 Score: 202.2 bits (513), Expect = 8.4e-49
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MVDNRDIVPTNPQLTWSXXXXXNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTA 60
           MVDNRDIVPTNPQLTWSXXXXXNLNKLGDN+QQTSPLPPRKPNLVTLPGSEV PPPPLTA
Sbjct: 17  MVDNRDIVPTNPQLTWSXXXXXNLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTA 76

Query: 61  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGKN 103
           ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGKN
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGKN 118

[Close]

BLAST of Carg01920 vs. NCBI nr
Match: XP_023553666.1 (uncharacterized protein LOC111811149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 92/102 (90.20%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MVDNRDIVPTNPQLTWSXXXXXNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTA 60
           MVDNRDIVPT+P++TWS     NLNKLGDNQQQTSPLPP+KPNLVTLPGS+VPPPPPLTA
Sbjct: 17  MVDNRDIVPTDPKVTWS--WSRNLNKLGDNQQQTSPLPPQKPNLVTLPGSQVPPPPPLTA 76

Query: 61  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGKN 103
           ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGKN
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGKN 116

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BLAST of Carg01920 vs. NCBI nr
Match: XP_022985696.1 (uncharacterized protein LOC111483672 [Cucurbita maxima])

HSP 1 Score: 165.2 bits (417), Expect = 1.1e-37
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   MVDNRDIVPTNPQLTWSXXXXXNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTA 60
           MV+ RDIVPTNP++ W      N +K GDN+++ SP+PP+KPN+VTLPGSEV PPPPL A
Sbjct: 1   MVEYRDIVPTNPKVAW--FWPRNRDKSGDNEEEPSPMPPQKPNVVTLPGSEVAPPPPLAA 60

Query: 61  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGKN 103
           ECKRPGKFSHPAIRW LYALGGF+IARWALK+WKSGEDEGKN
Sbjct: 61  ECKRPGKFSHPAIRWSLYALGGFIIARWALKRWKSGEDEGKN 100

[Close]

BLAST of Carg01920 vs. NCBI nr
Match: XP_022139262.1 (uncharacterized protein LOC111010218 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 3.9e-14
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 26  KLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTAECKRPGKFSHPAIRWPLYALGGFLI 85
           KLGD  +  S     KPN+V +P  +V  PPPLTAE K P KFSHPAIRWPLY+LGG+LI
Sbjct: 20  KLGDQVEGIS--GSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAIRWPLYSLGGYLI 79

Query: 86  ARWALKKWK----SGEDEGK 102
            RWA  +WK     G+D+GK
Sbjct: 80  LRWAWTRWKESQSDGDDKGK 97

[Close]

BLAST of Carg01920 vs. NCBI nr
Match: XP_011655848.1 (PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus] >KGN52215.1 hypothetical protein Csa_5G616350 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 1   MVDNRDIVPTNPQL-TWSXXXXXNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLT 60
           M +N + +  NP+L ++       LN + D +++   LP  K  +VT+P  EV PPPP+ 
Sbjct: 1   MAENEENIMRNPKLPSFVRNNRQKLNNV-DQKKEEINLPETKSEVVTIPAPEVVPPPPIK 60

Query: 61  AECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 102
           AE K  GKFSHPAI W L ALGGF I ++A KKWK  +DE K
Sbjct: 61  AEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETK 101

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BLAST of Carg01920 vs. TrEMBL
Match: tr|A0A0A0KRF3|A0A0A0KRF3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.9e-14
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 1   MVDNRDIVPTNPQL-TWSXXXXXNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLT 60
           M +N + +  NP+L ++       LN + D +++   LP  K  +VT+P  EV PPPP+ 
Sbjct: 1   MAENEENIMRNPKLPSFVRNNRQKLNNV-DQKKEEINLPETKSEVVTIPAPEVVPPPPIK 60

Query: 61  AECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 102
           AE K  GKFSHPAI W L ALGGF I ++A KKWK  +DE K
Sbjct: 61  AEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETK 101

[Close]

BLAST of Carg01920 vs. TrEMBL
Match: tr|A0A1S3BGK5|A0A1S3BGK5_CUCME (uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 1   MVDNRDIVPTNPQLTWSXXXXXNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTA 60
           M +N++ +  NP+L        N                 KP++VT+P S V  PPP+ A
Sbjct: 1   MAENKEHIIQNPKL--PSFVLNNXXXXXXXXXXXXXXXXEKPDVVTIPASGVVSPPPVKA 60

Query: 61  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 102
           E K PGKFSHPA+ WPL ALGGFLI  WA +KW+  +DE K
Sbjct: 61  EFKFPGKFSHPAVLWPLSALGGFLIIWWAWQKWRPDDDETK 99

[Close]

BLAST of Carg01920 vs. TrEMBL
Match: tr|A0A2P5A8X0|A0A2P5A8X0_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_355680 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-07
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 41  KPNLVTLPGSEVPPPPPLTAECKRPGKFSHPAIRWPLYALGGFLIARWALKKWK 95
           KP +V  P ++V  PPP+  E +  GK S+P I W +YALGGFL+ RW L +WK
Sbjct: 65  KPGMVRFPKAQVVVPPPVAVENEETGKTSNPVILWQVYALGGFLVLRWILARWK 118

[Close]

BLAST of Carg01920 vs. TrEMBL
Match: tr|A0A2P5CI17|A0A2P5CI17_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_151200 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-07
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 41  KPNLVTLPGSEVPPPPPLTAECKRPGKFSHPAIRWPLYALGGFLIARWALKKWK 95
           KP +V  P ++V  PPP+  E +  GK S+P I W +YALGGFL+ RW L +WK
Sbjct: 65  KPGMVRFPKAQVVVPPPVAVENEETGKTSNPVILWQVYALGGFLVLRWILARWK 118

[Close]

BLAST of Carg01920 vs. TrEMBL
Match: tr|M5X109|M5X109_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G091100 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-04
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 40  RKPNLVTLPGSEVPPPPPLTAECKRPG-KFSHPAIRWPLYALGGFLIARWALKKWKSGED 99
           +KP+ V  P +++  PPP+  E + P  K S+P I W +YA+GGFL+ RW   +W    D
Sbjct: 63  QKPDTVRFPKAQLVVPPPVAVENEEPSTKTSNPIILWQVYAIGGFLVLRWIWARWNERRD 122

The following BLAST results are available for this feature:

BLAST of Carg01920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957161.1	8.4e-49	98.04	uncharacterized protein LOC111458630 [Cucurbita moschata]	[more]
XP_023553666.1	1.3e-46	90.20	uncharacterized protein LOC111811149 [Cucurbita pepo subsp. pepo]	[more]
XP_022985696.1	1.1e-37	74.51	uncharacterized protein LOC111483672 [Cucurbita maxima]	[more]
XP_022139262.1	3.9e-14	57.50	uncharacterized protein LOC111010218 [Momordica charantia]	[more]
XP_011655848.1	1.5e-13	46.08	PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus] >KGN52215.1 hy...	[more]

BLAST of Carg01920 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg01920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRF3\|A0A0A0KRF3_CUCSA	9.9e-14	46.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1	[more]
tr\|A0A1S3BGK5\|A0A1S3BGK5_CUCME	1.4e-12	43.56	uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=...	[more]
tr\|A0A2P5A8X0\|A0A2P5A8X0_9ROSA	5.2e-07	50.00	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_355680 PE=4 S...	[more]
tr\|A0A2P5CI17\|A0A2P5CI17_PARAD	5.2e-07	50.00	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_151200 PE...	[more]
tr\|M5X109\|M5X109_PRUPE	2.4e-04	40.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G091100 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01920-RA	Carg01920-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..40

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01920	Cla020514	Watermelon (97103) v1	carwmB0842
Carg01920	Csa5G616350	Cucumber (Chinese Long) v2	carcuB0857
Carg01920	MELO3C012374	Melon (DHL92) v3.5.1	carmeB0834
Carg01920	ClCG05G021520	Watermelon (Charleston Gray)	carwcgB0816
Carg01920	CSPI05G26590	Wild cucumber (PI 183967)	carcpiB0877
Carg01920	Cucsa.308900	Cucumber (Gy14) v1	carcgyB0969
Carg01920	CmaCh04G014090	Cucurbita maxima (Rimu)	carcmaB1170
Carg01920	CmoCh04G014830	Cucurbita moschata (Rifu)	carcmoB1138
Carg01920	Cp4.1LG01g14430	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01920	CsGy5G026030	Cucumber (Gy14) v2	carcgybB0831
Carg01920	MELO3C012374.2	Melon (DHL92) v3.6.1	carmedB0846
Carg01920	CsaV3_5G035720	Cucumber (Chinese Long) v3	carcucB0881
Carg01920	Cla97C05G103230	Watermelon (97103) v2	carwmbB0878
Carg01920	Bhi07G000669	Wax gourd	carwgoB0979

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01920	Wax gourd	carwgoB0977
Carg01920	Silver-seed gourd	carcarB472
Carg01920	Silver-seed gourd	carcarB578
Carg01920	Cucurbita maxima (Rimu)	carcmaB1168
Carg01920	Cucurbita maxima (Rimu)	carcmaB1167
Carg01920	Cucurbita moschata (Rifu)	carcmoB1135
Carg01920	Cucurbita moschata (Rifu)	carcmoB1136
Carg01920	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01920	Cucurbita pepo (Zucchini)	carcpeB1176
Carg01920	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01920	Bottle gourd (USVL1VR-Ls)	carlsiB769
Carg01920	Watermelon (Charleston Gray)	carwcgB0819
Carg01920	Watermelon (97103) v1	carwmB0838