CmoCh04G014830 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G014830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 7595661 .. 7596424 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGTAACCCTCACCTTTCAAAACCCATGCGCCCAAATTTTCACAACTCCAAACCAAATTTCTTCTTCCCAGACATGGTTGACAACAGAGACATTGTTCCTACAAACCCTCAACTGACCTGGTCCTGGTCCTGGTCAAGAAATCTCAATAAATTAGGGGACAACGAACAACAAACTTCACCACTGCCACCTCGGAAACCTAACCTCGTCACTCTTCCGGGATCGGAAGTGGCTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGCAAGTTTTCGCATCCGGCAATCCGGTGGCCGGTATGATTCCTTCTCCATTTTCTTGATGTCCCTAAACAACCTTAAGAATTCAAATATATTTAAATATTTTTTAATAAATAGTGTTACTAGAGAGGTTCATTTAATCCATGATACAGGTCAAGAAATATTCGTTTAAATAGAGAAAGCCTTCATCTAATTCTTTACATGAGGGTTAGTAATGGGCTGTTGGGTAGCTAATTTATTTATCCAGCTGACGTGGGCCAATCACCTGCTGCCACGTGGTAAGATATTTAATTATTATAAAAAGGAAAAAACAATTATTTTGATGTATTTCATTTCATGTCTTTTCAGTTATATGCTTTGGGAGGATTCCTTATTGCGAGGTGGGCTTTGAAAAAATGGAAATCTGGGGAGGACGAAGGCAAAAACTAATATTAAAAACCATATTTTCGGCGCCCAAGAAGTAGCCTTCGAAATGCTGTGTGAGCCAAGGAATTAGGC

mRNA sequence

ACAGTAACCCTCACCTTTCAAAACCCATGCGCCCAAATTTTCACAACTCCAAACCAAATTTCTTCTTCCCAGACATGGTTGACAACAGAGACATTGTTCCTACAAACCCTCAACTGACCTGGTCCTGGTCCTGGTCAAGAAATCTCAATAAATTAGGGGACAACGAACAACAAACTTCACCACTGCCACCTCGGAAACCTAACCTCGTCACTCTTCCGGGATCGGAAGTGGCTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGCAAGTTTTCGCATCCGGCAATCCGGTGGCCGTTATATGCTTTGGGAGGATTCCTTATTGCGAGGTGGGCTTTGAAAAAATGGAAATCTGGGGAGGACGAAGGCAAAAACTAATATTAAAAACCATATTTTCGGCGCCCAAGAAGTAGCCTTCGAAATGCTGTGTGAGCCAAGGAATTAGGC

Coding sequence (CDS)

ATGCGCCCAAATTTTCACAACTCCAAACCAAATTTCTTCTTCCCAGACATGGTTGACAACAGAGACATTGTTCCTACAAACCCTCAACTGACCTGGTCCTGGTCCTGGTCAAGAAATCTCAATAAATTAGGGGACAACGAACAACAAACTTCACCACTGCCACCTCGGAAACCTAACCTCGTCACTCTTCCGGGATCGGAAGTGGCTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGCAAGTTTTCGCATCCGGCAATCCGGTGGCCGTTATATGCTTTGGGAGGATTCCTTATTGCGAGGTGGGCTTTGAAAAAATGGAAATCTGGGGAGGACGAAGGCAAAAACTAA

Homology

[Close]

BLAST of CmoCh04G014830 vs. TrEMBL
Match: A0A0A0KRF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.6e-15
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 1


Query: 17  MVDNRDIVPTNPQLTWSWSWSRN----LNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPP 76
           M +N + +  NP+L    S+ RN    LN + D +++   LP  K  +VT+P  EV PPP
Sbjct: 1   MAENEENIMRNPKLP---SFVRNNRQKLNNV-DQKKEEINLPETKSEVVTIPAPEVVPPP 60

Query: 77  PLTAECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 118
           P+ AE K  GKFSHPAI W L ALGGF I ++A KKWK  +DE K
Sbjct: 61  PIKAEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETK 101

[Close]

BLAST of CmoCh04G014830 vs. NCBI nr
Match: gi|659091896|ref|XP_008446792.1| (PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTA 76
           M +N++ +  NP+L  S+  + N  K+ D +++ +  PP KP++VT+P S V  PPP+ A
Sbjct: 1   MAENKEHIIQNPKLP-SFVLNNNRQKVVDQKKEETN-PPEKPDVVTIPASGVVSPPPVKA 60

Query: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 118
           E K PGKFSHPA+ WPL ALGGFLI  WA +KW+  +DE K
Sbjct: 61  EFKFPGKFSHPAVLWPLSALGGFLIIWWAWQKWRPDDDETK 99

[Close]

BLAST of CmoCh04G014830 vs. NCBI nr
Match: gi|778706419|ref|XP_011655848.1| (PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 8.0e-15
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 1


Query: 17  MVDNRDIVPTNPQLTWSWSWSRN----LNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPP 76
           M +N + +  NP+L    S+ RN    LN + D +++   LP  K  +VT+P  EV PPP
Sbjct: 1   MAENEENIMRNPKLP---SFVRNNRQKLNNV-DQKKEEINLPETKSEVVTIPAPEVVPPP 60

Query: 77  PLTAECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 118
           P+ AE K  GKFSHPAI W L ALGGF I ++A KKWK  +DE K
Sbjct: 61  PIKAEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETK 101

[Close]

BLAST of CmoCh04G014830 vs. NCBI nr
Match: gi|1009119513|ref|XP_015876421.1| (PREDICTED: uncharacterized protein LOC107413075 [Ziziphus jujuba])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1


Query: 45  DNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTAECKRPGKFSHPAIRWPLYALGGFLIARW 104
           D+E+  S    +KP++V  P +++  PPP+  E +  GK S+P I W +YALGGFL+ RW
Sbjct: 56  DDERNQSET--QKPDMVKFPKAQLVAPPPVAVESEEHGKTSNPVILWQVYALGGFLVLRW 115

Query: 105 ALKKWKSGED 115
              +W   ++
Sbjct: 116 IWARWNERKE 123

The following BLAST results are available for this feature:

BLAST of CmoCh04G014830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G014830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRF3_CUCSA	5.6e-15	47.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616350 PE=4 SV=1	[more]

BLAST of CmoCh04G014830 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G014830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091896\|ref\|XP_008446792.1\|	1.7e-17	48.51	PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo]	[more]
gi\|778706419\|ref\|XP_011655848.1\|	8.0e-15	47.62	PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus]	[more]
gi\|1009119513\|ref\|XP_015876421.1\|	1.1e-06	38.57	PREDICTED: uncharacterized protein LOC107413075 [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G014830.1	CmoCh04G014830.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G014830	CmaCh04G014090	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G014830	Cla020514	Watermelon (97103) v1	cmowmB693
CmoCh04G014830	MELO3C012374	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G014830	ClCG05G021520	Watermelon (Charleston Gray)	cmowcgB654
CmoCh04G014830	Cp4.1LG01g14430	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G014830	MELO3C012374.2	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G014830	CsaV3_5G035720	Cucumber (Chinese Long) v3	cmocucB0874
CmoCh04G014830	Cla97C05G103230	Watermelon (97103) v2	cmowmbB729
CmoCh04G014830	Bhi07G000669	Wax gourd	cmowgoB0904
CmoCh04G014830	CsGy5G026030	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G014830	Carg01920	Silver-seed gourd	carcmoB1138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G014830	Wax gourd	cmowgoB0869
CmoCh04G014830	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G014830	Cucurbita moschata (Rifu)	cmocmoB468
CmoCh04G014830	Cucumber (Gy14) v1	cgycmoB0848
CmoCh04G014830	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G014830	Cucurbita maxima (Rimu)	cmacmoB739
CmoCh04G014830	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G014830	Cucumber (Chinese Long) v2	cmocuB738
CmoCh04G014830	Watermelon (Charleston Gray)	cmowcgB681
CmoCh04G014830	Watermelon (97103) v1	cmowmB662
CmoCh04G014830	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G014830	Cucurbita pepo (Zucchini)	cmocpeB687
CmoCh04G014830	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G014830	Bottle gourd (USVL1VR-Ls)	cmolsiB700
CmoCh04G014830	Silver-seed gourd	carcmoB0655
CmoCh04G014830	Silver-seed gourd	carcmoB0939