ClCG05G021520 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G021520
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 33557411 .. 33559103 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAGAACAGAGAATTTATTAACAGAAACCCTAAATCGGCGAAGTCGTCTTTGCTAAAAAATTGGCAGAAATTAGGGGAGAATAACGAAGAAACTCCACCTCAGAAGCCAAACGTCGTCACTGTTCCGGTACCGGAAGCTGTTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGGAAGTTTTCACATCCGACAATCCGGTGGCCGGTATGTTTCGTTCTCTGGATTTTATTGGTGTGTTTATTTATAATTTGGACAAATTACAAAAAAATCACCTTGAAATATGGTGGTAGTTGTCATTAGACCAATTTTCAATTTTAAAGACTAAACCCCGGTAACTATATAAATGTTGAAATTATTCAAATTCTACATCCAAATTTATAAAGTTGTATAAATTATAACATTTATATAAATTTAAAAGTTCAATTTTTATTATTTGTAGGTCCAATTTCTACAATTATTATAAGTTTGAAGGTCTAATTTTAACACTTATAGAAGTTGTATAAATTATAACATTTATACCGATTTATAAAGTTAAAAATTTGAGAGTCTAATTGCAACTTCTAGCGTACTTCAAAGGTGTCTTTTTGCAATTTGCCTTTATATTTTAGTTACATGTGTCAATGATTTATTAAATACAACTTGTAAATATACGTAGTCAAATTCTTAAAAGAATTTTTTTTTTTCAGTTTTTAGGAGCTTGGTAATATTTATTTTTTGGTTTTTGGTTTTTTTTTTAAAAATTAAAGGTTATAAACACTCTTTATAACTTTTTTTTTTATCTACTTTTAGTTTTTATCAATATTTTAAAAAACCAAACCAGGTATGTTTTGAAAACTAAAAAAGAAGAGTTCACATTTTTGTTTTTGTTTTAGAGATTTGGCAAAAGTTAAACTCTTACCTAAAAAGATGTAAAACTTTATAAGAAATTAGGATGAAATAGATTTAATTTTTAAAAATCAAACAATTACCAAACAAGGCCTAAAATATTTTTGTAATATGGGTACATAGTAGACAATAGAATAATTTATGTTAAATATAATTTCAGTTTTTTACTTTCAAATATTCAATTTTAGTCTTTTTATACTTTCAATAAATCTAAAATTCAGTCATTTGAATCTAATTTTTGTCAAAAATTAAAGGTTAAATAATAATTTTTATATAAAAAAAATATGTGAATATATTTTTAAAATTTATTGTAAAAATGCTAATGGTTAATTAAAAAATTTTGAAAAAATTAACCCAAAAAAAAAAAAAACAGATCACTAATAATGAACTAAATTTAACATTTATAGGAATTAAAATTTAACATTTAAAAGTATAAGGGTAAAAATGGTATTTTTACCTGTAATAAATAAAGTCAAATGGTTTAATTTTTAAGATGCTTCTTAGTCGAACTTCGAAGCTTTAGTTTTACCCCCTCCTCATGTTTGGAGATCTTAATTAGAATAATACCAAGATGTTACGCTAGTCATTTTTTGCAATCCATCTATATGTGACCCAATAACATGACACCATGTGGCATGATGTTTTCTTTTTTATTAAAACTTTTAATTGCTCGGGTTTTGGACTGCGTAGCTAGAGATGTTCACATGACAAAACGGTTTCTTAGTCCCCGTCACTGCCCGCCATTTGTTCCCCATCCCCGTTTAATTACGTGGAGTTTAGGGCGAAAAATCTCTGA

mRNA sequence

ATGGTTGAGAACAGAGAATTTATTAACAGAAACCCTAAATCGGCGAAGTCGTCTTTGCTAAAAAATTGGCAGAAATTAGGGGAGAATAACGAAGAAACTCCACCTCAGAAGCCAAACGTCGTCACTGTTCCGGTACCGGAAGCTGTTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGGAAGTTTTCACATCCGACAATCCGGTGGCCGTCCCCGTCACTGCCCGCCATTTGTTCCCCATCCCCGTTTAATTACGTGGAGTTTAGGGCGAAAAATCTCTGA

Coding sequence (CDS)

ATGGTTGAGAACAGAGAATTTATTAACAGAAACCCTAAATCGGCGAAGTCGTCTTTGCTAAAAAATTGGCAGAAATTAGGGGAGAATAACGAAGAAACTCCACCTCAGAAGCCAAACGTCGTCACTGTTCCGGTACCGGAAGCTGTTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGGAAGTTTTCACATCCGACAATCCGGTGGCCGTCCCCGTCACTGCCCGCCATTTGTTCCCCATCCCCGTTTAATTACGTGGAGTTTAGGGCGAAAAATCTCTGA

Protein sequence

MVENREFINRNPKSAKSSLLKNWQKLGENNEETPPQKPNVVTVPVPEAVPPPPLTAECKRPGKFSHPTIRWPSPSLPAICSPSPFNYVEFRAKNL
Homology
[Close]
BLAST of ClCG05G021520 vs. TrEMBL
Match: A0A0A0KRF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 42/98 (42.86%), Postives = 53/98 (54.08%), Query Frame = 1 

Query: 1  MVENREFINRNPKSAKSSLLKNWQKLGENNEET-----PPQKPNVVTVPVPEAVPPPPLT 60
          M EN E I RNPK   S +  N QKL   +++      P  K  VVT+P PE VPPPP+ 
Sbjct: 1  MAENEENIMRNPK-LPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIK 60

Query: 61 AECKRPGKFSHPTIRWPSPSLPAICSPSPFNYVEFRAK 94
          AE K  GKFSHP I W      ++C+   F  ++F  K
Sbjct: 61 AEIKHHGKFSHPAIVW------SLCALGGFFIIKFAWK 91

[Close]
BLAST of ClCG05G021520 vs. NCBI nr
Match: gi|659091896|ref|XP_008446792.1| (PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 1  MVENREFINRNPKSAKSSLLKNWQKLGENNEE--TPPQKPNVVTVPVPEAVPPPPLTAEC 60
          M EN+E I +NPK     L  N QK+ +  +E   PP+KP+VVT+P    V PPP+ AE 
Sbjct: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60

Query: 61 KRPGKFSHPTIRWPSPSL 77
          K PGKFSHP + WP  +L
Sbjct: 61 KFPGKFSHPAVLWPLSAL 78

[Close]
BLAST of ClCG05G021520 vs. NCBI nr
Match: gi|778706419|ref|XP_011655848.1| (PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 42/98 (42.86%), Postives = 53/98 (54.08%), Query Frame = 1 

Query: 1  MVENREFINRNPKSAKSSLLKNWQKLGENNEET-----PPQKPNVVTVPVPEAVPPPPLT 60
          M EN E I RNPK   S +  N QKL   +++      P  K  VVT+P PE VPPPP+ 
Sbjct: 1  MAENEENIMRNPK-LPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIK 60

Query: 61 AECKRPGKFSHPTIRWPSPSLPAICSPSPFNYVEFRAK 94
          AE K  GKFSHP I W      ++C+   F  ++F  K
Sbjct: 61 AEIKHHGKFSHPAIVW------SLCALGGFFIIKFAWK 91

The following BLAST results are available for this feature:
BLAST of ClCG05G021520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRF3_CUCSA1.3e-0942.86Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616350 PE=4 SV=1[more]
BLAST of ClCG05G021520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091896|ref|XP_008446792.1|1.9e-1148.72PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo][more]
gi|778706419|ref|XP_011655848.1|1.8e-0942.86PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G021520.1ClCG05G021520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G021520Cla020514Watermelon (97103) v1wcgwmB285
ClCG05G021520Cla97C05G103230Watermelon (97103) v2wcgwmbB229
ClCG05G021520Bhi07G000669Wax gourdwcgwgoB469
ClCG05G021520CmoCh04G014830Cucurbita moschata (Rifu)cmowcgB654
ClCG05G021520Cp4.1LG01g14430Cucurbita pepo (Zucchini)cpewcgB388
ClCG05G021520Carg01920Silver-seed gourdcarwcgB0816
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G021520Watermelon (Charleston Gray)wcgwcgB167
ClCG05G021520Cucumber (Gy14) v1cgywcgB530
ClCG05G021520Cucumber (Gy14) v1cgywcgB662
ClCG05G021520Cucurbita maxima (Rimu)cmawcgB364
ClCG05G021520Cucurbita maxima (Rimu)cmawcgB655
ClCG05G021520Cucurbita maxima (Rimu)cmawcgB664
ClCG05G021520Cucurbita moschata (Rifu)cmowcgB358
ClCG05G021520Cucurbita moschata (Rifu)cmowcgB665
ClCG05G021520Wild cucumber (PI 183967)cpiwcgB412
ClCG05G021520Cucumber (Chinese Long) v2cuwcgB394
ClCG05G021520Melon (DHL92) v3.5.1mewcgB062
ClCG05G021520Watermelon (97103) v1wcgwmB274
ClCG05G021520Cucurbita pepo (Zucchini)cpewcgB045
ClCG05G021520Cucurbita pepo (Zucchini)cpewcgB398
ClCG05G021520Bottle gourd (USVL1VR-Ls)lsiwcgB283
ClCG05G021520Bottle gourd (USVL1VR-Ls)lsiwcgB435
ClCG05G021520Cucumber (Gy14) v2cgybwcgB136
ClCG05G021520Cucumber (Gy14) v2cgybwcgB359
ClCG05G021520Cucumber (Gy14) v2cgybwcgB434
ClCG05G021520Melon (DHL92) v3.6.1medwcgB061
ClCG05G021520Silver-seed gourdcarwcgB0467
ClCG05G021520Silver-seed gourdcarwcgB0661
ClCG05G021520Cucumber (Chinese Long) v3cucwcgB415
ClCG05G021520Wax gourdwcgwgoB460