Cp4.1LG01g14430 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g14430
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 7614921 .. 7615858 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGCGTAGCAGTGAAATTTTGAAATGGCGTATTACTTTCCATCTCAAAACACAGGAACCCTCACCTTTCAAAACCCATGCGCCCAAATTTTCACAACTCCAAACCAAATTTCTTCTTCCCAGACATGGTTGACAACAGAGACATTGTTCCTACAGACCCTAAAGTGACCTGGTCCTGGTCAAGAAATCTCAACAAATTAGGGGACAACCAACAACAAACTTCACCACTGCCACCTCAGAAACCTAACCTCGTCACTCTTCCGGGATCGCAAGTGCCTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGCAAGTTTTCGCATCCGGCAATCCGGTGGCCGGTATGATTCCTTCTCCATTTTCTTGATGTGCTTCGTTTTTTCAATTCTATTCAACTTCTAACTAAACTATTTTTTATTTATAGTCCACCACATATGGGTCCCTAAACAACCTTAAAAATTCAAATATATTTAAATATTTTTTAATAAATAGTATTATCTCATATATGGTTAGTAATGGGCTGTTGGGTAGCTAATTTATTTATCCAGCTGATGTGGGCCAATCACCTGCTGCCACGTGGTAAGATATTGAATTATTATAAAAAGGAAAAACAATTATTTTGATGTATTTCATTTCATGTCTTTTCAGTTATATGCTTTGGGAGGATTCCTTATTGCGAGGTGGGCTTTGAAAAAATGGAAATCTGGGGAGGACGAAGGCAAAAACTAATATTAAAAACCATATTTTCGGCGCCCAAGAAGTAGCCTTCGAAATGCTGTGTGAGCCGAGGAATTAGGCTTCAAATAAAATTATTTAAATTACTATGATCATTGTAATAATTACAGTAATTAAAAATTTCCAAATTGATTACAATTATGTGGAAAACACCTTCCAACTTTTGAATTAAAATAATAATAATAATAATAATAATC

mRNA sequence

AGAGCGTAGCAGTGAAATTTTGAAATGGCGTATTACTTTCCATCTCAAAACACAGGAACCCTCACCTTTCAAAACCCATGCGCCCAAATTTTCACAACTCCAAACCAAATTTCTTCTTCCCAGACATGGTTGACAACAGAGACATTGTTCCTACAGACCCTAAAGTGACCTGGTCCTGGTCAAGAAATCTCAACAAATTAGGGGACAACCAACAACAAACTTCACCACTGCCACCTCAGAAACCTAACCTCGTCACTCTTCCGGGATCGCAAGTGCCTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGCAAGTTTTCGCATCCGGCAATCCGGTGGCCGTTATATGCTTTGGGAGGATTCCTTATTGCGAGGTGGGCTTTGAAAAAATGGAAATCTGGGGAGGACGAAGGCAAAAACTAATATTAAAAACCATATTTTCGGCGCCCAAGAAGTAGCCTTCGAAATGCTGTGTGAGCCGAGGAATTAGGCTTCAAATAAAATTATTTAAATTACTATGATCATTGTAATAATTACAGTAATTAAAAATTTCCAAATTGATTACAATTATGTGGAAAACACCTTCCAACTTTTGAATTAAAATAATAATAATAATAATAATAATC

Coding sequence (CDS)

ATGCGCCCAAATTTTCACAACTCCAAACCAAATTTCTTCTTCCCAGACATGGTTGACAACAGAGACATTGTTCCTACAGACCCTAAAGTGACCTGGTCCTGGTCAAGAAATCTCAACAAATTAGGGGACAACCAACAACAAACTTCACCACTGCCACCTCAGAAACCTAACCTCGTCACTCTTCCGGGATCGCAAGTGCCTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGCAAGTTTTCGCATCCGGCAATCCGGTGGCCGTTATATGCTTTGGGAGGATTCCTTATTGCGAGGTGGGCTTTGAAAAAATGGAAATCTGGGGAGGACGAAGGCAAAAACTAA

Protein sequence

MRPNFHNSKPNFFFPDMVDNRDIVPTDPKVTWSWSRNLNKLGDNQQQTSPLPPQKPNLVTLPGSQVPPPPPLTAECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGKN
BLAST of Cp4.1LG01g14430 vs. TrEMBL
Match: A0A0A0KRF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-14
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1

Query: 17  MVDNRDIVPTDPKVTWSWSRNLNKLG--DNQQQTSPLPPQKPNLVTLPGSQVPPPPPLTA 76
           M +N + +  +PK+      N  KL   D +++   LP  K  +VT+P  +V PPPP+ A
Sbjct: 1   MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKA 60

Query: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 116
           E K  GKFSHPAI W L ALGGF I ++A KKWK  +DE K
Sbjct: 61  EIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETK 101

BLAST of Cp4.1LG01g14430 vs. NCBI nr
Match: gi|659091896|ref|XP_008446792.1| (PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16
Identity = 47/100 (47.00%), Postives = 70/100 (70.00%), Query Frame = 1

Query: 17  MVDNRDIVPTDPKV-TWSWSRNLNKLGDNQQQTSPLPPQKPNLVTLPGSQVPPPPPLTAE 76
           M +N++ +  +PK+ ++  + N  K+ D +++ +  PP+KP++VT+P S V  PPP+ AE
Sbjct: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETN-PPEKPDVVTIPASGVVSPPPVKAE 60

Query: 77  CKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 116
            K PGKFSHPA+ WPL ALGGFLI  WA +KW+  +DE K
Sbjct: 61  FKFPGKFSHPAVLWPLSALGGFLIIWWAWQKWRPDDDETK 99

BLAST of Cp4.1LG01g14430 vs. NCBI nr
Match: gi|778706419|ref|XP_011655848.1| (PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-14
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1

Query: 17  MVDNRDIVPTDPKVTWSWSRNLNKLG--DNQQQTSPLPPQKPNLVTLPGSQVPPPPPLTA 76
           M +N + +  +PK+      N  KL   D +++   LP  K  +VT+P  +V PPPP+ A
Sbjct: 1   MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKA 60

Query: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 116
           E K  GKFSHPAI W L ALGGF I ++A KKWK  +DE K
Sbjct: 61  EIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETK 101

BLAST of Cp4.1LG01g14430 vs. NCBI nr
Match: gi|1009119513|ref|XP_015876421.1| (PREDICTED: uncharacterized protein LOC107413075 [Ziziphus jujuba])

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-07
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1

Query: 44  NQQQTSPLPPQKPNLVTLPGSQVPPPPPLTAECKRPGKFSHPAIRWPLYALGGFLIARWA 103
           NQ +T     QKP++V  P +Q+  PPP+  E +  GK S+P I W +YALGGFL+ RW 
Sbjct: 60  NQSET-----QKPDMVKFPKAQLVAPPPVAVESEEHGKTSNPVILWQVYALGGFLVLRWI 119

Query: 104 LKKWKSGED 113
             +W   ++
Sbjct: 120 WARWNERKE 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KRF3_CUCSA2.7e-1445.54Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616350 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659091896|ref|XP_008446792.1|2.5e-1647.00PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo][more]
gi|778706419|ref|XP_011655848.1|3.9e-1445.54PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus][more]
gi|1009119513|ref|XP_015876421.1|6.1e-0742.03PREDICTED: uncharacterized protein LOC107413075 [Ziziphus jujuba][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g14430.1Cp4.1LG01g14430.1mRNA


The following gene(s) are paralogous to this gene:

None