Cla020514 (gene) Watermelon (97103) v1

Overview
NameCla020514
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 29177229 .. 29177575 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAGAACAGAGAATTTATTAACAGAAACCCTAAATCGGCGAAGTCGTCTTTGCTAAAAAATTGGCAGAAATTAGGGGAGAATAACGAAGAAACTCCACCTCAGAAGCCAAACGTCGTCACTGTTCCGGTACCGGAAGCTGTTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGGAAGTTTTCACATCCGACAATCCGGTGGCCGGTATGTTTCGTTCTCTGGATTTTATTGGTGTGTTTATTTATAATTTGGACAAATTACAAAAAAATCACCTTGAAATATGGTGGTAGTTGTCATTAGACCAATTTTCAATTTTAAAGACTAAACCCCGGTAA

mRNA sequence

ATGGTTGAGAACAGAGAATTTATTAACAGAAACCCTAAATCGGCGAAGTCGTCTTTGCTAAAAAATTGGCAGAAATTAGGGGAGAATAACGAAGAAACTCCACCTCAGAAGCCAAACGTCGTCACTGTTCCGGTACCGGAAGCTGTTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGGAAGTTTTCACATCCGACAATCCGGTGGCCGACTAAACCCCGGTAA

Coding sequence (CDS)

ATGGTTGAGAACAGAGAATTTATTAACAGAAACCCTAAATCGGCGAAGTCGTCTTTGCTAAAAAATTGGCAGAAATTAGGGGAGAATAACGAAGAAACTCCACCTCAGAAGCCAAACGTCGTCACTGTTCCGGTACCGGAAGCTGTTCCTCCTCCGCCGTTGACGGCTGAGTGCAAGCGCCCTGGGAAGTTTTCACATCCGACAATCCGGTGGCCGACTAAACCCCGGTAA

Protein sequence

MVENREFINRNPKSAKSSLLKNWQKLGENNEETPPQKPNVVTVPVPEAVPPPPLTAECKRPGKFSHPTIRWPTKPR
Homology
[Close]
BLAST of Cla020514 vs. TrEMBL
Match: A0A0A0KRF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-09
Identity = 38/76 (50.00%), Postives = 44/76 (57.89%), Query Frame = 1 

Query: 1  MVENREFINRNPKSAKSSLLKNWQKLGENNEET-----PPQKPNVVTVPVPEAVPPPPLT 60
          M EN E I RNPK   S +  N QKL   +++      P  K  VVT+P PE VPPPP+ 
Sbjct: 1  MAENEENIMRNPK-LPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIK 60

Query: 61 AECKRPGKFSHPTIRW 72
          AE K  GKFSHP I W
Sbjct: 61 AEIKHHGKFSHPAIVW 75

[Close]
BLAST of Cla020514 vs. NCBI nr
Match: gi|659091896|ref|XP_008446792.1| (PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 1  MVENREFINRNPKSAKSSLLKNWQKLGENNEE--TPPQKPNVVTVPVPEAVPPPPLTAEC 60
          M EN+E I +NPK     L  N QK+ +  +E   PP+KP+VVT+P    V PPP+ AE 
Sbjct: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60

Query: 61 KRPGKFSHPTIRWP 73
          K PGKFSHP + WP
Sbjct: 61 KFPGKFSHPAVLWP 74

[Close]
BLAST of Cla020514 vs. NCBI nr
Match: gi|778706419|ref|XP_011655848.1| (PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-09
Identity = 38/76 (50.00%), Postives = 44/76 (57.89%), Query Frame = 1 

Query: 1  MVENREFINRNPKSAKSSLLKNWQKLGENNEET-----PPQKPNVVTVPVPEAVPPPPLT 60
          M EN E I RNPK   S +  N QKL   +++      P  K  VVT+P PE VPPPP+ 
Sbjct: 1  MAENEENIMRNPK-LPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIK 60

Query: 61 AECKRPGKFSHPTIRW 72
          AE K  GKFSHP I W
Sbjct: 61 AEIKHHGKFSHPAIVW 75

The following BLAST results are available for this feature:
BLAST of Cla020514 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRF3_CUCSA3.0e-0950.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616350 PE=4 SV=1[more]
BLAST of Cla020514 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091896|ref|XP_008446792.1|2.7e-1150.00PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo][more]
gi|778706419|ref|XP_011655848.1|4.2e-0950.00PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020514Cla020514.1mRNA