Csa5G616350 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G616350
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 24402615 .. 24404368 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGATATTTCCACAAAGAGAACAAACTATTGTTCCGATCGGGGGCGGCGGTGGTGGCAAAGTGGAAGTCGTGATCTTACGACATGGCTGAGAACGAAGAAAATATTATGAGAAACCCTAAATTGCCAAGTTTTGTGCGAAATAATCGACAGAAATTAAATAATGTGGATCAAAAGAAAGAAGAAATTAATCTACCTGAGACGAAGTCTGAGGTAGTCACTATTCCGGCACCGGAAGTGGTTCCCCCTCCGCCGATTAAGGCTGAGATCAAGCACCATGGGAAGTTTTCACATCCGGCAATCGTGTGGTCGGTATGATTATTCCTTCTCCCATTCTCATTATATCTCTCCTTTTATGGAGAAGTTTTTTTTTTTGTCTTAGTTCTTGGTTTCTAAAACATTGCATTTTAGTTTAGTTTTGGGTTTGATTTTAATTCATACTATCACAAAAACCTTAACGTCATTTTGCCTTTGAAAACAAAAAATGTCACATTTTAAAGTTTAGAGATTAAATTAAAATCAAACTTAAAATTTTAAATCGAAAGAAATGTGATATTTAATCACATTGATAATAAACATAAAAATTAGGGACTTTTTAGCTCAATATGTCTATGACTTATTAAACACAATTTTAAGTTTAGGTTTTATAACCAAAGTGAAAATAAACTATTACTTCGTTGTAAAGTGAGATTCTATTATCATCCCAAAATGTAGGTTTTTAAATTTGGTTCATCTCGTTTGTTAATATTTTTTTTTTTTTAACTTTGTTGATTTTCATATAGTTATTTATTCTTTCGATTTGTTTAGAGATCATAAACATTTTTTATCGATTAAATAGTTAATTAATTTCTCATGCTTGTGGAGACTAGTAGTTTATACATGAATTATTGATCTTCAAAGAGAGAAACCGTGCTAATCTAGGGATTATGTGATATGTAAGATACAGATTTGTAAACCAATGTGAAGGAAAGTAAAGAAAATTTTGTTTTTTTCTTTCCTAATTTCTCATGAAAAAAAATCCTTCATCAAATATGTTTGTTTAGTACATTAATCAACCCTATATATAAGAATTCAAAAAAAAATATATGTTTGTTTGTTTCAAGTGTGTATGTGTAATAGTTTTTTTTGTTAAAAAATCAATGAAGAAAATAAATTGGTGAGAAACGAAGATGTGAATGTATTCTCCGTCTCCGTTCCCGTGAAGCTCTAGCTCGGAAAAATAGACTTATATGTACTGTAACTCCGCTGTCCATGAAGGGTTACTCATTAGAATTCTTTGTCAAACAGTTTTCGATGATCAAAATTCATGAAGTATTATTACTACCAAACAAATTGCAGTTTCAACTAACAATAATAAACAATAAAGTAATAAGTAACAATTAAGAATGCAGCTTTTCTATTGTATATATATGATTTATAAAAAGAATTAATTTTGTTTTAATGGTAATTCATTTCATCTACTTTCAGTTATGTGCTTTAGGAGGATTTTTCATCATAAAGTTTGCTTGGAAAAAATGGAAACCTAAAGACGACGAAACGAAAAAAAAATAATATCTCAACTCCATATTGGAAGCAATCCATAATTAATTTTAAGCATTTCAAATTTAATGCTCTTTGTTACTCTATATTTACTGATTTGTAATGTGATTGCTCATTTATTTATAAATTTGAGCCATGATAATAAGGCTTTTAATGATATTCTTTGATTACTATGGTTGTTGTAATAATTACTCCACTAAAGATTATTTAAGAAAA

mRNA sequence

ATGGCTGAGAACGAAGAAAATATTATGAGAAACCCTAAATTGCCAAGTTTTGTGCGAAATAATCGACAGAAATTAAATAATGTGGATCAAAAGAAAGAAGAAATTAATCTACCTGAGACGAAGTCTGAGGTAGTCACTATTCCGGCACCGGAAGTGGTTCCCCCTCCGCCGATTAAGGCTGAGATCAAGCACCATGGGAAGTTTTCACATCCGGCAATCGTGTGGTCGTTATGTGCTTTAGGAGGATTTTTCATCATAAAGTTTGCTTGGAAAAAATGGAAACCTAAAGACGACGAAACGAAAAAAAAATAA

Coding sequence (CDS)

ATGGCTGAGAACGAAGAAAATATTATGAGAAACCCTAAATTGCCAAGTTTTGTGCGAAATAATCGACAGAAATTAAATAATGTGGATCAAAAGAAAGAAGAAATTAATCTACCTGAGACGAAGTCTGAGGTAGTCACTATTCCGGCACCGGAAGTGGTTCCCCCTCCGCCGATTAAGGCTGAGATCAAGCACCATGGGAAGTTTTCACATCCGGCAATCGTGTGGTCGTTATGTGCTTTAGGAGGATTTTTCATCATAAAGTTTGCTTGGAAAAAATGGAAACCTAAAGACGACGAAACGAAAAAAAAATAA

Protein sequence

MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKAEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK*

Homology

[Close]

BLAST of Csa5G616350 vs. TrEMBL
Match: A0A0A0KRF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.4e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKA 60
           MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKA
Sbjct: 1   MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKA 60

Query: 61  EIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK 104
           EIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK
Sbjct: 61  EIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK 103

[Close]

BLAST of Csa5G616350 vs. TrEMBL
Match: A0A061FVY2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_043550 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.4e-07
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 1


Query: 1   MAENEENIMR--NPKLPS-----FVR---NNRQKLNNVDQKK--EEINLPETKS---EVV 60
           MA N E  ++  NPK P      F +   N ++K   V +KK  ++ +  E KS   +VV
Sbjct: 1   MARNVEIEIKEENPKFPGNLFLIFTKLPFNRKRKAEVVIEKKGNDKPSADEKKSNKPDVV 60

Query: 61  TIPAPEVVPPPPIKAEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK 104
            +  P    PPP+K E +  G  S   I+W + A+GGFF++K+ W +WK + +   KK
Sbjct: 61  KLSEPRPAVPPPVKLEAEEPGMTSSRIILWQVYAIGGFFLLKWIWARWKERKEMGGKK 118

[Close]

BLAST of Csa5G616350 vs. TrEMBL
Match: F6I5U7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0074g00230 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-06
Identity = 29/92 (31.52%), Postives = 47/92 (51.09%), Query Frame = 1


Query: 6   ENIMRNPKLPSFVRNNRQKLNNVDQKKE-EINLPETKSEVVTIPAPEVVPPPPIKAEIKH 65
           +N+++N  LP F    R      + + E E  +   K +VV       + PPP+K E + 
Sbjct: 25  QNLVKNLPLPKFEAKQRVADRGQEGQGEGEGEVISKKVDVVRFSEKRPIIPPPLKLEAEE 84

Query: 66  HGKFSHPAIVWSLCALGGFFIIKFAWKKWKPK 97
               S P ++W + ALGGF I+K+AW +W  +
Sbjct: 85  SDNSSSPTVLWQVYALGGFIILKWAWARWNER 116

[Close]

BLAST of Csa5G616350 vs. TrEMBL
Match: A0A0J8CM79_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g086750 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.1e-06
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 1


Query: 16  SFVRNNRQKLNNVDQKKEEINLPETKS---EVVTIPAPEVVPPPPIKAEIKHHGKFSHPA 75
           +F  NN    N  D+  + ++   +K+   +VV  P  +    PP+K E +   + ++P 
Sbjct: 39  NFNNNNNNNDNESDKSVKRVDSEGSKTKTPDVVRFPVTQKSEVPPLKVENEDAQEDTNPI 98

Query: 76  IVWSLCALGGFFIIKFAWKKWKPKDDETKK 103
           ++W + ALGGF I+K+AW KW+ +    KK
Sbjct: 99  VLWQVYALGGFIILKWAWGKWQERKASAKK 128

[Close]

BLAST of Csa5G616350 vs. NCBI nr
Match: gi|778706419|ref|XP_011655848.1| (PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 3.5e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKA 60
           MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKA
Sbjct: 1   MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKA 60

Query: 61  EIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK 104
           EIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK
Sbjct: 61  EIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK 103

[Close]

BLAST of Csa5G616350 vs. NCBI nr
Match: gi|659091896|ref|XP_008446792.1| (PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 9.2e-31
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 1


Query: 1   MAENEENIMRNPKLPSFV-RNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIK 60
           MAEN+E+I++NPKLPSFV  NNRQK+  VDQKKEE N PE K +VVTIPA  VV PPP+K
Sbjct: 1   MAENKEHIIQNPKLPSFVLNNNRQKV--VDQKKEETNPPE-KPDVVTIPASGVVSPPPVK 60

Query: 61  AEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKK 103
           AE K  GKFSHPA++W L ALGGF II +AW+KW+P DDETKK
Sbjct: 61  AEFKFPGKFSHPAVLWPLSALGGFLIIWWAWQKWRPDDDETKK 100

[Close]

BLAST of Csa5G616350 vs. NCBI nr
Match: gi|1009119513|ref|XP_015876421.1| (PREDICTED: uncharacterized protein LOC107413075 [Ziziphus jujuba])

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-08
Identity = 28/72 (38.89%), Postives = 45/72 (62.50%), Query Frame = 1


Query: 33  EEINLPET-KSEVVTIPAPEVVPPPPIKAEIKHHGKFSHPAIVWSLCALGGFFIIKFAWK 92
           +E N  ET K ++V  P  ++V PPP+  E + HGK S+P I+W + ALGGF ++++ W 
Sbjct: 57  DERNQSETQKPDMVKFPKAQLVAPPPVAVESEEHGKTSNPVILWQVYALGGFLVLRWIWA 116

Query: 93  KWKPKDDETKKK 104
           +W  + +   KK
Sbjct: 117 RWNERKERKDKK 128

[Close]

BLAST of Csa5G616350 vs. NCBI nr
Match: gi|590566237|ref|XP_007010174.1| (Uncharacterized protein TCM_043550 [Theobroma cacao])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 1


Query: 1   MAENEENIMR--NPKLPS-----FVR---NNRQKLNNVDQKK--EEINLPETKS---EVV 60
           MA N E  ++  NPK P      F +   N ++K   V +KK  ++ +  E KS   +VV
Sbjct: 1   MARNVEIEIKEENPKFPGNLFLIFTKLPFNRKRKAEVVIEKKGNDKPSADEKKSNKPDVV 60

Query: 61  TIPAPEVVPPPPIKAEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK 104
            +  P    PPP+K E +  G  S   I+W + A+GGFF++K+ W +WK + +   KK
Sbjct: 61  KLSEPRPAVPPPVKLEAEEPGMTSSRIILWQVYAIGGFFLLKWIWARWKERKEMGGKK 118

[Close]

BLAST of Csa5G616350 vs. NCBI nr
Match: gi|1000938164|ref|XP_015583705.1| (PREDICTED: uncharacterized protein LOC8263589 [Ricinus communis])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 31/90 (34.44%), Postives = 45/90 (50.00%), Query Frame = 1


Query: 13  KLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKAEIKHHGKFSHPA 72
           K   F  N   K+  V  K++E        +VV    P+ + PPP+K E +   K SHP 
Sbjct: 32  KFLKFGNNLDPKVEKVLNKEKEKTGSNKPGDVVKFADPKPITPPPLKIENQEASKLSHPL 91

Query: 73  IVWSLCALGGFFIIKFAWKKWKPKDDETKK 103
           ++  + ALGGF I+K+ W +WK    E  K
Sbjct: 92  VLLPVYALGGFIILKWVWARWKEGRREPSK 121

The following BLAST results are available for this feature:

BLAST of Csa5G616350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRF3_CUCSA	2.4e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616350 PE=4 SV=1	[more]
A0A061FVY2_THECC	8.4e-07	33.90	Uncharacterized protein OS=Theobroma cacao GN=TCM_043550 PE=4 SV=1	[more]
F6I5U7_VITVI	5.5e-06	31.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0074g00230 PE=4 SV=...	[more]
A0A0J8CM79_BETVU	7.1e-06	31.11	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g086750 PE=4 S...	[more]

BLAST of Csa5G616350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778706419\|ref\|XP_011655848.1\|	3.5e-54	100.00	PREDICTED: uncharacterized protein LOC101213355 [Cucumis sativus]	[more]
gi\|659091896\|ref\|XP_008446792.1\|	9.2e-31	69.90	PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo]	[more]
gi\|1009119513\|ref\|XP_015876421.1\|	1.7e-08	38.89	PREDICTED: uncharacterized protein LOC107413075 [Ziziphus jujuba]	[more]
gi\|590566237\|ref\|XP_007010174.1\|	1.2e-06	33.90	Uncharacterized protein TCM_043550 [Theobroma cacao]	[more]
gi\|1000938164\|ref\|XP_015583705.1\|	1.6e-06	34.44	PREDICTED: uncharacterized protein LOC8263589 [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU104520	cucumber EST collection version 3.0	transcribed_cluster
CU108932	cucumber EST collection version 3.0	transcribed_cluster
CU170743	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G616350.1	Csa5G616350.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU104520	CU104520	transcribed_cluster
CU108932	CU108932	transcribed_cluster
CU170743	CU170743	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G616350	MELO3C012374	Melon (DHL92) v3.5.1	cumeB377
Csa5G616350	MELO3C012374.2	Melon (DHL92) v3.6.1	cumedB359
Csa5G616350	CSPI05G26590	Wild cucumber (PI 183967)	cpicuB239
Csa5G616350	Cucsa.308900	Cucumber (Gy14) v1	cgycuB441
Csa5G616350	CsGy5G026030	Cucumber (Gy14) v2	cgybcuB223
Csa5G616350	Carg01920	Silver-seed gourd	carcuB0857

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G616350	Silver-seed gourd	carcuB0515
Csa5G616350	Silver-seed gourd	carcuB0709
Csa5G616350	Watermelon (97103) v2	cuwmbB383
Csa5G616350	Wax gourd	cuwgoB488
Csa5G616350	Wax gourd	cuwgoB501
Csa5G616350	Cucumber (Gy14) v1	cgycuB540
Csa5G616350	Cucurbita maxima (Rimu)	cmacuB417
Csa5G616350	Cucurbita maxima (Rimu)	cmacuB748
Csa5G616350	Cucurbita moschata (Rifu)	cmocuB406
Csa5G616350	Cucurbita moschata (Rifu)	cmocuB738
Csa5G616350	Cucurbita moschata (Rifu)	cmocuB727
Csa5G616350	Watermelon (Charleston Gray)	cuwcgB394
Csa5G616350	Watermelon (Charleston Gray)	cuwcgB414
Csa5G616350	Watermelon (97103) v1	cuwmB380
Csa5G616350	Watermelon (97103) v1	cuwmB401
Csa5G616350	Watermelon (97103) v1	cuwmB430
Csa5G616350	Cucurbita pepo (Zucchini)	cpecuB041
Csa5G616350	Cucurbita pepo (Zucchini)	cpecuB439
Csa5G616350	Bottle gourd (USVL1VR-Ls)	culsiB368
Csa5G616350	Bottle gourd (USVL1VR-Ls)	culsiB389
Csa5G616350	Cucumber (Gy14) v2	cgybcuB075
Csa5G616350	Cucumber (Gy14) v2	cgybcuB280