Carg01673 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01673
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATPase inhibitor, putative
Location	Cucurbita_argyrosperma_scaffold_004 : 2327041 .. 2328711 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAACCAAGATTGAAGAAGCCACTGTCACTCTCTAGAATATTTCGATACACAGAACGCAAATGGCCATGCGATCGGTGCTCAGTCGTATCTCGCCGACTCCCTTGACGATGCGTGCTTCCGGCCCCGGTGGATTTCGATACTTTTCCGACGGCAAAGGTCGAGTTCTCAGTGAGGAGGAGCGTGCTGCCGAGAACGTCTACATCCAGGTTTAATTTGTTGTTACAAATGTTAGAGAAAAATGTGTAGAAACTTATAGCACTCCGATTATTGATCTTCTCTGTTGAAAGTACACTTGTTAGGAACTCAGATAGAAATGGACTGGAGCGAAAGTGAAGTTACTGTTTCGGTATTATGTTTTTGTGCGCGGAGTTTCCGTTCTCGGATTTATAATAGTAGGATTATGATCATCTATCTGTTTGATCGAATGTTCACGTGTTCAAAACTCAAATAAAACGGATTGGAGTGAGAGAATGTTTACTGTTTATATCAGATGGTATTTCTTTTCGTGCAAGGAGGTTGTGATATCCGATCTACTATAGTAGGAGATGGTTTATCGAATGTTCATTTGTACAGAACTCAAATAGATACGGACTGAAGTGAAAATCAAGTTATTGTCTATATTAGACGGTACCTCTTTTCACGCTAGGAGCTTGTGTTCTCCGACTTTTAGTTATTGTCTTCCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTGTAGAAAATGGAAAGAGAAAAGCTGGAGAAACAGAGGCTTAAGGCTGAGAAAGAAAAGGCCGAAAAGGAGAAAGAACAGTCGGAGAAGGTATTCATTACTGTTATGATTTTGGTATAAATCGGCGACTTGTTTTCTGGTTGACCATTATTTGTCAGTTGATTTGTGGCATAAGAGACGATGATGATCCATATTTTGTGATCGATGCAATATTTATGTGGATAGTGCTTTGCGGCTTTGTGAGATGTGGATCCATTATCCTTTATTCTTTGTTTATGATCCTTTGCTTGAGTACCTTGCATTGGCTATTCATTCGATGCTATTATTCAGTTTTTTATACCTATATGGAAATTGAGCACAAGTCTCTGAAATAGATATAGATTGATAGCTCTTATGGTTGACTTTTGCTTATGACCAATTGCGGTTCTGTGGGAACTATCTATATGTTCGTAGCTGCTGAGATTTAATAGATGCCTTCGATTTAGTCCTCGTGTCCTCATGTAGCATGCCGAAGCCTTGTTCTTTTTTCTTTTTATAGCAAAAACATGTTTCTAATCATCACTTTATACTTCTAAAATATGACAAATTTTGCTGCTATTTTGGAACATGACAACCTTCTCTCACTATTGTTGTAACTGTTACTGACTGTTGGTCAAATGAATGTGCAAGTTGAGGGACGTGCAGAATAATTGATGATATGTTTCACTCTATCTATCTTGGAAAAAGTTGTATTGTTGTCAATAAACTTTTCAATACCAGTTTTTTGGCTAGGTTCCTTCTTGAATGGCAATATATAACTGCTTTCTTATTTTAGAACTTGTGTCTATCCTTTTTCATCATTGCTTCTTGTATGCAGAAACGTGAAGGGACCCAGTAGATAATGGTGGCTCATCTGCAAGTTGTATCATCTGCTTTGGAGTTTGGTAGCAAGGAAATAAATGTTGCAGATCCCCCCCCCCC

mRNA sequence

GTAACCAAGATTGAAGAAGCCACTGTCACTCTCTAGAATATTTCGATACACAGAACGCAAATGGCCATGCGATCGGTGCTCAGTCGTATCTCGCCGACTCCCTTGACGATGCGTGCTTCCGGCCCCGGTGGATTTCGATACTTTTCCGACGGCAAAGGTCGAGTTCTCAGTGAGGAGGAGCGTGCTGCCGAGAACGTCTACATCCAGAAAATGGAAAGAGAAAAGCTGGAGAAACAGAGGCTTAAGGCTGAGAAAGAAAAGGCCGAAAAGGAGAAAGAACAGTCGGAGAAGAAACGTGAAGGGACCCAGTAGATAATGGTGGCTCATCTGCAAGTTGTATCATCTGCTTTGGAGTTTGGTAGCAAGGAAATAAATGTTGCAGATCCCCCCCCCCC

Coding sequence (CDS)

ATGGCCATGCGATCGGTGCTCAGTCGTATCTCGCCGACTCCCTTGACGATGCGTGCTTCCGGCCCCGGTGGATTTCGATACTTTTCCGACGGCAAAGGTCGAGTTCTCAGTGAGGAGGAGCGTGCTGCCGAGAACGTCTACATCCAGAAAATGGAAAGAGAAAAGCTGGAGAAACAGAGGCTTAAGGCTGAGAAAGAAAAGGCCGAAAAGGAGAAAGAACAGTCGGAGAAGAAACGTGAAGGGACCCAGTAG

Protein sequence

MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQKMEREKLEKQRLKAEKEKAEKEKEQSEKKREGTQ

Homology

[Close]

BLAST of Carg01673 vs. NCBI nr
Match: XP_022939365.1 (beta-mannosyltransferase 4-like [Cucurbita moschata] >XP_023550939.1 beta-mannosyltransferase 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 51
          MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK
Sbjct: 1  MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 50

[Close]

BLAST of Carg01673 vs. NCBI nr
Match: XP_022992706.1 (beta-mannosyltransferase 4-like [Cucurbita maxima])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 51
          MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK
Sbjct: 1  MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 50

[Close]

BLAST of Carg01673 vs. NCBI nr
Match: XP_008456607.1 (PREDICTED: uncharacterized protein LOC103496516 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 6.0e-13
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1  MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 51
          MAMRSVLSR S TP T RA+G GGFR+ SDGKGRVLSEEERAAENVYIQK
Sbjct: 1  MAMRSVLSRSSLTPCTARAAGAGGFRFLSDGKGRVLSEEERAAENVYIQK 50

[Close]

BLAST of Carg01673 vs. NCBI nr
Match: XP_022990504.1 (uncharacterized protein LOC111487345 [Cucurbita maxima] >XP_023523530.1 uncharacterized protein LOC111787725 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-12
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 51
          MAMRSV  R S TP T+RA+G GGFR+ SDGKGRVLSEEERAAENVYIQK
Sbjct: 1  MAMRSVFGRSSLTPSTVRAAGVGGFRFLSDGKGRVLSEEERAAENVYIQK 50

[Close]

BLAST of Carg01673 vs. NCBI nr
Match: XP_022961415.1 (uncharacterized protein LOC111461995 [Cucurbita moschata])

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1  MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 51
          MAMRSV  R S TP T+R +G GGFR+ SDGKGRVLSEEERAAENVYIQK
Sbjct: 1  MAMRSVFGRSSLTPSTVRTAGVGGFRFLSDGKGRVLSEEERAAENVYIQK 50

[Close]

BLAST of Carg01673 vs. TAIR10
Match: AT5G04750.1 (F1F0-ATPase inhibitor protein, putative)

HSP 1 Score: 46.2 bits (108), Expect = 1.1e-05
Identity = 27/49 (55.10%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 2  AMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 51
          A RSV+S   P             RYFSD KGRVLSEEERA E++YIQK
Sbjct: 24 ASRSVVSTRGP-----------AIRYFSDDKGRVLSEEERAKESMYIQK 61

[Close]

BLAST of Carg01673 vs. TrEMBL
Match: tr|A0A1S3C383|A0A1S3C383_CUCME (uncharacterized protein LOC103496516 OS=Cucumis melo OX=3656 GN=LOC103496516 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1  MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 51
          MAMRSVLSR S TP T RA+G GGFR+ SDGKGRVLSEEERAAENVYIQK
Sbjct: 1  MAMRSVLSRSSLTPCTARAAGAGGFRFLSDGKGRVLSEEERAAENVYIQK 50

[Close]

BLAST of Carg01673 vs. TrEMBL
Match: tr|A0A0A0K8J7|A0A0A0K8J7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046230 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 39/50 (78.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1  MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 51
          MAMRSVL+R S T  T RA   GGFR+ SDGKGRVLSEEERAAENVYIQK
Sbjct: 1  MAMRSVLTRSSLTTSTARA---GGFRFLSDGKGRVLSEEERAAENVYIQK 47

[Close]

BLAST of Carg01673 vs. TrEMBL
Match: tr|A0A2I4DKK4|A0A2I4DKK4_9ROSI (ATPase inhibitor, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC108981071 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1  MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 51
          MAMRSVLSRIS +         G  RYFSDGKGRVL EEERAAENVYI+K
Sbjct: 1  MAMRSVLSRISASVSRSMEFTRGATRYFSDGKGRVLGEEERAAENVYIKK 50

[Close]

BLAST of Carg01673 vs. TrEMBL
Match: tr|A0A2K1YZG8|A0A2K1YZG8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G240400v3 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-07
Identity = 34/49 (69.39%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 1  MAMRSVLSRISPTPLTMRASGPGGFRYFSDGKGRVLSEEERAAENVYIQ 50
          MA RS LSR+S   +    S  G  RYFSDGKGRVLSEEERAAENVYIQ
Sbjct: 1  MATRSALSRLSLITIRSMKSTRGATRYFSDGKGRVLSEEERAAENVYIQ 49

[Close]

BLAST of Carg01673 vs. TrEMBL
Match: tr|A0A2R6PYF9|A0A2R6PYF9_ACTCH (Uncharacterized protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc25311 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.3e-07
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1  MAMRSVLSRISPTPLT--MRASGPGGFRYFSDGKGRVLSEEERAAENVYIQK 51
          MAMRSV+SR     L    R S   G RYFSDGKGRVLSEEERAAE++YIQK
Sbjct: 1  MAMRSVVSRTQLCRLMEGNRRSATSGLRYFSDGKGRVLSEEERAAESIYIQK 52

The following BLAST results are available for this feature:

BLAST of Carg01673 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939365.1	1.6e-18	100.00	beta-mannosyltransferase 4-like [Cucurbita moschata] >XP_023550939.1 beta-mannos...	[more]
XP_022992706.1	1.6e-18	100.00	beta-mannosyltransferase 4-like [Cucurbita maxima]	[more]
XP_008456607.1	6.0e-13	84.00	PREDICTED: uncharacterized protein LOC103496516 [Cucumis melo]	[more]
XP_022990504.1	5.1e-12	80.00	uncharacterized protein LOC111487345 [Cucurbita maxima] >XP_023523530.1 uncharac...	[more]
XP_022961415.1	1.5e-11	78.00	uncharacterized protein LOC111461995 [Cucurbita moschata]	[more]

BLAST of Carg01673 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04750.1	1.1e-05	55.10	F1F0-ATPase inhibitor protein, putative	[more]

BLAST of Carg01673 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01673 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C383\|A0A1S3C383_CUCME	4.0e-13	84.00	uncharacterized protein LOC103496516 OS=Cucumis melo OX=3656 GN=LOC103496516 PE=...	[more]
tr\|A0A0A0K8J7\|A0A0A0K8J7_CUCSA	2.0e-09	78.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046230 PE=4 SV=1	[more]
tr\|A0A2I4DKK4\|A0A2I4DKK4_9ROSI	1.1e-07	70.00	ATPase inhibitor, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC108981071 P...	[more]
tr\|A0A2K1YZG8\|A0A2K1YZG8_POPTR	1.9e-07	69.39	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G240400v3 PE=...	[more]
tr\|A0A2R6PYF9\|A0A2R6PYF9_ACTCH	4.3e-07	67.31	Uncharacterized protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY0...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01673-RA	Carg01673-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 44..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..83
None	No IPR available	PANTHER	PTHR33878	FAMILY NOT NAMED	coord: 1..80
None	No IPR available	PANTHER	PTHR33878:SF2	SUBFAMILY NOT NAMED	coord: 1..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01673	Cla013688	Watermelon (97103) v1	carwmB0826
Carg01673	Csa6G046230	Cucumber (Chinese Long) v2	carcuB0850
Carg01673	MELO3C019903	Melon (DHL92) v3.5.1	carmeB0823
Carg01673	ClCG08G008330	Watermelon (Charleston Gray)	carwcgB0805
Carg01673	CSPI06G04020	Wild cucumber (PI 183967)	carcpiB0870
Carg01673	Cucsa.364600	Cucumber (Gy14) v1	carcgyB0955
Carg01673	CmaCh04G025130	Cucurbita maxima (Rimu)	carcmaB1150
Carg01673	CmaCh15G005260	Cucurbita maxima (Rimu)	carcmaB1148
Carg01673	CmoCh04G026310	Cucurbita moschata (Rifu)	carcmoB1121
Carg01673	CmoCh15G005330	Cucurbita moschata (Rifu)	carcmoB1118
Carg01673	Lsi08G006420	Bottle gourd (USVL1VR-Ls)	carlsiB758
Carg01673	Cp4.1LG13g10510	Cucurbita pepo (Zucchini)	carcpeB1157
Carg01673	Cp4.1LG01g24970	Cucurbita pepo (Zucchini)	carcpeB1158
Carg01673	CsGy6G003990	Cucumber (Gy14) v2	carcgybB0824
Carg01673	MELO3C019903.2	Melon (DHL92) v3.6.1	carmedB0834
Carg01673	CsaV3_6G004310	Cucumber (Chinese Long) v3	carcucB0874
Carg01673	Cla97C08G151080	Watermelon (97103) v2	carwmbB0864
Carg01673	Bhi04G001317	Wax gourd	carwgoB0965

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01673	Carg15855	Silver-seed gourd	carcarB076

The following block(s) are covering this gene:

None