Csa6G046230 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G046230
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR007648 (ATPase inhibitor, IATP, mitochondria)
LocationChr6 : 3694379 .. 3696056 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGCGATCGGTGCTCACTCGATCATCGTTGACTACTTCGACGGCGCGTGCCGGTGGATTCCGCTTCCTCTCCGACGGCAAAGGTCGAGTGCTTAGTGAGGAGGAGCGTGCTGCCGAGAACGTCTACATCCAGGTTGAATTATTAGTTTCGAATGTTCGAGAAAAGTTTGTAGAAACCAGTAGAACGCCGAGTGTCGACCGGTTTTTGTAATTTTCAGTTGTTACAAACTCAGATGGAATGGTTTAGACTCTAGAGCGAGAGCGAAGTTACTGTTTCGATACTTTCTTTTTTTGTGCTCGGAATTTGCTTTCTCTGATTTATCGCGGAGTATGGTCTTCAATCTGTTTGACCGAATACACACTTGTTCGAAACTCTAATAAAAATGAACTGGAGTGGGAGCATGTTTACTGTTTATGTCAGATGGTGTTTGTGAGGAATTTGTGATCTCTGATTTACTGCAGTAGGAGTTGGCTTGGCGAATTTCCATTTTCTCGAAACTTTAATAGAAATGCACAGGACTGTAAATGAAGTTATGGAATCTATGTTCTCCGATTTTGAGTTATTGTTTTTCTAATGTTTGTAGAAAATGGAAAGAGAAAGGTTGGAGAAGCTGAGGCTTAAGGCAGAGAAAGAAAAGGCTCAGAAGGAGAAAGAACAGTCTGAGAAGGTATTCGTCACTCTTATAATTTTGGTTGAAATTGTCGAATATTGTTTATTAGTTGATTTGTGATATGTATGACAGTGAAAAACTGTGTTTTGTGATTATGCAACATTTCTTTTCATCATGCTTTATGGCTTTGTGGGATTTTGGATCCATCGTCATCCTTTGTTTGTTCCCAACTCTTTGCTTGAGTAGCTTGCACTGACTATTTGTTCGATCAGTATTTGATTTCTTGTATCTATATGGAAATTGAGCCCAAGCTTCTGATAAATAGATATCGATTGCAAGATATTATGGTCAGCTTTTGCTTGTGTCCAATCCAATTATGGTTCATTAGGAACTACGATTTTCATAGCGGCTGAAATTTAATGGGATTTAATCCTTGAATCTTCGTTTCTTGTCTCCTGCAGAAATTTGTTACCACTATTAAAGTATTCTGTAAATAAAGCCCGAATCTAGAATGCTGTTATGGCAGTATGCCGAAGCACCTTTTTGTTCCTTATCTCTTTCTTTCAGTGCTTCGTGTCTCTAGTCATCAGACTGATCGGTTTATACTTGAAATATGACAAAGTTTTGGTACTACTCTTGTGATATGACAAACTTTCTCACTAATTTTTGTACTTTTACCATTTCCCAAACAAATTTACAAGTTGAGTTATTAAATTCCACTTCAGGAGTAGCATATCTATCTTCTAAGGAGTGTGAGGCCTTTTGGTTTTTCTTTTTTCAATGTGGGTTCTCAACAGATCTCTCAAGATGATGTCCCTTTTGTGTTTACCATTCTTTTTTATTGGACCTAATACTTGCCCATATTAGATAATATGGGTTGACATGAGATTCTCCTCCGCTTGATAATGATGATGTCTCACTATATCTATAAGGAAAAAGTTGTAATGTCATAATTTAAATGTTTCAATATTAACTTAACTCTCGTTTCTCATTTTGTAAACTTTGTTTACCCTTTTTCTCATCATTGTTTCATATCTGCAGAAACATGAAGGGACCCAGTAG

mRNA sequence

ATGGCCATGCGATCGGTGCTCACTCGATCATCGTTGACTACTTCGACGGCGCGTGCCGGTGGATTCCGCTTCCTCTCCGACGGCAAAGGTCGAGTGCTTAGTGAGGAGGAGCGTGCTGCCGAGAACGTCTACATCCAGAAAATGGAAAGAGAAAGGTTGGAGAAGCTGAGGCTTAAGGCAGAGAAAGAAAAGGCTCAGAAGGAGAAAGAACAGTCTGAGAAGAAACATGAAGGGACCCAGTAG

Coding sequence (CDS)

ATGGCCATGCGATCGGTGCTCACTCGATCATCGTTGACTACTTCGACGGCGCGTGCCGGTGGATTCCGCTTCCTCTCCGACGGCAAAGGTCGAGTGCTTAGTGAGGAGGAGCGTGCTGCCGAGAACGTCTACATCCAGAAAATGGAAAGAGAAAGGTTGGAGAAGCTGAGGCTTAAGGCAGAGAAAGAAAAGGCTCAGAAGGAGAAAGAACAGTCTGAGAAGAAACATGAAGGGACCCAGTAG

Protein sequence

MAMRSVLTRSSLTTSTARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRLKAEKEKAQKEKEQSEKKHEGTQ*
Homology
[Close]
BLAST of Csa6G046230 vs. TrEMBL
Match: A0A0A0K8J7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046230 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.7e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MAMRSVLTRSSLTTSTARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRLKA 60
          MAMRSVLTRSSLTTSTARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRLKA
Sbjct: 1  MAMRSVLTRSSLTTSTARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRLKA 60

Query: 61 EKEKAQKEKEQSEKKHEGTQ 81
          EKEKAQKEKEQSEKKHEGTQ
Sbjct: 61 EKEKAQKEKEQSEKKHEGTQ 80

[Close]
BLAST of Csa6G046230 vs. TrEMBL
Match: B9HVV9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s24670g PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.8e-20
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1 

Query: 1  MAMRSVLTRSSLTT---STARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLR 60
          MA RS L+R SL T     +  G  R+ SDGKGRVLSEEERAAENVYIQKMERERLEKL+
Sbjct: 1  MATRSALSRLSLITIRSMKSTRGATRYFSDGKGRVLSEEERAAENVYIQKMERERLEKLK 60

Query: 61 LKAEKEKAQKEKEQSEKKHEGTQ 81
          LK EKEKA+KEK+ ++K+ EG+Q
Sbjct: 61 LKQEKEKAEKEKQGADKRIEGSQ 83

[Close]
BLAST of Csa6G046230 vs. TrEMBL
Match: W9QGS0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018375 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-18
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MAMRSVLTRSSLTTSTARA--GGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRL 60
          MAMRSV+ R  + T +     G  R+LSDGKGR+LSEEERAAENVYIQKMERER EKL+ 
Sbjct: 1  MAMRSVVRRVGILTRSMETTRGATRYLSDGKGRILSEEERAAENVYIQKMERERSEKLKQ 60

Query: 61 KAEKEKAQKEKEQSEK 75
          KAEKEKAQKEKE ++K
Sbjct: 61 KAEKEKAQKEKENADK 76

[Close]
BLAST of Csa6G046230 vs. TrEMBL
Match: A0A067LFT4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26475 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-18
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 1 

Query: 1  MAMRSVLTRSSLTTST-ARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRLK 60
          MA R  ++R  +T S  +  G  R+ SDGKGRVLSEEERAAENVYIQKMERERLEKL+ K
Sbjct: 1  MATRLAISRLGITRSMESTRGATRYFSDGKGRVLSEEERAAENVYIQKMERERLEKLKQK 60

Query: 61 AEKEKAQKEKEQSEKKHE 78
          AEKEKA KEKE +EKK E
Sbjct: 61 AEKEKAAKEKESAEKKTE 78

[Close]
BLAST of Csa6G046230 vs. TrEMBL
Match: A0A067E0M2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034789mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-18
Identity = 56/78 (71.79%), Postives = 60/78 (76.92%), Query Frame = 1 

Query: 1  MAMRSVLTRSSLTTST-ARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRLK 60
          MAMRS L R  +T S  +  G  R+ SD KGRVLSEEERAAENVYIQKMERERLEK R K
Sbjct: 1  MAMRSALCRLKVTRSMESTRGATRYFSDDKGRVLSEEERAAENVYIQKMERERLEKQRKK 60

Query: 61 AEKEKAQKEKEQSEKKHE 78
          AEKEK QKEKE +EKK E
Sbjct: 61 AEKEKLQKEKEGAEKKTE 78

[Close]
BLAST of Csa6G046230 vs. TAIR10
Match: AT5G04750.1 (AT5G04750.1 F1F0-ATPase inhibitor protein, putative)

HSP 1 Score: 68.2 bits (165), Expect = 2.7e-12
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 10 SSLTTSTARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRLKAEKEKAQKEK 69
          +S +  + R    R+ SD KGRVLSEEERA E++YIQKMERERLEK + K E++K   EK
Sbjct: 24 ASRSVVSTRGPAIRYFSDDKGRVLSEEERAKESMYIQKMERERLEK-KKKLEQDKLDGEK 83

Query: 70 EQSEKKHE 78
            + KK E
Sbjct: 84 GSANKKPE 90

[Close]
BLAST of Csa6G046230 vs. TAIR10
Match: AT2G27730.1 (AT2G27730.1 copper ion binding)

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-06
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 

Query: 13 TTSTARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRLKAEKEKA 66
          T +  R    RF S   G+VLSEEERAAENV+I+KME+E+L+KL  +   E+A
Sbjct: 3  TRNALRIVSRRFSS---GKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQA 52

[Close]
BLAST of Csa6G046230 vs. NCBI nr
Match: gi|449446299|ref|XP_004140909.1| (PREDICTED: uncharacterized protein At2g27730, mitochondrial [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 8.2e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MAMRSVLTRSSLTTSTARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRLKA 60
          MAMRSVLTRSSLTTSTARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRLKA
Sbjct: 1  MAMRSVLTRSSLTTSTARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRLKA 60

Query: 61 EKEKAQKEKEQSEKKHEGTQ 81
          EKEKAQKEKEQSEKKHEGTQ
Sbjct: 61 EKEKAQKEKEQSEKKHEGTQ 80

[Close]
BLAST of Csa6G046230 vs. NCBI nr
Match: gi|659113500|ref|XP_008456607.1| (PREDICTED: uncharacterized protein LOC103496516 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 4.2e-31
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 1 

Query: 1  MAMRSVLTRSSLTTSTARA---GGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLR 60
          MAMRSVL+RSSLT  TARA   GGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLR
Sbjct: 1  MAMRSVLSRSSLTPCTARAAGAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLR 60

Query: 61 LKAEKEKAQKEKEQSEKKHEGTQ 81
          LKAEKEKA+KEKEQSEKKHEGTQ
Sbjct: 61 LKAEKEKAEKEKEQSEKKHEGTQ 83

[Close]
BLAST of Csa6G046230 vs. NCBI nr
Match: gi|224113431|ref|XP_002316494.1| (hypothetical protein POPTR_0010s24670g [Populus trichocarpa])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1 

Query: 1  MAMRSVLTRSSLTT---STARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLR 60
          MA RS L+R SL T     +  G  R+ SDGKGRVLSEEERAAENVYIQKMERERLEKL+
Sbjct: 1  MATRSALSRLSLITIRSMKSTRGATRYFSDGKGRVLSEEERAAENVYIQKMERERLEKLK 60

Query: 61 LKAEKEKAQKEKEQSEKKHEGTQ 81
          LK EKEKA+KEK+ ++K+ EG+Q
Sbjct: 61 LKQEKEKAEKEKQGADKRIEGSQ 83

[Close]
BLAST of Csa6G046230 vs. NCBI nr
Match: gi|1009119695|ref|XP_015876519.1| (PREDICTED: uncharacterized protein At2g27730, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 1  MAMRS-VLTRSSLT-TSTARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRL 60
          MAMRS VL+R+ LT T  +  G  R+ SD KGRVLSEEERAAEN+YIQKMERERLEK +L
Sbjct: 1  MAMRSLVLSRAVLTRTMESTRGPTRYFSDSKGRVLSEEERAAENIYIQKMERERLEKQKL 60

Query: 61 KAEKEKAQKEKEQSEKKHEGT 80
          KAEKEKA+KEKE S KK EGT
Sbjct: 61 KAEKEKAEKEKENSGKKPEGT 81

[Close]
BLAST of Csa6G046230 vs. NCBI nr
Match: gi|1009165502|ref|XP_015901073.1| (PREDICTED: uncharacterized protein At2g27730, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-19
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 1  MAMRS-VLTRSSLTTST-ARAGGFRFLSDGKGRVLSEEERAAENVYIQKMERERLEKLRL 60
          MAMRS VL+R+ LT +  +  G  R+ SD KGRVLSEEERAAEN+YIQKMERERLEK +L
Sbjct: 1  MAMRSLVLSRAVLTRAMESTRGPTRYFSDSKGRVLSEEERAAENIYIQKMERERLEKQKL 60

Query: 61 KAEKEKAQKEKEQSEKKHEGT 80
          KAEKEKA+KEKE S KK EGT
Sbjct: 61 KAEKEKAEKEKENSGKKPEGT 81

The following BLAST results are available for this feature:
BLAST of Csa6G046230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8J7_CUCSA5.7e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046230 PE=4 SV=1[more]
B9HVV9_POPTR8.8e-2067.47Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s24670g PE=4 SV=1[more]
W9QGS0_9ROSA1.3e-1869.74Uncharacterized protein OS=Morus notabilis GN=L484_018375 PE=4 SV=1[more]
A0A067LFT4_JATCU1.7e-1869.23Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26475 PE=4 SV=1[more]
A0A067E0M2_CITSI1.7e-1871.79Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034789mg PE=4 SV=1[more]
BLAST of Csa6G046230 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04750.12.7e-1254.41 F1F0-ATPase inhibitor protein, putative[more]
AT2G27730.11.7e-0652.83 copper ion binding[more]
BLAST of Csa6G046230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446299|ref|XP_004140909.1|8.2e-35100.00PREDICTED: uncharacterized protein At2g27730, mitochondrial [Cucumis sativus][more]
gi|659113500|ref|XP_008456607.1|4.2e-3191.57PREDICTED: uncharacterized protein LOC103496516 [Cucumis melo][more]
gi|224113431|ref|XP_002316494.1|1.3e-1967.47hypothetical protein POPTR_0010s24670g [Populus trichocarpa][more]
gi|1009119695|ref|XP_015876519.1|1.3e-1972.84PREDICTED: uncharacterized protein At2g27730, mitochondrial-like [Ziziphus jujub... [more]
gi|1009165502|ref|XP_015901073.1|3.7e-1971.60PREDICTED: uncharacterized protein At2g27730, mitochondrial-like [Ziziphus jujub... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007648ATPase_inhibitor_mt
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0032780negative regulation of ATPase activity
Vocabulary: Molecular Function
TermDefinition
GO:0042030ATPase inhibitor activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032780 negative regulation of ATPase activity
biological_process GO:0045980 negative regulation of nucleotide metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0042030 ATPase inhibitor activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU107225cucumber EST collection version 3.0transcribed_cluster
CU151709cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G046230.1Csa6G046230.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU107225CU107225transcribed_cluster
CU151709CU151709transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007648Mitochondrial ATPase inhibitorPFAMPF04568IATPcoord: 27..74
score: 1.
NoneNo IPR availableunknownCoilCoilcoord: 45..80
scor
NoneNo IPR availablePANTHERPTHR33878FAMILY NOT NAMEDcoord: 2..80
score: 9.0
NoneNo IPR availablePANTHERPTHR33878:SF2SUBFAMILY NOT NAMEDcoord: 2..80
score: 9.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G046230Bhi04G001317Wax gourdcuwgoB588
Csa6G046230Carg15855Silver-seed gourdcarcuB0066
Csa6G046230Carg01673Silver-seed gourdcarcuB0850
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G046230Cucumber (Gy14) v2cgybcuB282
Csa6G046230Melon (DHL92) v3.6.1cumedB456
Csa6G046230Watermelon (97103) v2cuwmbB488
Csa6G046230Cucumber (Gy14) v1cgycuB511
Csa6G046230Cucurbita maxima (Rimu)cmacuB308
Csa6G046230Cucurbita maxima (Rimu)cmacuB767
Csa6G046230Cucurbita moschata (Rifu)cmocuB297
Csa6G046230Cucurbita moschata (Rifu)cmocuB760
Csa6G046230Melon (DHL92) v3.5.1cumeB474
Csa6G046230Watermelon (Charleston Gray)cuwcgB497
Csa6G046230Watermelon (97103) v1cuwmB457
Csa6G046230Cucurbita pepo (Zucchini)cpecuB197
Csa6G046230Cucurbita pepo (Zucchini)cpecuB459
Csa6G046230Bottle gourd (USVL1VR-Ls)culsiB478