Carg00253 (gene) Silver-seed gourd

Overview
NameCarg00253
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionLOB domain-containing protein 33-like
LocationCucurbita_argyrosperma_scaffold_001 : 1359955 .. 1360684 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTGCGCAGCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTTGTTTCTCGATCCTCTAAACATTTAGACACCTCATGGGTTTTTAAAATGTTTTTAAATCTTTCTGTTGCAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGAAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCCTTGGGTTCTGCCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA

mRNA sequence

ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTGCGCAGCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGAAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCCTTGGGTTCTGCCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA

Coding sequence (CDS)

ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTGCGCAGCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGAAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCCTTGGGTTCTGCCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA

Protein sequence

MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLCLGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG
Homology
[Close]
BLAST of Carg00253 vs. NCBI nr
Match: XP_022957254.1 (LOB domain-containing protein 33-like [Cucurbita moschata])

HSP 1 Score: 390.6 bits (1002), Expect = 3.5e-105
Identity = 208/218 (95.41%), Postives = 211/218 (96.79%), Query Frame = 0 

Query: 1   MTVLNSYDXXXXXXXXXXXXXXXXKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MTVLNSYD   XXXXXXXXXXXXXKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYD---XXXXXXXXXXXXXKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAIS VENPFIEMNDFGMNSNHCQNELPSQLLPY+TSDDVQKDDQMISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 219
           LGEKDGG GFCHSNHVVETSGF VSV+ENFG YPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 215

[Close]
BLAST of Carg00253 vs. NCBI nr
Match: XP_023006079.1 (LOB domain-containing protein 33-like [Cucurbita maxima])

HSP 1 Score: 388.3 bits (996), Expect = 1.8e-104
Identity = 208/218 (95.41%), Postives = 209/218 (95.87%), Query Frame = 0 

Query: 1   MTVLNSYDXXXXXXXXXXXXXXXXKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           M VLNS+DXXXXXXXXXXXXXXXXKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MAVLNSFDXXXXXXXXXXXXXXXXKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVRSQAAITVTYEALERMRDPA GCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAIS VENPFIEMNDFGMNSNHCQNELPSQLLPYQT DD QKDD MISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180

Query: 181 LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 219
           LGEKDGG GFCHSNHVV TSGFHVSVDENFG YPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 218

[Close]
BLAST of Carg00253 vs. NCBI nr
Match: XP_023548244.1 (LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 361.7 bits (927), Expect = 1.8e-96
Identity = 204/223 (91.48%), Postives = 205/223 (91.93%), Query Frame = 0 

Query: 1   MTVLNSYD---XXXXXXXXXXXXXXXXKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF 60
           MTVLNSYD   XXXXXXXXXXXXXXXXKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF
Sbjct: 1   MTVLNSYDXXXXXXXXXXXXXXXXXXXKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF 60

Query: 61  GASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQIL 120
           GASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCV HIFALQQEVASLQEEIQIL
Sbjct: 61  GASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVFHIFALQQEVASLQEEIQIL 120

Query: 121 GTQIANLLTTGAAISEVENPFIEMN--DFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMI 180
           GTQIAN LTTGAAIS VENPFIEMN  DFGMNSNH QN    QLLPYQTSD VQKDDQMI
Sbjct: 121 GTQIANFLTTGAAISAVENPFIEMNDYDFGMNSNHSQN----QLLPYQTSDGVQKDDQMI 180

Query: 181 SPLLCLGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 219
           SPLLCLGEKDGG GFCHSNHVVE SGF VSV+ENFG YPWILG
Sbjct: 181 SPLLCLGEKDGGFGFCHSNHVVERSGFDVSVEENFGGYPWILG 219

[Close]
BLAST of Carg00253 vs. NCBI nr
Match: XP_004147712.1 (PREDICTED: LOB domain-containing protein 33 [Cucumis sativus] >KGN50569.1 hypothetical protein Csa_5G182740 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 8.8e-72
Identity = 147/205 (71.71%), Postives = 167/205 (81.46%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H+RS AAITV YE
Sbjct: 17  KFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHIRSHAAITVAYE 76

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVENPFI----- 144
           ALERMRDP  GCV HIFALQQEVASLQEEI+ILG+QIAN  TTG +I+ V+NPFI     
Sbjct: 77  ALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATTGGSIAAVDNPFIDQVQV 136

Query: 145 --EMNDFG-MNSNHCQNELPSQLLPYQTSDDVQKDD---QMISPLLCLGEKDGGLGFCHS 204
             +M+ FG MN+N+ QNEL S+ LPYQ+ D+VQ D+   QMISPL CLGE+DG   F +S
Sbjct: 137 PQQMDGFGMMNTNYYQNELVSE-LPYQSFDNVQNDNTTAQMISPLFCLGEEDGVFEFSNS 196

Query: 205 NHVVETSGFHVSVDENFGAYPWILG 219
           N+VVE+S F VSV+EN   YPWI+G
Sbjct: 197 NNVVESSAFDVSVEENCIGYPWIVG 220

[Close]
BLAST of Carg00253 vs. NCBI nr
Match: XP_008461694.1 (PREDICTED: LOB domain-containing protein 33-like [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 4.4e-71
Identity = 147/206 (71.36%), Postives = 166/206 (80.58%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H RS AAITV YE
Sbjct: 17  KFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYE 76

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVENPFI----- 144
           ALERMRDP  GC+ HIFALQQEV SLQEEI+ILG+QIANL TTG +I+ VENPFI     
Sbjct: 77  ALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQ 136

Query: 145 ---EMNDFGM-NSNHCQNELPSQLLPYQTSDDVQKDD--QMISPLLCLGEKDGGLGFCHS 204
              +M+ F M N+N+ QNEL S+ LPYQ+ D++Q D+  QMISPL CLGE+DG   FC+S
Sbjct: 137 VSQQMDGFEMTNTNYYQNELASE-LPYQSFDNIQNDNTAQMISPLFCLGEEDGVFEFCNS 196

Query: 205 NHVVE-TSGFHVSVDENFGAYPWILG 219
           N+VVE TS F VSV+EN   YPWI+G
Sbjct: 197 NNVVESTSAFDVSVEENCVGYPWIVG 221

[Close]
BLAST of Carg00253 vs. TAIR10
Match: AT5G06080.1 (LOB domain-containing protein 33)

HSP 1 Score: 151.0 bits (380), Expect = 8.6e-37
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKC+  CVF+P FSY++A+SHFAAVHKVFGASNVSK LLHLP H R+ AAIT++YE
Sbjct: 12  KFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQRNIAAITISYE 71

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVEN 137
           AL RMRDP  GCV HIFAL Q+V +LQEEI+ LG+Q+ N   +    S++ N
Sbjct: 72  ALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQLNN 123

[Close]
BLAST of Carg00253 vs. TAIR10
Match: AT3G58190.1 (lateral organ boundaries-domain 29)

HSP 1 Score: 131.0 bits (328), Expect = 9.2e-31
Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKC+  CVFAP F +++  SHFAA+HKVFGASN SKLL HLP+  R +AAIT++YE
Sbjct: 16  KFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAITISYE 75

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIA-NLLTTGAAISEVENPF 139
           A  R++DP  GCV HIFALQQ+V +LQ E++IL  Q A +++   +  SE  N +
Sbjct: 76  AQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSPTSENPNSY 130

[Close]
BLAST of Carg00253 vs. TAIR10
Match: AT2G45420.1 (LOB domain-containing protein 18)

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-30
Identity = 61/100 (61.00%), Postives = 77/100 (77.00%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKC   C+FAP F  ++ +++FAAVHKVFGASNVSKLLLH+P+H RS A +T+ YE
Sbjct: 42  KFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTICYE 101

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANL 125
           A  R+RDP  GCV HIFALQQ+V +LQ E+  L   +A+L
Sbjct: 102 AQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]
BLAST of Carg00253 vs. TAIR10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 124.4 bits (311), Expect = 8.6e-29
Identity = 76/182 (41.76%), Postives = 104/182 (57.14%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRR+C   CVFAP F +++  SHFAA+H+VFGASN SKLL HLPM  R +AA T+ YE
Sbjct: 12  KFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYYE 71

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVENPFIEMNDF 144
           A  R +DP  GCV HIF+LQQ+V +LQ +++IL  Q         ++  +++P IE    
Sbjct: 72  AQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQ------SMMAIDSPSIE---- 131

Query: 145 GMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLCLGEKDGGL----GFCHSNHVVETS 203
             N N+ Q+  P  L   Q S D+       S   C  E++  L      C+    +ET+
Sbjct: 132 --NPNYYQDTKPQYL---QESHDLHHHHLTTSN--CQTEQNSDLKNIMTSCYHQMEIETT 176

[Close]
BLAST of Carg00253 vs. TAIR10
Match: AT4G00210.1 (LOB domain-containing protein 31)

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-28
Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKC   CVFAP F   E TSHF AVHKVFGASN SKLL+ +P   R  A +T+TYE
Sbjct: 16  KFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTYE 75

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANL 125
           AL R+RDP  GCV HIFALQ +V +LQ E+  + TQ++ L
Sbjct: 76  ALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTL 115

[Close]
BLAST of Carg00253 vs. Swiss-Prot
Match: sp|Q9LHS8|LBD33_ARATH (LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-35
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKC+  CVF+P FSY++A+SHFAAVHKVFGASNVSK LLHLP H R+ AAIT++YE
Sbjct: 12  KFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQRNIAAITISYE 71

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVEN 137
           AL RMRDP  GCV HIFAL Q+V +LQEEI+ LG+Q+ N   +    S++ N
Sbjct: 72  ALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQLNN 123

[Close]
BLAST of Carg00253 vs. Swiss-Prot
Match: sp|Q9M2J7|LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-29
Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKC+  CVFAP F +++  SHFAA+HKVFGASN SKLL HLP+  R +AAIT++YE
Sbjct: 16  KFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAITISYE 75

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIA-NLLTTGAAISEVENPF 139
           A  R++DP  GCV HIFALQQ+V +LQ E++IL  Q A +++   +  SE  N +
Sbjct: 76  AQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSPTSENPNSY 130

[Close]
BLAST of Carg00253 vs. Swiss-Prot
Match: sp|O22131|LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 61/100 (61.00%), Postives = 77/100 (77.00%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKC   C+FAP F  ++ +++FAAVHKVFGASNVSKLLLH+P+H RS A +T+ YE
Sbjct: 42  KFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTICYE 101

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANL 125
           A  R+RDP  GCV HIFALQQ+V +LQ E+  L   +A+L
Sbjct: 102 AQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]
BLAST of Carg00253 vs. Swiss-Prot
Match: sp|Q9SLB6|LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 76/182 (41.76%), Postives = 104/182 (57.14%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRR+C   CVFAP F +++  SHFAA+H+VFGASN SKLL HLPM  R +AA T+ YE
Sbjct: 12  KFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYYE 71

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVENPFIEMNDF 144
           A  R +DP  GCV HIF+LQQ+V +LQ +++IL  Q         ++  +++P IE    
Sbjct: 72  AQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQ------SMMAIDSPSIE---- 131

Query: 145 GMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLCLGEKDGGL----GFCHSNHVVETS 203
             N N+ Q+  P  L   Q S D+       S   C  E++  L      C+    +ET+
Sbjct: 132 --NPNYYQDTKPQYL---QESHDLHHHHLTTSN--CQTEQNSDLKNIMTSCYHQMEIETT 176

[Close]
BLAST of Carg00253 vs. Swiss-Prot
Match: sp|Q5UG13|LBD_ORYSJ (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.0e-27
Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKC   CVFAP F +++  +HFAA+HKVFGASNVSKLL HLP+  R +AA+T++YE
Sbjct: 12  KFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAVTISYE 71

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQIL 118
           A  R+RDP  GCV HIFALQQ+V +LQ ++  L
Sbjct: 72  AQARLRDPIYGCVAHIFALQQQVMTLQAQLASL 104

[Close]
BLAST of Carg00253 vs. TrEMBL
Match: tr|A0A0A0KNX8|A0A0A0KNX8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 5.8e-72
Identity = 147/205 (71.71%), Postives = 167/205 (81.46%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H+RS AAITV YE
Sbjct: 17  KFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHIRSHAAITVAYE 76

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVENPFI----- 144
           ALERMRDP  GCV HIFALQQEVASLQEEI+ILG+QIAN  TTG +I+ V+NPFI     
Sbjct: 77  ALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATTGGSIAAVDNPFIDQVQV 136

Query: 145 --EMNDFG-MNSNHCQNELPSQLLPYQTSDDVQKDD---QMISPLLCLGEKDGGLGFCHS 204
             +M+ FG MN+N+ QNEL S+ LPYQ+ D+VQ D+   QMISPL CLGE+DG   F +S
Sbjct: 137 PQQMDGFGMMNTNYYQNELVSE-LPYQSFDNVQNDNTTAQMISPLFCLGEEDGVFEFSNS 196

Query: 205 NHVVETSGFHVSVDENFGAYPWILG 219
           N+VVE+S F VSV+EN   YPWI+G
Sbjct: 197 NNVVESSAFDVSVEENCIGYPWIVG 220

[Close]
BLAST of Carg00253 vs. TrEMBL
Match: tr|A0A1S3CGM1|A0A1S3CGM1_CUCME (LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.9e-71
Identity = 147/206 (71.36%), Postives = 166/206 (80.58%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H RS AAITV YE
Sbjct: 17  KFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYE 76

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVENPFI----- 144
           ALERMRDP  GC+ HIFALQQEV SLQEEI+ILG+QIANL TTG +I+ VENPFI     
Sbjct: 77  ALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQ 136

Query: 145 ---EMNDFGM-NSNHCQNELPSQLLPYQTSDDVQKDD--QMISPLLCLGEKDGGLGFCHS 204
              +M+ F M N+N+ QNEL S+ LPYQ+ D++Q D+  QMISPL CLGE+DG   FC+S
Sbjct: 137 VSQQMDGFEMTNTNYYQNELASE-LPYQSFDNIQNDNTAQMISPLFCLGEEDGVFEFCNS 196

Query: 205 NHVVE-TSGFHVSVDENFGAYPWILG 219
           N+VVE TS F VSV+EN   YPWI+G
Sbjct: 197 NNVVESTSAFDVSVEENCVGYPWIVG 221

[Close]
BLAST of Carg00253 vs. TrEMBL
Match: tr|W9R256|W9R256_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025355 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.7e-39
Identity = 102/215 (47.44%), Postives = 124/215 (57.67%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKCS +C+FAP F YDEA SHFAAVHKVFGASNVSKLLLHLP+H RS AA T++YE
Sbjct: 12  KFLRRKCSSECIFAPYFCYDEAPSHFAAVHKVFGASNVSKLLLHLPVHNRSDAATTISYE 71

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAA------------IS 144
           AL RMRDP  GCV HIF LQQ++A LQEEI+ILG QIAN LT G A             S
Sbjct: 72  ALARMRDPIYGCVAHIFTLQQQIACLQEEIEILGNQIANNLTAGIASCGSSEATNXXXXS 131

Query: 145 EVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQM-----------ISPLLCL 204
            V    I   +  MNS + QN+   ++L  Q  +  + ++               P    
Sbjct: 132 NVNETQIFPQNDAMNSQYYQNQ--QEILLSQIGNSTENNNNQSGFDGHNMGVHFPPFYGW 191

Query: 205 GEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWI 217
           GE++     CH+        F  +  E FG  PW+
Sbjct: 192 GEENVP---CHTFSDPLRKLFEGTEQEKFGNSPWL 221

[Close]
BLAST of Carg00253 vs. TrEMBL
Match: tr|A0A2P5BAL0|A0A2P5BAL0_PARAD (Lateral organ boundaries domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_256100 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.5e-39
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKCS +C+FAP FSYDEA SHFAAVHKVFGASNVSKLLLHLP+H RS AA T++YE
Sbjct: 12  KFLRRKCSSECIFAPYFSYDEAASHFAAVHKVFGASNVSKLLLHLPLHNRSDAATTISYE 71

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAA 131
           AL RMRDP  GCV HIFALQQ+VA LQEEI+ILG QIAN +T G A
Sbjct: 72  ALARMRDPIYGCVAHIFALQQQVAYLQEEIEILGNQIANNVTAGLA 117

[Close]
BLAST of Carg00253 vs. TrEMBL
Match: tr|A0A2P5CX80|A0A2P5CX80_9ROSA (Lateral organ boundaries domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_269980 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 82/106 (77.36%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 25  KFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYE 84
           KFLRRKCS +C+FAP FSYDEA SHFAAVHKVFGASNVSKLLLHLP+H RS AA T++YE
Sbjct: 12  KFLRRKCSSECIFAPYFSYDEAASHFAAVHKVFGASNVSKLLLHLPLHNRSDAATTISYE 71

Query: 85  ALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAA 131
           AL RMRDP  GCV HIFALQQ+VA LQEEI+I+G QIAN +T G A
Sbjct: 72  ALARMRDPIYGCVAHIFALQQQVAYLQEEIEIIGNQIANNVTAGLA 117

The following BLAST results are available for this feature:
BLAST of Carg00253 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957254.13.5e-10595.41LOB domain-containing protein 33-like [Cucurbita moschata][more]
XP_023006079.11.8e-10495.41LOB domain-containing protein 33-like [Cucurbita maxima][more]
XP_023548244.11.8e-9691.48LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo][more]
XP_004147712.18.8e-7271.71PREDICTED: LOB domain-containing protein 33 [Cucumis sativus] >KGN50569.1 hypoth... [more]
XP_008461694.14.4e-7171.36PREDICTED: LOB domain-containing protein 33-like [Cucumis melo][more]
BLAST of Carg00253 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G06080.18.6e-3765.18LOB domain-containing protein 33[more]
AT3G58190.19.2e-3156.52lateral organ boundaries-domain 29[more]
AT2G45420.11.6e-3061.00LOB domain-containing protein 18[more]
AT2G42440.18.6e-2941.76Lateral organ boundaries (LOB) domain family protein[more]
AT4G00210.13.3e-2861.00LOB domain-containing protein 31[more]
BLAST of Carg00253 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LHS8|LBD33_ARATH1.5e-3565.18LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 S... [more]
sp|Q9M2J7|LBD29_ARATH1.7e-2956.52LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S... [more]
sp|O22131|LBD18_ARATH2.8e-2961.00LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S... [more]
sp|Q9SLB6|LBD17_ARATH1.6e-2741.76LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S... [more]
sp|Q5UG13|LBD_ORYSJ2.0e-2762.37LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C... [more]
BLAST of Carg00253 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KNX8|A0A0A0KNX8_CUCSA5.8e-7271.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=4 SV=1[more]
tr|A0A1S3CGM1|A0A1S3CGM1_CUCME2.9e-7171.36LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE... [more]
tr|W9R256|W9R256_9ROSA1.7e-3947.44Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025355 PE=4 SV=1[more]
tr|A0A2P5BAL0|A0A2P5BAL0_PARAD8.5e-3978.30Lateral organ boundaries domain containing protein OS=Parasponia andersonii OX=3... [more]
tr|A0A2P5CX80|A0A2P5CX80_9ROSA1.4e-3877.36Lateral organ boundaries domain containing protein OS=Trema orientalis OX=63057 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00253-RACarg00253-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 100..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR31529FAMILY NOT NAMEDcoord: 13..159
NoneNo IPR availablePANTHERPTHR31529:SF12LOB DOMAIN-CONTAINING PROTEIN 14-RELATEDcoord: 13..159
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 20..116
e-value: 1.9E-32
score: 111.6
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 19..121
score: 21.318

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00253Cla003994Watermelon (97103) v1carwmB0663
Carg00253Csa5G182740Cucumber (Chinese Long) v2carcuB0694
Carg00253MELO3C023880Melon (DHL92) v3.5.1carmeB0660
Carg00253ClCG07G003530Watermelon (Charleston Gray)carwcgB0651
Carg00253CSPI05G09830Wild cucumber (PI 183967)carcpiB0706
Carg00253Cucsa.165150Cucumber (Gy14) v1carcgyB0746
Carg00253CmaCh04G002020Cucurbita maxima (Rimu)carcmaB0949
Carg00253CmaCh04G011700Cucurbita maxima (Rimu)carcmaB0948
Carg00253CmoCh04G002030Cucurbita moschata (Rifu)carcmoB0924
Carg00253CmoCh04G012400Cucurbita moschata (Rifu)carcmoB0923
Carg00253Lsi04G009000Bottle gourd (USVL1VR-Ls)carlsiB608
Carg00253Cp4.1LG01g10860Cucurbita pepo (Zucchini)carcpeB0938
Carg00253Cp4.1LG01g04910Cucurbita pepo (Zucchini)carcpeB0939
Carg00253CsGy5G007190Cucumber (Gy14) v2carcgybB0670
Carg00253MELO3C023880.2Melon (DHL92) v3.6.1carmedB0670
Carg00253CsaV3_5G008280Cucumber (Chinese Long) v3carcucB0708
Carg00253Cla97C07G131820Watermelon (97103) v2carwmbB0700
Carg00253Bhi06G000865Wax gourdcarwgoB0780
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00253Carg18333Silver-seed gourdcarcarB099
The following block(s) are covering this gene:
GeneOrganismBlock
Carg00253Silver-seed gourdcarcarB025
Carg00253Silver-seed gourdcarcarB304
Carg00253Silver-seed gourdcarcarB360
Carg00253Cucurbita maxima (Rimu)carcmaB0940
Carg00253Watermelon (97103) v2carwmbB0689
Carg00253Watermelon (97103) v2carwmbB0695
Carg00253Wax gourdcarwgoB0781
Carg00253Wax gourdcarwgoB0782
Carg00253Wax gourdcarwgoB0784