CmaCh04G002020 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G002020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	LOB domain-containing protein 29
Location	Cma_Chr04 : 958291 .. 959115 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGCGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACGTCCGAAGCCACGCTGCGATCACGGTTTCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCACGTTGCAACAAGAGGTTGTTCTAAAACTTTAAAACTTAAGTCGATGATTAACGCTTTCTTAGCCTATCAAATCTTTCTCTTGCAGATCATGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCACCGATATGGACAACGTTGCAGTGGTCGAGAATCCATCTATGGAGCTTCAAGTTTCGAAACAGTTGAATGAATTGGTGATGAACACAAATGATTATCAAAACGAGTTGCTCTCTCAACTGCCGACTTTTGATGAAGTCCAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATTGGGGAAGAAGAAGGGTTTTTCGGGTGCAACCCAAATAATGCTATGGAGAATTCAGCCTTTGATGTATCAGTTGATGAAAACTTTGCTTATCTATGGTAGTTGATCTTGATGTATCCATTTGGTTTAGAATGACGAAATCTAAATAATTGAATGATTTATAATCCGAATATGATCGACAATGTAAAGGCTAAAACAAGTCAAATCATTC

mRNA sequence

ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGCGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACGTCCGAAGCCACGCTGCGATCACGGTTTCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCACGTTGCAACAAGAGATCATGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCACCGATATGGACAACGTTGCAGTGGTCGAGAATCCATCTATGGAGCTTCAAGTTTCGAAACAGTTGAATGAATTGGTGATGAACACAAATGATTATCAAAACGAGTTGCTCTCTCAACTGCCGACTTTTGATGAAGTCCAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATTGGGGAAGAAGAAGGGTTTTTCGGGTGCAACCCAAATAATGCTATGGAGAATTCAGCCTTTGATGTATCAGTTGATGAAAACTTTGCTTATCTATGGTAGTTGATCTTGATGTATCCATTTGGTTTAGAATGACGAAATCTAAATAATTGAATGATTTATAATCCGAATATGATCGACAATGTAAAGGCTAAAACAAGTCAAATCATTC

Coding sequence (CDS)

ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGCGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACGTCCGAAGCCACGCTGCGATCACGGTTTCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCACGTTGCAACAAGAGATCATGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCACCGATATGGACAACGTTGCAGTGGTCGAGAATCCATCTATGGAGCTTCAAGTTTCGAAACAGTTGAATGAATTGGTGATGAACACAAATGATTATCAAAACGAGTTGCTCTCTCAACTGCCGACTTTTGATGAAGTCCAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATTGGGGAAGAAGAAGGGTTTTTCGGGTGCAACCCAAATAATGCTATGGAGAATTCAGCCTTTGATGTATCAGTTGATGAAAACTTTGCTTATCTATGGTAG

Protein sequence

MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLFCIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW

Homology

[Close]

BLAST of CmaCh04G002020 vs. Swiss-Prot
Match: LBD33_ARATH (LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.7e-42
Identity = 86/146 (58.90%), Postives = 113/146 (77.40%), Query Frame = 1


Query: 12  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           +S  SSCGACKFLRRKC+  CVF+P+F+Y++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 72  SHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVV 131
           + AAIT+SYEAL RMRDP YGCVAHIF L Q++++LQEEI+ LGSQ+ NF+    N + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 132 ENPSMELQVSKQLNELVMNTNDYQNE 158
            N      + + +N++ M T ++ +E
Sbjct: 122 NN------IPEFVNQMTMATTNFVDE 141

[Close]

BLAST of CmaCh04G002020 vs. Swiss-Prot
Match: LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-35
Identity = 76/128 (59.38%), Postives = 97/128 (75.78%), Query Frame = 1


Query: 8   SSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLP 67
           +SSSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 68  MHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDN 127
           +  R  AAIT+SYEA  R++DP YGCV+HIF LQQ++++LQ E+++L  Q A      D+
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 128 VAVVENPS 136
               ENP+
Sbjct: 122 -PTSENPN 128

[Close]

BLAST of CmaCh04G002020 vs. Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2)

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-32
Identity = 66/112 (58.93%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 9   SSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPM 68
           SS       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+P+
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 69  HVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 121
           H RS A +T+ YEA  R+RDP YGCVAHIF LQQ++++LQ E+  L + +A+
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of CmaCh04G002020 vs. Swiss-Prot
Match: LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.7e-32
Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 1


Query: 12  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           + S S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 72  SHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVV 131
             AA T+ YEA  R +DP YGCV+HIF+LQQ++++LQ ++++L  Q       +D+ + +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPS-I 121

Query: 132 ENPS-------MELQVSKQLNELVMNTNDYQNELLSQL 163
           ENP+         LQ S  L+   + T++ Q E  S L
Sbjct: 122 ENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDL 158

[Close]

BLAST of CmaCh04G002020 vs. Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.5e-31
Identity = 62/119 (52.10%), Postives = 91/119 (76.47%), Query Frame = 1


Query: 5   TSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLL 64
           +S + +++ + S CGACKFLRRKC++ C+FAP+F+ ++  + FAA+HKVFGASNVSKLLL
Sbjct: 3   SSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLL 62

Query: 65  HLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTT 124
           ++P+H R  A +T++YEA  R+ DP YGCV+HIF LQQ++  LQ ++  + +QIA   T
Sbjct: 63  NVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQT 121

[Close]

BLAST of CmaCh04G002020 vs. TrEMBL
Match: A0A0A0KNX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182740 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.1e-73
Identity = 155/222 (69.82%), Postives = 185/222 (83.33%), Query Frame = 1


Query: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGL     +SS+SS+SCGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGL-----NSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLP H+RSHAAITV+YEALERMRDPTYGCVAHIF LQQE+ SLQEEI++LGSQIAN
Sbjct: 61  KLLLHLPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIAN 120

Query: 121 FTTDMDNVAVVENPSM-ELQVSKQLNEL-VMNTNDYQNELLSQLP--TFDEVQIND--AQ 180
           F T   ++A V+NP + ++QV +Q++   +MNTN YQNEL+S+LP  +FD VQ ++  AQ
Sbjct: 121 FATTGGSIAAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQ 180

Query: 181 MISPLFCIGEEEGFFG-CNPNNAMENSAFDVSVDEN-FAYLW 215
           MISPLFC+GEE+G F   N NN +E+SAFDVSV+EN   Y W
Sbjct: 181 MISPLFCLGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPW 217

[Close]

BLAST of CmaCh04G002020 vs. TrEMBL
Match: B9HT79_POPTR (LOB domain protein 33 OS=Populus trichocarpa GN=POPTR_0010s20800g PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.8e-43
Identity = 104/184 (56.52%), Postives = 127/184 (69.02%), Query Frame = 1


Query: 16  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSHAA 75
           SSCGACKFLRRKC++ CVFAP+F YD+A +HFAAVHKVFGASNVSKLLLHLP+H R  AA
Sbjct: 6   SSCGACKFLRRKCTSECVFAPYFCYDQAAAHFAAVHKVFGASNVSKLLLHLPVHNRGDAA 65

Query: 76  ITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDM---DNVAVVE 135
           IT+SYEAL RMRDP YGCVAHIF LQQ++ SLQEEI++L +Q+A+ T  +    +   + 
Sbjct: 66  ITISYEALARMRDPIYGCVAHIFALQQQVASLQEEIEILENQMASLTVGVAGFGSSPTIS 125

Query: 136 NPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEV---QINDAQMISPLFCI-GEEEGF 193
           NP+ E+  S Q +   MNT  YQN   +QL         Q  D QM  PL  + G E+  
Sbjct: 126 NPNCEMLFSFQQD--AMNTQYYQNPQSAQLNHSGYTTGNQTFDGQMNVPLTPLYGWEDQD 185

[Close]

BLAST of CmaCh04G002020 vs. TrEMBL
Match: A0A061FTN7_THECC (LOB domain-containing protein 29 OS=Theobroma cacao GN=TCM_042730 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.0e-42
Identity = 103/173 (59.54%), Postives = 124/173 (71.68%), Query Frame = 1


Query: 16  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSHAA 75
           SSCGACKFLRRKC++ CVFAP+F YDEA SHFAAVHKVFGASNVSKLLLHLPMH RS AA
Sbjct: 6   SSCGACKFLRRKCTSECVFAPYFCYDEAASHFAAVHKVFGASNVSKLLLHLPMHNRSDAA 65

Query: 76  ITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDM----DNVAVV 135
           +T+SYEAL RMRDP YGCVAHIF LQQ++ +LQEEI++L +Q+AN   D      N    
Sbjct: 66  VTISYEALARMRDPIYGCVAHIFALQQQVANLQEEIEILINQMANHAADQVPSCGNTQAA 125

Query: 136 ENPSMELQVSKQLNELVMNTNDYQNELLSQLPT-----FDEVQINDAQMISPL 180
             P  ++Q +  L+E + +T  YQ+E  + LPT         QI DAQ+  PL
Sbjct: 126 TYPDGKIQFA-SLHETI-STVYYQDE-QAALPTNHPGLLTGNQILDAQLCEPL 175

[Close]

BLAST of CmaCh04G002020 vs. TrEMBL
Match: D7TLQ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02060 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.3e-42
Identity = 107/210 (50.95%), Postives = 134/210 (63.81%), Query Frame = 1


Query: 16  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSHAA 75
           +SCGACKFLRR+C++ CVFAP F YD+A SHFAAVHKVFGASNVSKLLLHLP+H R  AA
Sbjct: 6   ASCGACKFLRRRCTSDCVFAPHFCYDQAASHFAAVHKVFGASNVSKLLLHLPLHNRGEAA 65

Query: 76  ITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDM---DNVAVVE 135
           IT+SYEAL RMRDP YGCVAHIF LQQ++ +LQEEI++LG+ +A F  D    ++     
Sbjct: 66  ITISYEALARMRDPVYGCVAHIFALQQQVANLQEEIEILGNHMATFAPDTVTGEHYGATN 125

Query: 136 NPSMELQVSKQLNELVMNTNDYQNE---LLSQLPTFDEVQINDAQMIS---PLFCIGEEE 195
           N +  LQ S Q + L  N  DY N+   LLS        Q  D+ M     PL+  G E 
Sbjct: 126 NLNTGLQFSSQTDTL--NMQDYLNQQALLLSHAGNATANQAFDSLMNEQPPPLY--GWEN 185

Query: 196 GFFGCNPNNAMENSAFDVSVDENFA--YLW 215
             F C+ +       F+  +D+ F+  Y W
Sbjct: 186 QNFFCDSDATPLERLFE-GIDQEFSAYYPW 210

[Close]

BLAST of CmaCh04G002020 vs. TrEMBL
Match: W9R256_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025355 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.7e-42
Identity = 101/168 (60.12%), Postives = 118/168 (70.24%), Query Frame = 1


Query: 16  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSHAA 75
           SSCGACKFLRRKCS+ C+FAP+F YDEA SHFAAVHKVFGASNVSKLLLHLP+H RS AA
Sbjct: 6   SSCGACKFLRRKCSSECIFAPYFCYDEAPSHFAAVHKVFGASNVSKLLLHLPVHNRSDAA 65

Query: 76  ITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVVENPS 135
            T+SYEAL RMRDP YGCVAHIFTLQQ+I  LQEEI++LG+QIAN  T     +   + +
Sbjct: 66  TTISYEALARMRDPIYGCVAHIFTLQQQIACLQEEIEILGNQIANNLT-AGIASCGSSEA 125

Query: 136 MELQVSKQLNEL-------VMNTNDYQNE---LLSQLPTFDEVQINDA 174
                S  +NE         MN+  YQN+   LLSQ+    E   N +
Sbjct: 126 TNNNNSSNVNETQIFPQNDAMNSQYYQNQQEILLSQIGNSTENNNNQS 172

[Close]

BLAST of CmaCh04G002020 vs. TAIR10
Match: AT5G06080.1 (AT5G06080.1 LOB domain-containing protein 33)

HSP 1 Score: 172.9 bits (437), Expect = 2.1e-43
Identity = 86/146 (58.90%), Postives = 113/146 (77.40%), Query Frame = 1


Query: 12  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           +S  SSCGACKFLRRKC+  CVF+P+F+Y++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 72  SHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVV 131
           + AAIT+SYEAL RMRDP YGCVAHIF L Q++++LQEEI+ LGSQ+ NF+    N + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 132 ENPSMELQVSKQLNELVMNTNDYQNE 158
            N      + + +N++ M T ++ +E
Sbjct: 122 NN------IPEFVNQMTMATTNFVDE 141

[Close]

BLAST of CmaCh04G002020 vs. TAIR10
Match: AT3G58190.1 (AT3G58190.1 lateral organ boundaries-domain 29)

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-36
Identity = 76/128 (59.38%), Postives = 97/128 (75.78%), Query Frame = 1


Query: 8   SSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLP 67
           +SSSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 68  MHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDN 127
           +  R  AAIT+SYEA  R++DP YGCV+HIF LQQ++++LQ E+++L  Q A      D+
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 128 VAVVENPS 136
               ENP+
Sbjct: 122 -PTSENPN 128

[Close]

BLAST of CmaCh04G002020 vs. TAIR10
Match: AT2G45420.1 (AT2G45420.1 LOB domain-containing protein 18)

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-33
Identity = 66/112 (58.93%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 9   SSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPM 68
           SS       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+P+
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 69  HVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 121
           H RS A +T+ YEA  R+RDP YGCVAHIF LQQ++++LQ E+  L + +A+
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of CmaCh04G002020 vs. TAIR10
Match: AT2G42440.1 (AT2G42440.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 138.7 bits (348), Expect = 4.3e-33
Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 1


Query: 12  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           + S S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 72  SHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVV 131
             AA T+ YEA  R +DP YGCV+HIF+LQQ++++LQ ++++L  Q       +D+ + +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPS-I 121

Query: 132 ENPS-------MELQVSKQLNELVMNTNDYQNELLSQL 163
           ENP+         LQ S  L+   + T++ Q E  S L
Sbjct: 122 ENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDL 158

[Close]

BLAST of CmaCh04G002020 vs. TAIR10
Match: AT2G42430.1 (AT2G42430.1 lateral organ boundaries-domain 16)

HSP 1 Score: 135.6 bits (340), Expect = 3.7e-32
Identity = 62/119 (52.10%), Postives = 91/119 (76.47%), Query Frame = 1


Query: 5   TSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLL 64
           +S + +++ + S CGACKFLRRKC++ C+FAP+F+ ++  + FAA+HKVFGASNVSKLLL
Sbjct: 3   SSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLL 62

Query: 65  HLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTT 124
           ++P+H R  A +T++YEA  R+ DP YGCV+HIF LQQ++  LQ ++  + +QIA   T
Sbjct: 63  NVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQT 121

[Close]

BLAST of CmaCh04G002020 vs. NCBI nr
Match: gi|449459956|ref|XP_004147712.1| (PREDICTED: LOB domain-containing protein 33 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 3.1e-73
Identity = 155/222 (69.82%), Postives = 185/222 (83.33%), Query Frame = 1


Query: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGL     +SS+SS+SCGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGL-----NSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLP H+RSHAAITV+YEALERMRDPTYGCVAHIF LQQE+ SLQEEI++LGSQIAN
Sbjct: 61  KLLLHLPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIAN 120

Query: 121 FTTDMDNVAVVENPSM-ELQVSKQLNEL-VMNTNDYQNELLSQLP--TFDEVQIND--AQ 180
           F T   ++A V+NP + ++QV +Q++   +MNTN YQNEL+S+LP  +FD VQ ++  AQ
Sbjct: 121 FATTGGSIAAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQ 180

Query: 181 MISPLFCIGEEEGFFG-CNPNNAMENSAFDVSVDEN-FAYLW 215
           MISPLFC+GEE+G F   N NN +E+SAFDVSV+EN   Y W
Sbjct: 181 MISPLFCLGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPW 217

[Close]

BLAST of CmaCh04G002020 vs. NCBI nr
Match: gi|659123494|ref|XP_008461694.1| (PREDICTED: LOB domain-containing protein 33-like [Cucumis melo])

HSP 1 Score: 281.2 bits (718), Expect = 1.5e-72
Identity = 156/223 (69.96%), Postives = 183/223 (82.06%), Query Frame = 1


Query: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGL     +SS++SSSCGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGL-----NSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLP H RSHAAITV+YEALERMRDPTYGC+AHIF LQQE++SLQEEI++LGSQIAN
Sbjct: 61  KLLLHLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIAN 120

Query: 121 FTTDMDNVAVVENPSME--LQVSKQLNELVM-NTNDYQNELLSQLP--TFDEVQ-INDAQ 180
             T   ++A VENP ++  +QVS+Q++   M NTN YQNEL S+LP  +FD +Q  N AQ
Sbjct: 121 LATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQ 180

Query: 181 MISPLFCIGEEEGFFG-CNPNNAMEN-SAFDVSVDEN-FAYLW 215
           MISPLFC+GEE+G F  CN NN +E+ SAFDVSV+EN   Y W
Sbjct: 181 MISPLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPW 218

[Close]

BLAST of CmaCh04G002020 vs. NCBI nr
Match: gi|224112721|ref|XP_002316271.1| (LOB domain protein 33 [Populus trichocarpa])

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 104/184 (56.52%), Postives = 127/184 (69.02%), Query Frame = 1


Query: 16  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSHAA 75
           SSCGACKFLRRKC++ CVFAP+F YD+A +HFAAVHKVFGASNVSKLLLHLP+H R  AA
Sbjct: 6   SSCGACKFLRRKCTSECVFAPYFCYDQAAAHFAAVHKVFGASNVSKLLLHLPVHNRGDAA 65

Query: 76  ITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDM---DNVAVVE 135
           IT+SYEAL RMRDP YGCVAHIF LQQ++ SLQEEI++L +Q+A+ T  +    +   + 
Sbjct: 66  ITISYEALARMRDPIYGCVAHIFALQQQVASLQEEIEILENQMASLTVGVAGFGSSPTIS 125

Query: 136 NPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEV---QINDAQMISPLFCI-GEEEGF 193
           NP+ E+  S Q +   MNT  YQN   +QL         Q  D QM  PL  + G E+  
Sbjct: 126 NPNCEMLFSFQQD--AMNTQYYQNPQSAQLNHSGYTTGNQTFDGQMNVPLTPLYGWEDQD 185

[Close]

BLAST of CmaCh04G002020 vs. NCBI nr
Match: gi|590563089|ref|XP_007009269.1| (LOB domain-containing protein 29 [Theobroma cacao])

HSP 1 Score: 180.6 bits (457), Expect = 2.8e-42
Identity = 103/173 (59.54%), Postives = 124/173 (71.68%), Query Frame = 1


Query: 16  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSHAA 75
           SSCGACKFLRRKC++ CVFAP+F YDEA SHFAAVHKVFGASNVSKLLLHLPMH RS AA
Sbjct: 6   SSCGACKFLRRKCTSECVFAPYFCYDEAASHFAAVHKVFGASNVSKLLLHLPMHNRSDAA 65

Query: 76  ITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDM----DNVAVV 135
           +T+SYEAL RMRDP YGCVAHIF LQQ++ +LQEEI++L +Q+AN   D      N    
Sbjct: 66  VTISYEALARMRDPIYGCVAHIFALQQQVANLQEEIEILINQMANHAADQVPSCGNTQAA 125

Query: 136 ENPSMELQVSKQLNELVMNTNDYQNELLSQLPT-----FDEVQINDAQMISPL 180
             P  ++Q +  L+E + +T  YQ+E  + LPT         QI DAQ+  PL
Sbjct: 126 TYPDGKIQFA-SLHETI-STVYYQDE-QAALPTNHPGLLTGNQILDAQLCEPL 175

[Close]

BLAST of CmaCh04G002020 vs. NCBI nr
Match: gi|225449430|ref|XP_002277994.1| (PREDICTED: LOB domain-containing protein 33 [Vitis vinifera])

HSP 1 Score: 179.9 bits (455), Expect = 4.8e-42
Identity = 107/210 (50.95%), Postives = 134/210 (63.81%), Query Frame = 1


Query: 16  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSHAA 75
           +SCGACKFLRR+C++ CVFAP F YD+A SHFAAVHKVFGASNVSKLLLHLP+H R  AA
Sbjct: 6   ASCGACKFLRRRCTSDCVFAPHFCYDQAASHFAAVHKVFGASNVSKLLLHLPLHNRGEAA 65

Query: 76  ITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDM---DNVAVVE 135
           IT+SYEAL RMRDP YGCVAHIF LQQ++ +LQEEI++LG+ +A F  D    ++     
Sbjct: 66  ITISYEALARMRDPVYGCVAHIFALQQQVANLQEEIEILGNHMATFAPDTVTGEHYGATN 125

Query: 136 NPSMELQVSKQLNELVMNTNDYQNE---LLSQLPTFDEVQINDAQMIS---PLFCIGEEE 195
           N +  LQ S Q + L  N  DY N+   LLS        Q  D+ M     PL+  G E 
Sbjct: 126 NLNTGLQFSSQTDTL--NMQDYLNQQALLLSHAGNATANQAFDSLMNEQPPPLY--GWEN 185

Query: 196 GFFGCNPNNAMENSAFDVSVDENFA--YLW 215
             F C+ +       F+  +D+ F+  Y W
Sbjct: 186 QNFFCDSDATPLERLFE-GIDQEFSAYYPW 210

The following BLAST results are available for this feature:

BLAST of CmaCh04G002020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD33_ARATH	3.7e-42	58.90	LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1	[more]
LBD29_ARATH	4.3e-35	59.38	LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1	[more]
LBD18_ARATH	2.6e-32	58.93	LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2	[more]
LBD17_ARATH	7.7e-32	47.47	LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1	[more]
LBD16_ARATH	6.5e-31	52.10	LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1	[more]

BLAST of CmaCh04G002020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNX8_CUCSA	2.1e-73	69.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182740 PE=4 SV=1	[more]
B9HT79_POPTR	8.8e-43	56.52	LOB domain protein 33 OS=Populus trichocarpa GN=POPTR_0010s20800g PE=4 SV=1	[more]
A0A061FTN7_THECC	2.0e-42	59.54	LOB domain-containing protein 29 OS=Theobroma cacao GN=TCM_042730 PE=4 SV=1	[more]
D7TLQ3_VITVI	3.3e-42	50.95	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02060 PE=4 SV=...	[more]
W9R256_9ROSA	9.7e-42	60.12	Uncharacterized protein OS=Morus notabilis GN=L484_025355 PE=4 SV=1	[more]

BLAST of CmaCh04G002020 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06080.1	2.1e-43	58.90	LOB domain-containing protein 33	[more]
AT3G58190.1	2.4e-36	59.38	lateral organ boundaries-domain 29	[more]
AT2G45420.1	1.5e-33	58.93	LOB domain-containing protein 18	[more]
AT2G42440.1	4.3e-33	47.47	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G42430.1	3.7e-32	52.10	lateral organ boundaries-domain 16	[more]

BLAST of CmaCh04G002020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459956\|ref\|XP_004147712.1\|	3.1e-73	69.82	PREDICTED: LOB domain-containing protein 33 [Cucumis sativus]	[more]
gi\|659123494\|ref\|XP_008461694.1\|	1.5e-72	69.96	PREDICTED: LOB domain-containing protein 33-like [Cucumis melo]	[more]
gi\|224112721\|ref\|XP_002316271.1\|	1.3e-42	56.52	LOB domain protein 33 [Populus trichocarpa]	[more]
gi\|590563089\|ref\|XP_007009269.1\|	2.8e-42	59.54	LOB domain-containing protein 29 [Theobroma cacao]	[more]
gi\|225449430\|ref\|XP_002277994.1\|	4.8e-42	50.95	PREDICTED: LOB domain-containing protein 33 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G002020.1	CmaCh04G002020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 17..114 score: 1.1
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 16..118 score: 21
None	No IPR available	unknown	Coil	Coil	coord: 97..117 scor
None	No IPR available	PANTHER	PTHR31529	FAMILY NOT NAMED	coord: 16..157 score: 6.1
None	No IPR available	PANTHER	PTHR31529:SF6	LOB DOMAIN-CONTAINING PROTEIN 33	coord: 16..157 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G002020	Cucsa.165150	Cucumber (Gy14) v1	cgycmaB0471
CmaCh04G002020	Cla003994	Watermelon (97103) v1	cmawmB679
CmaCh04G002020	Csa5G182740	Cucumber (Chinese Long) v2	cmacuB747
CmaCh04G002020	MELO3C023880	Melon (DHL92) v3.5.1	cmameB654
CmaCh04G002020	ClCG07G003530	Watermelon (Charleston Gray)	cmawcgB674
CmaCh04G002020	CSPI05G09830	Wild cucumber (PI 183967)	cmacpiB757
CmaCh04G002020	CmoCh04G012400	Cucurbita moschata (Rifu)	cmacmoB730
CmaCh04G002020	CmoCh04G002030	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G002020	Lsi04G009000	Bottle gourd (USVL1VR-Ls)	cmalsiB677
CmaCh04G002020	Cp4.1LG01g04910	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G002020	Cp4.1LG01g10860	Cucurbita pepo (Zucchini)	cmacpeB722
CmaCh04G002020	MELO3C023880.2	Melon (DHL92) v3.6.1	cmamedB738
CmaCh04G002020	CsaV3_5G008280	Cucumber (Chinese Long) v3	cmacucB0883
CmaCh04G002020	Cla97C07G131820	Watermelon (97103) v2	cmawmbB781
CmaCh04G002020	Bhi06G000865	Wax gourd	cmawgoB0840
CmaCh04G002020	CsGy5G007190	Cucumber (Gy14) v2	cgybcmaB674
CmaCh04G002020	Carg00253	Silver-seed gourd	carcmaB0949
CmaCh04G002020	Carg18333	Silver-seed gourd	carcmaB0115

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G002020	CmaCh04G011700	Cucurbita maxima (Rimu)	cmacmaB531

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G002020	Silver-seed gourd	carcmaB0376
CmaCh04G002020	Silver-seed gourd	carcmaB1385
CmaCh04G002020	Cucumber (Chinese Long) v3	cmacucB0830
CmaCh04G002020	Cucumber (Chinese Long) v3	cmacucB0850
CmaCh04G002020	Cucumber (Chinese Long) v3	cmacucB0913
CmaCh04G002020	Watermelon (97103) v2	cmawmbB720
CmaCh04G002020	Watermelon (97103) v2	cmawmbB729
CmaCh04G002020	Watermelon (97103) v2	cmawmbB751
CmaCh04G002020	Wax gourd	cmawgoB0824
CmaCh04G002020	Wax gourd	cmawgoB0865
CmaCh04G002020	Cucurbita maxima (Rimu)	cmacmaB333
CmaCh04G002020	Cucurbita maxima (Rimu)	cmacmaB514
CmaCh04G002020	Cucurbita maxima (Rimu)	cmacmaB534
CmaCh04G002020	Cucurbita maxima (Rimu)	cmacmaB547
CmaCh04G002020	Cucumber (Gy14) v1	cgycmaB0376
CmaCh04G002020	Cucurbita moschata (Rifu)	cmacmoB725
CmaCh04G002020	Wild cucumber (PI 183967)	cmacpiB696
CmaCh04G002020	Wild cucumber (PI 183967)	cmacpiB784
CmaCh04G002020	Cucumber (Chinese Long) v2	cmacuB774
CmaCh04G002020	Melon (DHL92) v3.5.1	cmameB665
CmaCh04G002020	Melon (DHL92) v3.5.1	cmameB683
CmaCh04G002020	Melon (DHL92) v3.5.1	cmameB712
CmaCh04G002020	Watermelon (Charleston Gray)	cmawcgB625
CmaCh04G002020	Watermelon (Charleston Gray)	cmawcgB651
CmaCh04G002020	Watermelon (97103) v1	cmawmB742
CmaCh04G002020	Bottle gourd (USVL1VR-Ls)	cmalsiB660
CmaCh04G002020	Bottle gourd (USVL1VR-Ls)	cmalsiB661
CmaCh04G002020	Cucumber (Gy14) v2	cgybcmaB411
CmaCh04G002020	Cucumber (Gy14) v2	cgybcmaB548
CmaCh04G002020	Cucumber (Gy14) v2	cgybcmaB842
CmaCh04G002020	Melon (DHL92) v3.6.1	cmamedB767
CmaCh04G002020	Melon (DHL92) v3.6.1	cmamedB770
CmaCh04G002020	Melon (DHL92) v3.6.1	cmamedB800