CmoCh04G002030 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G002030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLOB domain protein 33
LocationCmo_Chr04 : 1007304 .. 1008013 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGGGCTTACCTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGTAGCCACGCTGCCATCACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCGCGTTGCAACAAGAGGTTGTTCTAAAACTTTAAAACTTAAGTAGATGATTAACGCTTTCTTAGCTTGTCAAATCTTTCTCTTGCAGATCATGAGTTTACAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCGCTGATATGGACAACGTTGCAGTCGTCGAGAACCCATGTATAGAGCTTCAAGTCTCGAAACAGTTGAATGATTTGGTGATGAACACAAATGATTATCAAAATGAGTTGCTCTCTCAACTGCCGAATTTTGATCAAGTCGAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGACGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTTGATGTAGCAGTTGATGAAACCTTTGGTTATCTATGGTAG

mRNA sequence

ATGACAGGGCTTACCTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGTAGCCACGCTGCCATCACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCGCGTTGCAACAAGAGATCATGAGTTTACAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCGCTGATATGGACAACGTTGCAGTCGTCGAGAACCCATGTATAGAGCTTCAAGTCTCGAAACAGTTGAATGATTTGGTGATGAACACAAATGATTATCAAAATGAGTTGCTCTCTCAACTGCCGAATTTTGATCAAGTCGAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGACGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTTGATGTAGCAGTTGATGAAACCTTTGGTTATCTATGGTAG

Coding sequence (CDS)

ATGACAGGGCTTACCTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGTAGCCACGCTGCCATCACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCGCGTTGCAACAAGAGATCATGAGTTTACAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCGCTGATATGGACAACGTTGCAGTCGTCGAGAACCCATGTATAGAGCTTCAAGTCTCGAAACAGTTGAATGATTTGGTGATGAACACAAATGATTATCAAAATGAGTTGCTCTCTCAACTGCCGAATTTTGATCAAGTCGAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGACGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTTGATGTAGCAGTTGATGAAACCTTTGGTTATCTATGGTAG
Homology
[Close]
BLAST of CmoCh04G002030 vs. Swiss-Prot
Match: LBD33_ARATH (LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-42
Identity = 90/155 (58.06%), Postives = 117/155 (75.48%), Query Frame = 1 

Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           +S  SSCGACKFLRRKC+  CVF+P+F+Y++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVAVV 129
           + AAIT++YEAL RMRDP YGCVAHIFAL Q++++LQEEI+ LGSQ+ NF+    N + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 130 ENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFD 165
            N      + + +N + M T ++ +E  S L N D
Sbjct: 122 NN------IPEFVNQMTMATTNFVDE--SVLNNAD 148

[Close]
BLAST of CmoCh04G002030 vs. Swiss-Prot
Match: LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-35
Identity = 75/125 (60.00%), Postives = 95/125 (76.00%), Query Frame = 1 

Query: 8   SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMH 67
           SSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP+ 
Sbjct: 4   SSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPIS 63

Query: 68  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVA 127
            R  AAIT++YEA  R++DP YGCV+HIFALQQ++++LQ E+++L  Q A      D+  
Sbjct: 64  DRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS-P 123

Query: 128 VVENP 133
             ENP
Sbjct: 124 TSENP 127

[Close]
BLAST of CmoCh04G002030 vs. Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 5.3e-33
Identity = 66/111 (59.46%), Postives = 86/111 (77.48%), Query Frame = 1 

Query: 8   SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMH 67
           S       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+P+H
Sbjct: 30  SGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVH 89

Query: 68  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIAN 119
            RS A +T+ YEA  R+RDP YGCVAHIFALQQ++++LQ E+  L + +A+
Sbjct: 90  RRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]
BLAST of CmoCh04G002030 vs. Swiss-Prot
Match: LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-32
Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = 1 

Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           + S S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVAVV 129
             AA T+ YEA  R +DP YGCV+HIF+LQQ++++LQ ++++L  Q       +D+ + +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPS-I 121

Query: 130 ENPCI-------ELQVSKQLNDLVMNTNDYQNELLSQLPN-----FDQVEI 169
           ENP          LQ S  L+   + T++ Q E  S L N     + Q+EI
Sbjct: 122 ENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDLKNIMTSCYHQMEI 171

[Close]
BLAST of CmoCh04G002030 vs. Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.6e-32
Identity = 62/110 (56.36%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 8   SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMH 67
           +++ + S CGACKFLRRKC++ C+FAP+F+ ++  + FAA+HKVFGASNVSKLLL++P+H
Sbjct: 8   TTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIH 67

Query: 68  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 118
            R  A +T+AYEA  R+ DP YGCV+HIFALQQ++  LQ ++  + +QIA
Sbjct: 68  DRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]
BLAST of CmoCh04G002030 vs. TrEMBL
Match: A0A0A0KNX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182740 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.1e-75
Identity = 154/217 (70.97%), Postives = 183/217 (84.33%), Query Frame = 1 

Query: 4   LTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLH 63
           +T  +SS+SS+SCGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVSKLLLH
Sbjct: 1   MTGLNSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60

Query: 64  LPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADM 123
           LP HIRSHAAITVAYEALERMRDPTYGCVAHIFALQQE+ SLQEEI++LGSQIANF    
Sbjct: 61  LPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATTG 120

Query: 124 DNVAVVENPCI-ELQVSKQLNDL-VMNTNDYQNELLSQLP--NFDQVEIND--AQMISPL 183
            ++A V+NP I ++QV +Q++   +MNTN YQNEL+S+LP  +FD V+ ++  AQMISPL
Sbjct: 121 GSIAAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQMISPL 180

Query: 184 FCIGEEDGFFG-CNPNNAMENSAFDVAVDET-FGYLW 213
           FC+GEEDG F   N NN +E+SAFDV+V+E   GY W
Sbjct: 181 FCLGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPW 217

[Close]
BLAST of CmoCh04G002030 vs. TrEMBL
Match: B9HT79_POPTR (LOB domain protein 33 OS=Populus trichocarpa GN=POPTR_0010s20800g PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-44
Identity = 113/217 (52.07%), Postives = 137/217 (63.13%), Query Frame = 1 

Query: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGL         SSCGACKFLRRKC++ CVFAP+F YD+A +HFAAVHKVFGASNVSKL
Sbjct: 1   MTGL--------GSSCGACKFLRRKCTSECVFAPYFCYDQAAAHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120
           LLHLP+H R  AAIT++YEAL RMRDP YGCVAHIFALQQ++ SLQEEI++L +Q+A+ T
Sbjct: 61  LLHLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASLQEEIEILENQMASLT 120

Query: 121 ---ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEIN---DAQMI 180
              A   +   + NP  E+  S Q +   MNT  YQN   +QL +      N   D QM 
Sbjct: 121 VGVAGFGSSPTISNPNCEMLFSFQQD--AMNTQYYQNPQSAQLNHSGYTTGNQTFDGQMN 180

Query: 181 SPLFCI-GEEDGFFGCNPNNAMENSAFDVAVDETFGY 211
            PL  + G ED    CN +        +    E F Y
Sbjct: 181 VPLTPLYGWEDQDIFCNSHPRPLERLLEEVDKEIFTY 207

[Close]
BLAST of CmoCh04G002030 vs. TrEMBL
Match: B9SDY8_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1480320 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.3e-43
Identity = 107/188 (56.91%), Postives = 128/188 (68.09%), Query Frame = 1 

Query: 14  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAA 73
           SSCGACKFLRRKC++ CVFAP+F YD+A +HFAAVHKVFGASNVSKLLLHLP+  RS AA
Sbjct: 6   SSCGACKFLRRKCTSECVFAPYFCYDQAATHFAAVHKVFGASNVSKLLLHLPVQNRSDAA 65

Query: 74  ITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT---ADMDNVAVVE 133
           IT++YEAL RMRDP YGCVAHI ALQQ+I SLQEEID+LG Q+ N     A  +N     
Sbjct: 66  ITISYEALARMRDPVYGCVAHILALQQQIASLQEEIDILGHQMTNLAVGIASCENPQATL 125

Query: 134 NPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQV---EINDAQM---ISPLFCIGEED 193
           NP  E+Q S  L D  M    YQN   +Q+ N       E  D+QM   + PL+   ++D
Sbjct: 126 NPRCEMQFS-SLQD-AMIPEYYQNPQDTQVNNSGYTTGNETLDSQMNVELPPLYEWEDQD 185

[Close]
BLAST of CmoCh04G002030 vs. TrEMBL
Match: A0A061FTN7_THECC (LOB domain-containing protein 29 OS=Theobroma cacao GN=TCM_042730 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-42
Identity = 110/199 (55.28%), Postives = 135/199 (67.84%), Query Frame = 1 

Query: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGL         SSCGACKFLRRKC++ CVFAP+F YDEA SHFAAVHKVFGASNVSKL
Sbjct: 1   MTGL--------GSSCGACKFLRRKCTSECVFAPYFCYDEAASHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120
           LLHLPMH RS AA+T++YEAL RMRDP YGCVAHIFALQQ++ +LQEEI++L +Q+AN  
Sbjct: 61  LLHLPMHNRSDAAVTISYEALARMRDPIYGCVAHIFALQQQVANLQEEIEILINQMANHA 120

Query: 121 ADM----DNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQV----EINDAQ 180
           AD      N      P  ++Q +  L++ + +T  YQ+E  +   N   +    +I DAQ
Sbjct: 121 ADQVPSCGNTQAATYPDGKIQFA-SLHETI-STVYYQDEQAALPTNHPGLLTGNQILDAQ 180

Query: 181 MISPLFCIGE-EDGFFGCN 191
           +  PL    E ED  F CN
Sbjct: 181 LCEPLPPSYEWEDQNFLCN 189

[Close]
BLAST of CmoCh04G002030 vs. TrEMBL
Match: D7TLQ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02060 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-42
Identity = 107/210 (50.95%), Postives = 135/210 (64.29%), Query Frame = 1 

Query: 14  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAA 73
           +SCGACKFLRR+C++ CVFAP F YD+A SHFAAVHKVFGASNVSKLLLHLP+H R  AA
Sbjct: 6   ASCGACKFLRRRCTSDCVFAPHFCYDQAASHFAAVHKVFGASNVSKLLLHLPLHNRGEAA 65

Query: 74  ITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADM---DNVAVVE 133
           IT++YEAL RMRDP YGCVAHIFALQQ++ +LQEEI++LG+ +A F  D    ++     
Sbjct: 66  ITISYEALARMRDPVYGCVAHIFALQQQVANLQEEIEILGNHMATFAPDTVTGEHYGATN 125

Query: 134 NPCIELQVSKQLNDLVMNTNDYQNE---LLSQLPNFDQVEINDAQMIS---PLFCIGEED 193
           N    LQ S Q + L  N  DY N+   LLS   N    +  D+ M     PL+  G E+
Sbjct: 126 NLNTGLQFSSQTDTL--NMQDYLNQQALLLSHAGNATANQAFDSLMNEQPPPLY--GWEN 185

Query: 194 GFFGCNPNNAMENSAFDVAVDETFG--YLW 213
             F C+ +       F+  +D+ F   Y W
Sbjct: 186 QNFFCDSDATPLERLFE-GIDQEFSAYYPW 210

[Close]
BLAST of CmoCh04G002030 vs. TAIR10
Match: AT5G06080.1 (AT5G06080.1 LOB domain-containing protein 33)

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-43
Identity = 90/155 (58.06%), Postives = 117/155 (75.48%), Query Frame = 1 

Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           +S  SSCGACKFLRRKC+  CVF+P+F+Y++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVAVV 129
           + AAIT++YEAL RMRDP YGCVAHIFAL Q++++LQEEI+ LGSQ+ NF+    N + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 130 ENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFD 165
            N      + + +N + M T ++ +E  S L N D
Sbjct: 122 NN------IPEFVNQMTMATTNFVDE--SVLNNAD 148

[Close]
BLAST of CmoCh04G002030 vs. TAIR10
Match: AT3G58190.1 (AT3G58190.1 lateral organ boundaries-domain 29)

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-36
Identity = 75/125 (60.00%), Postives = 95/125 (76.00%), Query Frame = 1 

Query: 8   SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMH 67
           SSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP+ 
Sbjct: 4   SSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPIS 63

Query: 68  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVA 127
            R  AAIT++YEA  R++DP YGCV+HIFALQQ++++LQ E+++L  Q A      D+  
Sbjct: 64  DRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS-P 123

Query: 128 VVENP 133
             ENP
Sbjct: 124 TSENP 127

[Close]
BLAST of CmoCh04G002030 vs. TAIR10
Match: AT2G45420.1 (AT2G45420.1 LOB domain-containing protein 18)

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-34
Identity = 66/111 (59.46%), Postives = 86/111 (77.48%), Query Frame = 1 

Query: 8   SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMH 67
           S       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+P+H
Sbjct: 30  SGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVH 89

Query: 68  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIAN 119
            RS A +T+ YEA  R+RDP YGCVAHIFALQQ++++LQ E+  L + +A+
Sbjct: 90  RRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]
BLAST of CmoCh04G002030 vs. TAIR10
Match: AT2G42440.1 (AT2G42440.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-33
Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = 1 

Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           + S S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVAVV 129
             AA T+ YEA  R +DP YGCV+HIF+LQQ++++LQ ++++L  Q       +D+ + +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPS-I 121

Query: 130 ENPCI-------ELQVSKQLNDLVMNTNDYQNELLSQLPN-----FDQVEI 169
           ENP          LQ S  L+   + T++ Q E  S L N     + Q+EI
Sbjct: 122 ENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDLKNIMTSCYHQMEI 171

[Close]
BLAST of CmoCh04G002030 vs. TAIR10
Match: AT2G42430.1 (AT2G42430.1 lateral organ boundaries-domain 16)

HSP 1 Score: 138.7 bits (348), Expect = 4.3e-33
Identity = 62/110 (56.36%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 8   SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMH 67
           +++ + S CGACKFLRRKC++ C+FAP+F+ ++  + FAA+HKVFGASNVSKLLL++P+H
Sbjct: 8   TTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIH 67

Query: 68  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 118
            R  A +T+AYEA  R+ DP YGCV+HIFALQQ++  LQ ++  + +QIA
Sbjct: 68  DRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]
BLAST of CmoCh04G002030 vs. NCBI nr
Match: gi|449459956|ref|XP_004147712.1| (PREDICTED: LOB domain-containing protein 33 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 7.3e-75
Identity = 154/217 (70.97%), Postives = 183/217 (84.33%), Query Frame = 1 

Query: 4   LTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLH 63
           +T  +SS+SS+SCGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVSKLLLH
Sbjct: 1   MTGLNSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60

Query: 64  LPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADM 123
           LP HIRSHAAITVAYEALERMRDPTYGCVAHIFALQQE+ SLQEEI++LGSQIANF    
Sbjct: 61  LPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATTG 120

Query: 124 DNVAVVENPCI-ELQVSKQLNDL-VMNTNDYQNELLSQLP--NFDQVEIND--AQMISPL 183
            ++A V+NP I ++QV +Q++   +MNTN YQNEL+S+LP  +FD V+ ++  AQMISPL
Sbjct: 121 GSIAAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQMISPL 180

Query: 184 FCIGEEDGFFG-CNPNNAMENSAFDVAVDET-FGYLW 213
           FC+GEEDG F   N NN +E+SAFDV+V+E   GY W
Sbjct: 181 FCLGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPW 217

[Close]
BLAST of CmoCh04G002030 vs. NCBI nr
Match: gi|659123494|ref|XP_008461694.1| (PREDICTED: LOB domain-containing protein 33-like [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 6.2e-74
Identity = 154/218 (70.64%), Postives = 181/218 (83.03%), Query Frame = 1 

Query: 4   LTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLH 63
           +T  +SS++SSSCGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVSKLLLH
Sbjct: 1   MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60

Query: 64  LPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADM 123
           LP H RSHAAITVAYEALERMRDPTYGC+AHIFALQQE++SLQEEI++LGSQIAN     
Sbjct: 61  LPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATTG 120

Query: 124 DNVAVVENPCIE--LQVSKQLNDLVM-NTNDYQNELLSQLP--NFDQVE-INDAQMISPL 183
            ++A VENP I+  +QVS+Q++   M NTN YQNEL S+LP  +FD ++  N AQMISPL
Sbjct: 121 GSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMISPL 180

Query: 184 FCIGEEDGFFG-CNPNNAMEN-SAFDVAVDET-FGYLW 213
           FC+GEEDG F  CN NN +E+ SAFDV+V+E   GY W
Sbjct: 181 FCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPW 218

[Close]
BLAST of CmoCh04G002030 vs. NCBI nr
Match: gi|224112721|ref|XP_002316271.1| (LOB domain protein 33 [Populus trichocarpa])

HSP 1 Score: 188.0 bits (476), Expect = 1.7e-44
Identity = 113/217 (52.07%), Postives = 137/217 (63.13%), Query Frame = 1 

Query: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGL         SSCGACKFLRRKC++ CVFAP+F YD+A +HFAAVHKVFGASNVSKL
Sbjct: 1   MTGL--------GSSCGACKFLRRKCTSECVFAPYFCYDQAAAHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120
           LLHLP+H R  AAIT++YEAL RMRDP YGCVAHIFALQQ++ SLQEEI++L +Q+A+ T
Sbjct: 61  LLHLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASLQEEIEILENQMASLT 120

Query: 121 ---ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEIN---DAQMI 180
              A   +   + NP  E+  S Q +   MNT  YQN   +QL +      N   D QM 
Sbjct: 121 VGVAGFGSSPTISNPNCEMLFSFQQD--AMNTQYYQNPQSAQLNHSGYTTGNQTFDGQMN 180

Query: 181 SPLFCI-GEEDGFFGCNPNNAMENSAFDVAVDETFGY 211
            PL  + G ED    CN +        +    E F Y
Sbjct: 181 VPLTPLYGWEDQDIFCNSHPRPLERLLEEVDKEIFTY 207

[Close]
BLAST of CmoCh04G002030 vs. NCBI nr
Match: gi|743917293|ref|XP_011002633.1| (PREDICTED: LOB domain-containing protein 29-like [Populus euphratica])

HSP 1 Score: 183.7 bits (465), Expect = 3.3e-43
Identity = 111/217 (51.15%), Postives = 135/217 (62.21%), Query Frame = 1 

Query: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGL         SSCGACKFLRRKC++ CVFAP+F YD+A +HFAAVHKVFGASNVSKL
Sbjct: 1   MTGL--------GSSCGACKFLRRKCTSECVFAPYFCYDQAAAHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANF- 120
           LLHLP+H R  AAIT++YEAL RMRDP YGCVAHIFALQQ++ SLQEEI++L +Q+A+  
Sbjct: 61  LLHLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASLQEEIEILENQMASLP 120

Query: 121 --TADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEIN---DAQMI 180
              A   +   + N   E+  S Q +   MNT  YQN   +QL +      N   D QM 
Sbjct: 121 VGVAGFGSSPTISNTNCEMLFSFQQD--AMNTQYYQNPQSAQLNHSGYTTGNQTFDGQMS 180

Query: 181 SPLFCI-GEEDGFFGCNPNNAMENSAFDVAVDETFGY 211
            PL  + G ED    CN +        +    E F Y
Sbjct: 181 MPLPPLYGWEDHDIFCNSHPRPLERLLEEVDKEIFAY 207

[Close]
BLAST of CmoCh04G002030 vs. NCBI nr
Match: gi|255566444|ref|XP_002524207.1| (PREDICTED: LOB domain-containing protein 33 [Ricinus communis])

HSP 1 Score: 183.7 bits (465), Expect = 3.3e-43
Identity = 107/188 (56.91%), Postives = 128/188 (68.09%), Query Frame = 1 

Query: 14  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAA 73
           SSCGACKFLRRKC++ CVFAP+F YD+A +HFAAVHKVFGASNVSKLLLHLP+  RS AA
Sbjct: 6   SSCGACKFLRRKCTSECVFAPYFCYDQAATHFAAVHKVFGASNVSKLLLHLPVQNRSDAA 65

Query: 74  ITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT---ADMDNVAVVE 133
           IT++YEAL RMRDP YGCVAHI ALQQ+I SLQEEID+LG Q+ N     A  +N     
Sbjct: 66  ITISYEALARMRDPVYGCVAHILALQQQIASLQEEIDILGHQMTNLAVGIASCENPQATL 125

Query: 134 NPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQV---EINDAQM---ISPLFCIGEED 193
           NP  E+Q S  L D  M    YQN   +Q+ N       E  D+QM   + PL+   ++D
Sbjct: 126 NPRCEMQFS-SLQD-AMIPEYYQNPQDTQVNNSGYTTGNETLDSQMNVELPPLYEWEDQD 185

The following BLAST results are available for this feature:
BLAST of CmoCh04G002030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD33_ARATH2.1e-4258.06LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1[more]
LBD29_ARATH2.5e-3560.00LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1[more]
LBD18_ARATH5.3e-3359.46LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2[more]
LBD17_ARATH2.6e-3246.20LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1[more]
LBD16_ARATH7.6e-3256.36LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1[more]
BLAST of CmoCh04G002030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNX8_CUCSA5.1e-7570.97Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182740 PE=4 SV=1[more]
B9HT79_POPTR1.2e-4452.07LOB domain protein 33 OS=Populus trichocarpa GN=POPTR_0010s20800g PE=4 SV=1[more]
B9SDY8_RICCO2.3e-4356.91LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1480320 PE=4... [more]
A0A061FTN7_THECC1.5e-4255.28LOB domain-containing protein 29 OS=Theobroma cacao GN=TCM_042730 PE=4 SV=1[more]
D7TLQ3_VITVI1.5e-4250.95Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02060 PE=4 SV=... [more]
BLAST of CmoCh04G002030 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G06080.11.2e-4358.06 LOB domain-containing protein 33[more]
AT3G58190.11.4e-3660.00 lateral organ boundaries-domain 29[more]
AT2G45420.13.0e-3459.46 LOB domain-containing protein 18[more]
AT2G42440.11.5e-3346.20 Lateral organ boundaries (LOB) domain family protein[more]
AT2G42430.14.3e-3356.36 lateral organ boundaries-domain 16[more]
BLAST of CmoCh04G002030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459956|ref|XP_004147712.1|7.3e-7570.97PREDICTED: LOB domain-containing protein 33 [Cucumis sativus][more]
gi|659123494|ref|XP_008461694.1|6.2e-7470.64PREDICTED: LOB domain-containing protein 33-like [Cucumis melo][more]
gi|224112721|ref|XP_002316271.1|1.7e-4452.07LOB domain protein 33 [Populus trichocarpa][more]
gi|743917293|ref|XP_011002633.1|3.3e-4351.15PREDICTED: LOB domain-containing protein 29-like [Populus euphratica][more]
gi|255566444|ref|XP_002524207.1|3.3e-4356.91PREDICTED: LOB domain-containing protein 33 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G002030.1CmoCh04G002030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 15..112
score: 7.4
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 14..116
score: 21
NoneNo IPR availableunknownCoilCoilcoord: 95..122
scor
NoneNo IPR availablePANTHERPTHR31529FAMILY NOT NAMEDcoord: 14..174
score: 2.4
NoneNo IPR availablePANTHERPTHR31529:SF6LOB DOMAIN-CONTAINING PROTEIN 33coord: 14..174
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G002030Cucsa.165150Cucumber (Gy14) v1cgycmoB0474
CmoCh04G002030CmaCh04G002020Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G002030CmaCh04G011700Cucurbita maxima (Rimu)cmacmoB731
CmoCh04G002030Cla003994Watermelon (97103) v1cmowmB673
CmoCh04G002030Csa5G182740Cucumber (Chinese Long) v2cmocuB737
CmoCh04G002030MELO3C023880Melon (DHL92) v3.5.1cmomeB646
CmoCh04G002030ClCG07G003530Watermelon (Charleston Gray)cmowcgB676
CmoCh04G002030CSPI05G09830Wild cucumber (PI 183967)cmocpiB747
CmoCh04G002030Lsi04G009000Bottle gourd (USVL1VR-Ls)cmolsiB670
CmoCh04G002030Cp4.1LG01g04910Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G002030Cp4.1LG01g10860Cucurbita pepo (Zucchini)cmocpeB674
CmoCh04G002030MELO3C023880.2Melon (DHL92) v3.6.1cmomedB733
CmoCh04G002030CsaV3_5G008280Cucumber (Chinese Long) v3cmocucB0873
CmoCh04G002030Cla97C07G131820Watermelon (97103) v2cmowmbB755
CmoCh04G002030Bhi06G000865Wax gourdcmowgoB0837
CmoCh04G002030CsGy5G007190Cucumber (Gy14) v2cgybcmoB652
CmoCh04G002030Carg00253Silver-seed gourdcarcmoB0924
CmoCh04G002030Carg18333Silver-seed gourdcarcmoB0123
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G002030CmoCh04G012400Cucurbita moschata (Rifu)cmocmoB464
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G002030Watermelon (97103) v2cmowmbB722
CmoCh04G002030Wax gourdcmowgoB0864
CmoCh04G002030Cucurbita moschata (Rifu)cmocmoB267
CmoCh04G002030Cucurbita moschata (Rifu)cmocmoB448
CmoCh04G002030Cucurbita moschata (Rifu)cmocmoB478
CmoCh04G002030Cucumber (Gy14) v1cgycmoB0373
CmoCh04G002030Wild cucumber (PI 183967)cmocpiB776
CmoCh04G002030Cucumber (Chinese Long) v2cmocuB767
CmoCh04G002030Melon (DHL92) v3.5.1cmomeB676
CmoCh04G002030Watermelon (Charleston Gray)cmowcgB630
CmoCh04G002030Watermelon (97103) v1cmowmB737
CmoCh04G002030Cucurbita pepo (Zucchini)cmocpeB653
CmoCh04G002030Bottle gourd (USVL1VR-Ls)cmolsiB630
CmoCh04G002030Bottle gourd (USVL1VR-Ls)cmolsiB649
CmoCh04G002030Cucumber (Gy14) v2cgybcmoB522
CmoCh04G002030Cucumber (Gy14) v2cgybcmoB823
CmoCh04G002030Melon (DHL92) v3.6.1cmomedB798
CmoCh04G002030Silver-seed gourdcarcmoB0372
CmoCh04G002030Silver-seed gourdcarcmoB1247
CmoCh04G002030Cucumber (Chinese Long) v3cmocucB0837
CmoCh04G002030Cucumber (Chinese Long) v3cmocucB0906