Cla003994 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003994
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	LOB domain protein 20 (AHRD V1 -- D7L194_ARALL); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB
Location	Chr7 : 3434816 .. 3435754 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGCCTTAACTCTTCTAATTTCTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTACGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTACATCTCCCCATTCATATCCGAAGCCACGCTGCCCTTACGGTCGCTTATGAAGCGCTCGAGCGCATGCGAGATCCTACCTATGGTTGCGTTGCGCATATTTTCGCATTGCAGCAAGAGGTTGTTTTGAAACCCTAAAAACTTAAGCAGATGGATTACAGTAAATTTACGTGTGACCTTACCTTTTTATTCCTATGAGAGTATGACAAAACTCTAAAAATTTAAGCAGATGATTACATTTTATTCATATTTTTAACCCTTCAATAATTCACTTGAGAAATACTCAACAATAATAGAGATTTGAATAACCACGATACTTTATATTTCAATCTTATTGCAAACGGACACTATTAAATTCAAAAGCTTAAGTTAAGTTATTAAATCTTCCTCGTGTAGGTTGCGAGCTTGCAAGAGGAGATAGAAATTCTGGGGAGCCAAATAGCAAACTTCACTGCTACCGGTGGGAGCGTTGCGGGGGTTGAGAATCCATTTATAGATCAGCTTCAAGTTTCACAACAGCTGAAAGATTTTGGGATGATGAACAGAGATGATTATCAAAATGAGCTGCTTTCTGAGTTGCCCTACCAAAGTTTTGATAACATCCAAAATGATAATAATGGTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGGGTTTTGCAGCTCAAATGATGTTGTTGAGAGATCAGCCTGTGATGTTTCATTTGAGGAGAGTTTTGTTGGTTATCCATGGGTAGTTGGATGA

mRNA sequence

ATGACAGGCCTTAACTCTTCTAATTTCTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTACGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTACATCTCCCCATTCATATCCGAAGCCACGCTGCCCTTACGGTCGCTTATGAAGCGCTCGAGCGCATGCGAGATCCTACCTATGGTTGCGTTGCGCATATTTTCGCATTGCAGCAAGAGGTTGCGAGCTTGCAAGAGGAGATAGAAATTCTGGGGAGCCAAATAGCAAACTTCACTGCTACCGGTGGGAGCGTTGCGGGGGTTGAGAATCCATTTATAGATCAGCTTCAAGTTTCACAACAGCTGAAAGATTTTGGGATGATGAACAGAGATGATTATCAAAATGAGCTGCTTTCTGAGTTGCCCTACCAAAGTTTTGATAACATCCAAAATGATAATAATGGTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGGGTTTTGCAGCTCAAATGATGTTGTTGAGAGATCAGCCTGTGATGTTTCATTTGAGGAGAGTTTTGTTGGTTATCCATGGGTAGTTGGATGA

Coding sequence (CDS)

ATGACAGGCCTTAACTCTTCTAATTTCTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTACGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTACATCTCCCCATTCATATCCGAAGCCACGCTGCCCTTACGGTCGCTTATGAAGCGCTCGAGCGCATGCGAGATCCTACCTATGGTTGCGTTGCGCATATTTTCGCATTGCAGCAAGAGGTTGCGAGCTTGCAAGAGGAGATAGAAATTCTGGGGAGCCAAATAGCAAACTTCACTGCTACCGGTGGGAGCGTTGCGGGGGTTGAGAATCCATTTATAGATCAGCTTCAAGTTTCACAACAGCTGAAAGATTTTGGGATGATGAACAGAGATGATTATCAAAATGAGCTGCTTTCTGAGTTGCCCTACCAAAGTTTTGATAACATCCAAAATGATAATAATGGTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGGGTTTTGCAGCTCAAATGATGTTGTTGAGAGATCAGCCTGTGATGTTTCATTTGAGGAGAGTTTTGTTGGTTATCCATGGGTAGTTGGATGA

Protein sequence

MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTATGGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQNELLSELPYQSFDNIQNDNNGQMISPLFCLGEEDGVFGFCSSNDVVERSACDVSFEESFVGYPWVVG

Homology

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BLAST of Cla003994 vs. Swiss-Prot
Match: LBD33_ARATH (LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 88/146 (60.27%), Postives = 111/146 (76.03%), Query Frame = 1


Query: 12  SSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPIHIRSHAA 71
           SSCGACKFLRRKC+  CVF+P+FSY++A+SHFAAVHKVFGASNVSK LLHLP H R+ AA
Sbjct: 6   SSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQRNIAA 65

Query: 72  LTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTATGGSVAGVEN-- 131
           +T++YEAL RMRDP YGCVAHIFAL Q+V +LQEEIE LGSQ+ NF+ +  + + + N  
Sbjct: 66  ITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQLNNIP 125

Query: 132 PFIDQL-QVSQQLKDFGMMNRDDYQN 155
            F++Q+   +    D  ++N  D +N
Sbjct: 126 EFVNQMTMATTNFVDESVLNNADGRN 151

[Close]

BLAST of Cla003994 vs. Swiss-Prot
Match: LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.1e-37
Identity = 76/126 (60.32%), Postives = 91/126 (72.22%), Query Frame = 1


Query: 5   NSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPI 64
           +SS+ S S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLPI
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 65  HIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTATGGSV 124
             R  AA+T++YEA  R++DP YGCV+HIFALQQ+V +LQ E+EIL  Q A       S 
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP 122

Query: 125 AGVENP 131
              ENP
Sbjct: 123 TS-ENP 127

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BLAST of Cla003994 vs. Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 5.8e-35
Identity = 68/114 (59.65%), Postives = 85/114 (74.56%), Query Frame = 1


Query: 3   GLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHL 62
           G +S       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+
Sbjct: 27  GGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHI 86

Query: 63  PIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIAN 117
           P+H RS A +T+ YEA  R+RDP YGCVAHIFALQQ+V +LQ E+  L + +A+
Sbjct: 87  PVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of Cla003994 vs. Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.9e-34
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 2   TGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 61
           +G  ++  + S CGACKFLRRKC+  C+FAP+FS ++  + FAA+HKVFGASNVSKLLL+
Sbjct: 4   SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLN 63

Query: 62  LPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIA 116
           +PIH R  A +T+AYEA  R+ DP YGCV+HIFALQQ+VA LQ ++  + +QIA
Sbjct: 64  VPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]

BLAST of Cla003994 vs. Swiss-Prot
Match: LBD20_ARATH (LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 73/154 (47.40%), Postives = 95/154 (61.69%), Query Frame = 1


Query: 1   MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           M    +   ++S CGACKFLRRKC   C+FAP F  D+  + FAAVHKVFGASNVSKLL 
Sbjct: 39  MAAATTGTGTASPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLH 98

Query: 61  HLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTAT 120
           H+P++ R  A +T++YEA  R+ DP YGCV+ I ALQQ+VASLQ E+ ++ SQ+ N    
Sbjct: 99  HIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQLIN---- 158

Query: 121 GGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQN 155
             S   + N    Q    QQ +   +M + +Y N
Sbjct: 159 --SRVAMANVMQQQTHHQQQQQQLVVMQQPEYSN 186

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BLAST of Cla003994 vs. TrEMBL
Match: A0A0A0KNX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182740 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 3.9e-102
Identity = 188/221 (85.07%), Postives = 202/221 (91.40%), Query Frame = 1


Query: 1   MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           MTGLNSSN SS+SCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL
Sbjct: 1   MTGLNSSN-SSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60

Query: 61  HLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTAT 120
           HLP HIRSHAA+TVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANF  T
Sbjct: 61  HLPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATT 120

Query: 121 GGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQNELLSELPYQSFDNIQNDN-NGQMISP 180
           GGS+A V+NPFIDQ+QV QQ+  FGMMN + YQNEL+SELPYQSFDN+QNDN   QMISP
Sbjct: 121 GGSIAAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQMISP 180

Query: 181 LFCLGEEDGVFGFCSSNDVVERSACDVSFEESFVGYPWVVG 221
           LFCLGEEDGVF F +SN+VVE SA DVS EE+ +GYPW+VG
Sbjct: 181 LFCLGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPWIVG 220

[Close]

BLAST of Cla003994 vs. TrEMBL
Match: B9HT79_POPTR (LOB domain protein 33 OS=Populus trichocarpa GN=POPTR_0010s20800g PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.3e-48
Identity = 114/200 (57.00%), Postives = 136/200 (68.00%), Query Frame = 1


Query: 1   MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           MTGL S      SCGACKFLRRKC+ +CVFAP+F YD+A +HFAAVHKVFGASNVSKLLL
Sbjct: 1   MTGLGS------SCGACKFLRRKCTSECVFAPYFCYDQAAAHFAAVHKVFGASNVSKLLL 60

Query: 61  HLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFT-- 120
           HLP+H R  AA+T++YEAL RMRDP YGCVAHIFALQQ+VASLQEEIEIL +Q+A+ T  
Sbjct: 61  HLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASLQEEIEILENQMASLTVG 120

Query: 121 -ATGGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQNELLSELPYQSFDNIQNDNNGQMI 180
            A  GS   + NP  + L   QQ      MN   YQN   ++L +  +       +GQM 
Sbjct: 121 VAGFGSSPTISNPNCEMLFSFQQ----DAMNTQYYQNPQSAQLNHSGYTTGNQTFDGQMN 180

Query: 181 SPLFCL-GEEDGVFGFCSSN 197
            PL  L G ED    FC+S+
Sbjct: 181 VPLTPLYGWEDQDI-FCNSH 189

[Close]

BLAST of Cla003994 vs. TrEMBL
Match: W9R256_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025355 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-47
Identity = 112/219 (51.14%), Postives = 135/219 (61.64%), Query Frame = 1


Query: 12  SSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPIHIRSHAA 71
           SSCGACKFLRRKCS +C+FAP+F YDEA SHFAAVHKVFGASNVSKLLLHLP+H RS AA
Sbjct: 6   SSCGACKFLRRKCSSECIFAPYFCYDEAPSHFAAVHKVFGASNVSKLLLHLPVHNRSDAA 65

Query: 72  LTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTATG----GSVAGV 131
            T++YEAL RMRDP YGCVAHIF LQQ++A LQEEIEILG+QIAN    G    GS    
Sbjct: 66  TTISYEALARMRDPIYGCVAHIFTLQQQIACLQEEIEILGNQIANNLTAGIASCGSSEAT 125

Query: 132 ENPFIDQLQVSQQLKDFGMMNRDDYQNE---LLSELPYQSFDN-----IQNDNNGQMISP 191
            N     +  +Q       MN   YQN+   LLS++   + +N         N G    P
Sbjct: 126 NNNNSSNVNETQIFPQNDAMNSQYYQNQQEILLSQIGNSTENNNNQSGFDGHNMGVHFPP 185

Query: 192 LFCLGEEDGVFGFCSSNDVVERSACDVSFEESFVGYPWV 219
            +  GEE+     C +     R   + + +E F   PW+
Sbjct: 186 FYGWGEENVP---CHTFSDPLRKLFEGTEQEKFGNSPWL 221

[Close]

BLAST of Cla003994 vs. TrEMBL
Match: D7TLQ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02060 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.5e-45
Identity = 113/223 (50.67%), Postives = 137/223 (61.43%), Query Frame = 1


Query: 1   MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           MTG+ +      SCGACKFLRR+C+  CVFAP F YD+A SHFAAVHKVFGASNVSKLLL
Sbjct: 1   MTGIGA------SCGACKFLRRRCTSDCVFAPHFCYDQAASHFAAVHKVFGASNVSKLLL 60

Query: 61  HLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFT-- 120
           HLP+H R  AA+T++YEAL RMRDP YGCVAHIFALQQ+VA+LQEEIEILG+ +A F   
Sbjct: 61  HLPLHNRGEAAITISYEALARMRDPVYGCVAHIFALQQQVANLQEEIEILGNHMATFAPD 120

Query: 121 ATGGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQNELLSE----LPYQSFDNIQNDNNG 180
              G   G  N     LQ S Q     M +  + Q  LLS        Q+FD++ N+   
Sbjct: 121 TVTGEHYGATNNLNTGLQFSSQTDTLNMQDYLNQQALLLSHAGNATANQAFDSLMNEQP- 180

Query: 181 QMISPLFCLGEEDGVFGFCSSNDVVERSACDVSFEESFVGYPW 218
               PL+  G E+  F FC S+        +   +E    YPW
Sbjct: 181 ---PPLY--GWENQNF-FCDSDATPLERLFEGIDQEFSAYYPW 210

[Close]

BLAST of Cla003994 vs. TrEMBL
Match: A0A067LJS2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01420 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 9.7e-45
Identity = 96/147 (65.31%), Postives = 114/147 (77.55%), Query Frame = 1


Query: 1   MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           MTGL S      SCGACKFLRRKC+ +CVFAP+F Y++A +HFAAVHKVFGASNVSKLLL
Sbjct: 1   MTGLGS------SCGACKFLRRKCTSECVFAPYFCYEQAATHFAAVHKVFGASNVSKLLL 60

Query: 61  HLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFT-- 120
           HLP+  RS AA+T++YEAL RMRDP YGCVAHIFALQQ++ASLQEEIEILG Q+AN T  
Sbjct: 61  HLPLQNRSDAAITISYEALARMRDPIYGCVAHIFALQQQIASLQEEIEILGHQMANLTVG 120

Query: 121 -ATGGSVAGVENPFIDQLQVSQQLKDF 145
            A+ GS   + NP    LQ +  ++ F
Sbjct: 121 IASRGSSQTISNPNCSSLQDAINMQYF 141

[Close]

BLAST of Cla003994 vs. NCBI nr
Match: gi|449459956|ref|XP_004147712.1| (PREDICTED: LOB domain-containing protein 33 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 5.5e-102
Identity = 188/221 (85.07%), Postives = 202/221 (91.40%), Query Frame = 1


Query: 1   MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           MTGLNSSN SS+SCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL
Sbjct: 1   MTGLNSSN-SSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60

Query: 61  HLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTAT 120
           HLP HIRSHAA+TVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANF  T
Sbjct: 61  HLPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATT 120

Query: 121 GGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQNELLSELPYQSFDNIQNDN-NGQMISP 180
           GGS+A V+NPFIDQ+QV QQ+  FGMMN + YQNEL+SELPYQSFDN+QNDN   QMISP
Sbjct: 121 GGSIAAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQMISP 180

Query: 181 LFCLGEEDGVFGFCSSNDVVERSACDVSFEESFVGYPWVVG 221
           LFCLGEEDGVF F +SN+VVE SA DVS EE+ +GYPW+VG
Sbjct: 181 LFCLGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPWIVG 220

[Close]

BLAST of Cla003994 vs. NCBI nr
Match: gi|659123494|ref|XP_008461694.1| (PREDICTED: LOB domain-containing protein 33-like [Cucumis melo])

HSP 1 Score: 367.5 bits (942), Expect = 1.7e-98
Identity = 186/222 (83.78%), Postives = 197/222 (88.74%), Query Frame = 1


Query: 1   MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           MTGLNSS  +SSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL
Sbjct: 1   MTGLNSST-TSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60

Query: 61  HLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTAT 120
           HLP H RSHAA+TVAYEALERMRDPTYGC+AHIFALQQEV SLQEEIEILGSQIAN   T
Sbjct: 61  HLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATT 120

Query: 121 GGSVAGVENPFIDQ-LQVSQQLKDFGMMNRDDYQNELLSELPYQSFDNIQNDNNGQMISP 180
           GGS+A VENPFIDQ +QVSQQ+  F M N + YQNEL SELPYQSFDNIQNDN  QMISP
Sbjct: 121 GGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMISP 180

Query: 181 LFCLGEEDGVFGFCSSNDVVE-RSACDVSFEESFVGYPWVVG 221
           LFCLGEEDGVF FC+SN+VVE  SA DVS EE+ VGYPW+VG
Sbjct: 181 LFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 221

[Close]

BLAST of Cla003994 vs. NCBI nr
Match: gi|224112721|ref|XP_002316271.1| (LOB domain protein 33 [Populus trichocarpa])

HSP 1 Score: 198.4 bits (503), Expect = 1.3e-47
Identity = 114/200 (57.00%), Postives = 136/200 (68.00%), Query Frame = 1


Query: 1   MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           MTGL S      SCGACKFLRRKC+ +CVFAP+F YD+A +HFAAVHKVFGASNVSKLLL
Sbjct: 1   MTGLGS------SCGACKFLRRKCTSECVFAPYFCYDQAAAHFAAVHKVFGASNVSKLLL 60

Query: 61  HLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFT-- 120
           HLP+H R  AA+T++YEAL RMRDP YGCVAHIFALQQ+VASLQEEIEIL +Q+A+ T  
Sbjct: 61  HLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASLQEEIEILENQMASLTVG 120

Query: 121 -ATGGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQNELLSELPYQSFDNIQNDNNGQMI 180
            A  GS   + NP  + L   QQ      MN   YQN   ++L +  +       +GQM 
Sbjct: 121 VAGFGSSPTISNPNCEMLFSFQQ----DAMNTQYYQNPQSAQLNHSGYTTGNQTFDGQMN 180

Query: 181 SPLFCL-GEEDGVFGFCSSN 197
            PL  L G ED    FC+S+
Sbjct: 181 VPLTPLYGWEDQDI-FCNSH 189

[Close]

BLAST of Cla003994 vs. NCBI nr
Match: gi|703099279|ref|XP_010096608.1| (hypothetical protein L484_025355 [Morus notabilis])

HSP 1 Score: 197.2 bits (500), Expect = 3.0e-47
Identity = 112/219 (51.14%), Postives = 135/219 (61.64%), Query Frame = 1


Query: 12  SSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPIHIRSHAA 71
           SSCGACKFLRRKCS +C+FAP+F YDEA SHFAAVHKVFGASNVSKLLLHLP+H RS AA
Sbjct: 6   SSCGACKFLRRKCSSECIFAPYFCYDEAPSHFAAVHKVFGASNVSKLLLHLPVHNRSDAA 65

Query: 72  LTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTATG----GSVAGV 131
            T++YEAL RMRDP YGCVAHIF LQQ++A LQEEIEILG+QIAN    G    GS    
Sbjct: 66  TTISYEALARMRDPIYGCVAHIFTLQQQIACLQEEIEILGNQIANNLTAGIASCGSSEAT 125

Query: 132 ENPFIDQLQVSQQLKDFGMMNRDDYQNE---LLSELPYQSFDN-----IQNDNNGQMISP 191
            N     +  +Q       MN   YQN+   LLS++   + +N         N G    P
Sbjct: 126 NNNNSSNVNETQIFPQNDAMNSQYYQNQQEILLSQIGNSTENNNNQSGFDGHNMGVHFPP 185

Query: 192 LFCLGEEDGVFGFCSSNDVVERSACDVSFEESFVGYPWV 219
            +  GEE+     C +     R   + + +E F   PW+
Sbjct: 186 FYGWGEENVP---CHTFSDPLRKLFEGTEQEKFGNSPWL 221

[Close]

BLAST of Cla003994 vs. NCBI nr
Match: gi|743917293|ref|XP_011002633.1| (PREDICTED: LOB domain-containing protein 29-like [Populus euphratica])

HSP 1 Score: 193.4 bits (490), Expect = 4.3e-46
Identity = 112/200 (56.00%), Postives = 134/200 (67.00%), Query Frame = 1


Query: 1   MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           MTGL S      SCGACKFLRRKC+ +CVFAP+F YD+A +HFAAVHKVFGASNVSKLLL
Sbjct: 1   MTGLGS------SCGACKFLRRKCTSECVFAPYFCYDQAAAHFAAVHKVFGASNVSKLLL 60

Query: 61  HLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANF--- 120
           HLP+H R  AA+T++YEAL RMRDP YGCVAHIFALQQ+VASLQEEIEIL +Q+A+    
Sbjct: 61  HLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASLQEEIEILENQMASLPVG 120

Query: 121 TATGGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQNELLSELPYQSFDNIQNDNNGQMI 180
            A  GS   + N   + L   QQ      MN   YQN   ++L +  +       +GQM 
Sbjct: 121 VAGFGSSPTISNTNCEMLFSFQQ----DAMNTQYYQNPQSAQLNHSGYTTGNQTFDGQMS 180

Query: 181 SPLFCL-GEEDGVFGFCSSN 197
            PL  L G ED    FC+S+
Sbjct: 181 MPLPPLYGWEDHDI-FCNSH 189

The following BLAST results are available for this feature:

BLAST of Cla003994 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD33_ARATH	1.2e-43	60.27	LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1	[more]
LBD29_ARATH	8.1e-37	60.32	LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1	[more]
LBD18_ARATH	5.8e-35	59.65	LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2	[more]
LBD16_ARATH	2.9e-34	58.77	LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1	[more]
LBD20_ARATH	1.1e-33	47.40	LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1	[more]

BLAST of Cla003994 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNX8_CUCSA	3.9e-102	85.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182740 PE=4 SV=1	[more]
B9HT79_POPTR	9.3e-48	57.00	LOB domain protein 33 OS=Populus trichocarpa GN=POPTR_0010s20800g PE=4 SV=1	[more]
W9R256_9ROSA	2.1e-47	51.14	Uncharacterized protein OS=Morus notabilis GN=L484_025355 PE=4 SV=1	[more]
D7TLQ3_VITVI	1.5e-45	50.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02060 PE=4 SV=...	[more]
A0A067LJS2_JATCU	9.7e-45	65.31	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01420 PE=4 SV=1	[more]

BLAST of Cla003994 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459956\|ref\|XP_004147712.1\|	5.5e-102	85.07	PREDICTED: LOB domain-containing protein 33 [Cucumis sativus]	[more]
gi\|659123494\|ref\|XP_008461694.1\|	1.7e-98	83.78	PREDICTED: LOB domain-containing protein 33-like [Cucumis melo]	[more]
gi\|224112721\|ref\|XP_002316271.1\|	1.3e-47	57.00	LOB domain protein 33 [Populus trichocarpa]	[more]
gi\|703099279\|ref\|XP_010096608.1\|	3.0e-47	51.14	hypothetical protein L484_025355 [Morus notabilis]	[more]
gi\|743917293\|ref\|XP_011002633.1\|	4.3e-46	56.00	PREDICTED: LOB domain-containing protein 29-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU10823	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003994	Cla003994.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU10823	WMU10823	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 13..110 score: 1.1
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 12..114 score: 21
None	No IPR available	unknown	Coil	Coil	coord: 93..120 scor
None	No IPR available	PANTHER	PTHR31529	FAMILY NOT NAMED	coord: 12..160 score: 2.3
None	No IPR available	PANTHER	PTHR31529:SF6	LOB DOMAIN-CONTAINING PROTEIN 33	coord: 12..160 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003994	Cla97C07G131820	Watermelon (97103) v2	wmwmbB177
Cla003994	Csa5G182740	Cucumber (Chinese Long) v2	cuwmB391
Cla003994	MELO3C023880	Melon (DHL92) v3.5.1	mewmB055
Cla003994	ClCG07G003530	Watermelon (Charleston Gray)	wcgwmB375
Cla003994	CSPI05G09830	Wild cucumber (PI 183967)	cpiwmB399
Cla003994	Cucsa.165150	Cucumber (Gy14) v1	cgywmB306
Cla003994	CmaCh04G011700	Cucurbita maxima (Rimu)	cmawmB678
Cla003994	CmaCh04G002020	Cucurbita maxima (Rimu)	cmawmB679
Cla003994	CmoCh04G012400	Cucurbita moschata (Rifu)	cmowmB672
Cla003994	CmoCh04G002030	Cucurbita moschata (Rifu)	cmowmB673
Cla003994	Lsi04G009000	Bottle gourd (USVL1VR-Ls)	lsiwmB307
Cla003994	Cp4.1LG01g04910	Cucurbita pepo (Zucchini)	cpewmB403
Cla003994	Cp4.1LG01g10860	Cucurbita pepo (Zucchini)	cpewmB404
Cla003994	CsGy5G007190	Cucumber (Gy14) v2	cgybwmB365
Cla003994	MELO3C023880.2	Melon (DHL92) v3.6.1	medwmB057
Cla003994	Carg18333	Silver-seed gourd	carwmB0087
Cla003994	Carg00253	Silver-seed gourd	carwmB0663
Cla003994	CsaV3_5G008280	Cucumber (Chinese Long) v3	cucwmB416
Cla003994	Bhi06G000865	Wax gourd	wgowmB129

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003994	Melon (DHL92) v3.6.1	medwmB555
Cla003994	Cucumber (Gy14) v2	cgybwmB210
Cla003994	Silver-seed gourd	carwmB0441
Cla003994	Cucumber (Chinese Long) v3	cucwmB040
Cla003994	Cucumber (Chinese Long) v3	cucwmB419
Cla003994	Cucumber (Chinese Long) v3	cucwmB230
Cla003994	Watermelon (97103) v2	wmwmbB160
Cla003994	Watermelon (97103) v2	wmwmbB149
Cla003994	Wax gourd	wgowmB043
Cla003994	Wax gourd	wgowmB492
Cla003994	Watermelon (97103) v1	wmwmB015
Cla003994	Watermelon (97103) v1	wmwmB044
Cla003994	Watermelon (97103) v1	wmwmB080
Cla003994	Watermelon (97103) v1	wmwmB106
Cla003994	Watermelon (97103) v1	wmwmB113
Cla003994	Cucumber (Gy14) v1	cgywmB063
Cla003994	Cucumber (Gy14) v1	cgywmB337
Cla003994	Cucurbita maxima (Rimu)	cmawmB624
Cla003994	Cucurbita moschata (Rifu)	cmowmB615
Cla003994	Melon (DHL92) v3.5.1	mewmB316
Cla003994	Melon (DHL92) v3.5.1	mewmB366
Cla003994	Melon (DHL92) v3.5.1	mewmB566
Cla003994	Watermelon (Charleston Gray)	wcgwmB067
Cla003994	Watermelon (Charleston Gray)	wcgwmB253
Cla003994	Cucumber (Chinese Long) v2	cuwmB224
Cla003994	Cucumber (Chinese Long) v2	cuwmB033
Cla003994	Cucumber (Chinese Long) v2	cuwmB492