Carg00253-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTGCGCAGCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTTGTTTCTCGATCCTCTAAACATTTAGACACCTCATGGGTTTTTAAAATGTTTTTAAATCTTTCTGTTGCAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGAAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCCTTGGGTTCTGCCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTGCGCAGCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGAAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCCTTGGGTTCTGCCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTGCGCAGCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGAAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCCTTGGGTTCTGCCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLCLGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG
BLAST of Carg00253-RA vs. NCBI nr
Match: XP_022957254.1 (LOB domain-containing protein 33-like [Cucurbita moschata]) HSP 1 Score: 390.6 bits (1002), Expect = 3.5e-105 Identity = 208/218 (95.41%), Postives = 211/218 (96.79%), Query Frame = 0
BLAST of Carg00253-RA vs. NCBI nr
Match: XP_023006079.1 (LOB domain-containing protein 33-like [Cucurbita maxima]) HSP 1 Score: 388.3 bits (996), Expect = 1.8e-104 Identity = 208/218 (95.41%), Postives = 209/218 (95.87%), Query Frame = 0
BLAST of Carg00253-RA vs. NCBI nr
Match: XP_023548244.1 (LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 361.7 bits (927), Expect = 1.8e-96 Identity = 204/223 (91.48%), Postives = 205/223 (91.93%), Query Frame = 0
BLAST of Carg00253-RA vs. NCBI nr
Match: XP_004147712.1 (PREDICTED: LOB domain-containing protein 33 [Cucumis sativus] >KGN50569.1 hypothetical protein Csa_5G182740 [Cucumis sativus]) HSP 1 Score: 279.6 bits (714), Expect = 8.8e-72 Identity = 147/205 (71.71%), Postives = 167/205 (81.46%), Query Frame = 0
BLAST of Carg00253-RA vs. NCBI nr
Match: XP_008461694.1 (PREDICTED: LOB domain-containing protein 33-like [Cucumis melo]) HSP 1 Score: 277.3 bits (708), Expect = 4.4e-71 Identity = 147/206 (71.36%), Postives = 166/206 (80.58%), Query Frame = 0
BLAST of Carg00253-RA vs. TAIR10
Match: AT5G06080.1 (LOB domain-containing protein 33) HSP 1 Score: 151.0 bits (380), Expect = 8.6e-37 Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 0
BLAST of Carg00253-RA vs. TAIR10
Match: AT3G58190.1 (lateral organ boundaries-domain 29) HSP 1 Score: 131.0 bits (328), Expect = 9.2e-31 Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 0
BLAST of Carg00253-RA vs. TAIR10
Match: AT2G45420.1 (LOB domain-containing protein 18) HSP 1 Score: 130.2 bits (326), Expect = 1.6e-30 Identity = 61/100 (61.00%), Postives = 77/100 (77.00%), Query Frame = 0
BLAST of Carg00253-RA vs. TAIR10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein) HSP 1 Score: 124.4 bits (311), Expect = 8.6e-29 Identity = 76/182 (41.76%), Postives = 104/182 (57.14%), Query Frame = 0
BLAST of Carg00253-RA vs. TAIR10
Match: AT4G00210.1 (LOB domain-containing protein 31) HSP 1 Score: 122.5 bits (306), Expect = 3.3e-28 Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 0
BLAST of Carg00253-RA vs. Swiss-Prot
Match: sp|Q9LHS8|LBD33_ARATH (LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 1.5e-35 Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 0
BLAST of Carg00253-RA vs. Swiss-Prot
Match: sp|Q9M2J7|LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 1.7e-29 Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 0
BLAST of Carg00253-RA vs. Swiss-Prot
Match: sp|O22131|LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2) HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29 Identity = 61/100 (61.00%), Postives = 77/100 (77.00%), Query Frame = 0
BLAST of Carg00253-RA vs. Swiss-Prot
Match: sp|Q9SLB6|LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27 Identity = 76/182 (41.76%), Postives = 104/182 (57.14%), Query Frame = 0
BLAST of Carg00253-RA vs. Swiss-Prot
Match: sp|Q5UG13|LBD_ORYSJ (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 2.0e-27 Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 0
BLAST of Carg00253-RA vs. TrEMBL
Match: tr|A0A0A0KNX8|A0A0A0KNX8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=4 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 5.8e-72 Identity = 147/205 (71.71%), Postives = 167/205 (81.46%), Query Frame = 0
BLAST of Carg00253-RA vs. TrEMBL
Match: tr|A0A1S3CGM1|A0A1S3CGM1_CUCME (LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE=4 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 2.9e-71 Identity = 147/206 (71.36%), Postives = 166/206 (80.58%), Query Frame = 0
BLAST of Carg00253-RA vs. TrEMBL
Match: tr|W9R256|W9R256_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025355 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.7e-39 Identity = 102/215 (47.44%), Postives = 124/215 (57.67%), Query Frame = 0
BLAST of Carg00253-RA vs. TrEMBL
Match: tr|A0A2P5BAL0|A0A2P5BAL0_PARAD (Lateral organ boundaries domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_256100 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 8.5e-39 Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 0
BLAST of Carg00253-RA vs. TrEMBL
Match: tr|A0A2P5CX80|A0A2P5CX80_9ROSA (Lateral organ boundaries domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_269980 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38 Identity = 82/106 (77.36%), Postives = 91/106 (85.85%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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