CSPI04G04570 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G04570
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 2978375 .. 2978976 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACGGACGACACTCTGTCTCTTGTTTTTATATCCCAATTCACATTTAAACAGAGACAAAAAGTAACAAAAAACCAAAAGAAGAAAAAAAAGAAAAACAGAGAGGAAAACACAATCAATCAATTTGTTTGAAGAAGCATGGGGAAATCGGAATCGGCCAAAGAATGTAAGAGACACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCTTGTCTTCGAGAAAAGCTTCAACAATTTCATCAATCTCCCAACTATTCCGATTCTCAATCAACTTTCTCTTCCCCTTCTTCTTCTTCCTCCGATTTTTTCTTCTCCGCCGATTCCTCTCGCCGCCACCGCCGCCACCACCGTCGTAACGCCTCCGAGTTCGTCACTGGGTCGATGGCGGTTGACTTGTTAGCGGACAAGCTGAAGAAGACCGGTTCCATTAGGATCTCTACCGATGGCGGCACCGGCGCTGGCGTTAAAGGAAAGAAGAAACTTGGGTTTTGGTCAAGGTTGTTGCTCCGCCCAAAAGCTCTGTATTTTAGTTGATTTATCATTGTATGAGATTTTATTTAGTAAATGAATTAGAATTTTTCTTTTTTGTTCTTTAATCATT

mRNA sequence

ATGGGGAAATCGGAATCGGCCAAAGAATGTAAGAGACACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCTTGTCTTCGAGAAAAGCTTCAACAATTTCATCAATCTCCCAACTATTCCGATTCTCAATCAACTTTCTCTTCCCCTTCTTCTTCTTCCTCCGATTTTTTCTTCTCCGCCGATTCCTCTCGCCGCCACCGCCGCCACCACCGTCGTAACGCCTCCGAGTTCGTCACTGGGTCGATGGCGGTTGACTTGTTAGCGGACAAGCTGAAGAAGACCGGTTCCATTAGGATCTCTACCGATGGCGGCACCGGCGCTGGCGTTAAAGGAAAGAAGAAACTTGGGTTTTGGTCAAGGTTGTTGCTCCGCCCAAAAGCTCTGTATTTTAGTTGA

Coding sequence (CDS)

ATGGGGAAATCGGAATCGGCCAAAGAATGTAAGAGACACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCTTGTCTTCGAGAAAAGCTTCAACAATTTCATCAATCTCCCAACTATTCCGATTCTCAATCAACTTTCTCTTCCCCTTCTTCTTCTTCCTCCGATTTTTTCTTCTCCGCCGATTCCTCTCGCCGCCACCGCCGCCACCACCGTCGTAACGCCTCCGAGTTCGTCACTGGGTCGATGGCGGTTGACTTGTTAGCGGACAAGCTGAAGAAGACCGGTTCCATTAGGATCTCTACCGATGGCGGCACCGGCGCTGGCGTTAAAGGAAAGAAGAAACTTGGGTTTTGGTCAAGGTTGTTGCTCCGCCCAAAAGCTCTGTATTTTAGTTGA
Homology
[Close]
BLAST of CSPI04G04570 vs. TrEMBL
Match: A0A0A0KZB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026920 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.4e-68
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60
           MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS 120
           ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS
Sbjct: 61  ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS 120

Query: 121 RLLLRPKALYFS 133
           RLLLRPKALYFS
Sbjct: 121 RLLLRPKALYFS 132

[Close]
BLAST of CSPI04G04570 vs. TrEMBL
Match: A0A067K3Z2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18663 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.7e-13
Identity = 56/132 (42.42%), Postives = 72/132 (54.55%), Query Frame = 1 

Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSP-------NYSDSQSTFSSPSSS 60
           MG SE  + CK HP HN   G+CPSCLREKL + + +P         + S S+F S SS+
Sbjct: 1   MGFSEFQQACKEHPYHNHKQGVCPSCLREKLSKLYVAPLNDKEAAAIALSSSSFMSLSSA 60

Query: 61  SSDFFFSADSSR-RHRRHHRRNASEFVTG-SMAVDLLADKLKKTGSIRISTDGGTGAGVK 120
           SS    S D  R R   HH RN S+ +   S  V +  + LKK+ S+   T+G  G   K
Sbjct: 61  SSSNHMSPDHHRPRRLNHHHRNVSDIMHSISFRVSIAGNGLKKSRSLAFVTEGKNG---K 120

Query: 121 GKKKLGFWSRLL 124
            K K GFWS+LL
Sbjct: 121 KKNKKGFWSKLL 129

[Close]
BLAST of CSPI04G04570 vs. TrEMBL
Match: B9H4Q6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s07300g PE=4 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-10
Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 1 

Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSD---- 60
           MG SE  K CK HP H+   G+C SCLR++L Q       +  QS   +P SSSS     
Sbjct: 22  MGVSEPGKVCKNHPYHDQKQGVCASCLRDRLTQLIY---VNTLQSAVLAPPSSSSSPDHP 81

Query: 61  FFFSADSSRRHRRHHRRNASE-FVTGSMAVDL-LADKLKKTGSIRISTDGGTGAGVKGKK 120
           + F A ++   RR H RN S+ +  GS++  + + ++LKK+ SI   T   TG    GKK
Sbjct: 82  YSFVASTNHVSRRQHHRNISDNYNMGSVSFRVSVGNRLKKSRSIAFVTRNHTGEVKNGKK 141

Query: 121 KLGFWSRLL 124
             GFW++LL
Sbjct: 142 SNGFWTKLL 147

[Close]
BLAST of CSPI04G04570 vs. TrEMBL
Match: V4SR02_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026640mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.7e-09
Identity = 57/140 (40.71%), Postives = 71/140 (50.71%), Query Frame = 1 

Query: 1   MGKSES-AKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSD----SQSTFSSPSSSSS 60
           MG  ES    CKRH N   L G+CP CLRE+L Q   + +       S+S  SSP SSS 
Sbjct: 14  MGCCESEVAYCKRHQNRKQLQGVCPFCLRERLSQLAAATSLKKTSMLSRSRTSSPHSSSP 73

Query: 61  DFFFSADSSRRH-----RRHHRRNASEFVTGSMAVDLLADK---LKKTGSIRISTDGGTG 120
             + SA +S  +     RR H R ASE + GS++  L A     LKK+ SI        G
Sbjct: 74  AGYSSASASSSNNKSPSRRRHNRVASEII-GSISFVLSAGSNIGLKKSRSIAFVPSNFVG 133

Query: 121 AGVKGKKKLGFWSRLLLRPK 128
                KKK GFWS+LL R +
Sbjct: 134 ERKSDKKKQGFWSKLLHRDR 152

[Close]
BLAST of CSPI04G04570 vs. TrEMBL
Match: F6GZH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1679g00010 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-07
Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 1 

Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFH--QSPNYSDSQSTFSSPSS-SSSDF 60
           M  SE+  +CK+HP    LPG+C +CLRE+L Q +  +S N + +    SS SS SSS  
Sbjct: 3   MVASEAGGKCKKHPEQEQLPGVCSACLRERLSQLYGCKSQNKAVNMMGVSSCSSLSSSPP 62

Query: 61  FFSADSS---RRHRRHHRRNASEFVTGSMAVDL---LADKLKKTGSIRISTDGGTGAGVK 120
           + SA SS     +R +H R ASE VT  +A+ +       LKK+ S+ +   G  G G  
Sbjct: 63  YSSASSSTLVSPNRSNHYRRASE-VTAKIAMVIGGGHGGGLKKSRSVAVVPSGRGGDG-- 122

Query: 121 GKKKLGFWSRLL 124
             KK GFWS+LL
Sbjct: 123 KTKKGGFWSKLL 131

[Close]
BLAST of CSPI04G04570 vs. NCBI nr
Match: gi|778690424|ref|XP_011653117.1| (PREDICTED: uncharacterized protein LOC105435176 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60
           MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS 120
           ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS
Sbjct: 61  ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS 120

Query: 121 RLLLRPKALYFS 133
           RLLLRPKALYFS
Sbjct: 121 RLLLRPKALYFS 132

[Close]
BLAST of CSPI04G04570 vs. NCBI nr
Match: gi|659107682|ref|XP_008453802.1| (PREDICTED: uncharacterized protein LOC103494420 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 8.1e-64
Identity = 128/133 (96.24%), Postives = 130/133 (97.74%), Query Frame = 1 

Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60
           MGKSESAKECKRHPN+NLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  ADSSRRHRR-HHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFW 120
           ADSSRRHRR HHRRNASEFVTGSMAVDLLADKLKK+GSIRIS DG TGAGVKGKKKLGFW
Sbjct: 61  ADSSRRHRRHHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVKGKKKLGFW 120

Query: 121 SRLLLRPKALYFS 133
           SRLLLRPKALYFS
Sbjct: 121 SRLLLRPKALYFS 133

[Close]
BLAST of CSPI04G04570 vs. NCBI nr
Match: gi|1009146188|ref|XP_015890746.1| (PREDICTED: uncharacterized protein LOC107425283 [Ziziphus jujuba])

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 62/133 (46.62%), Postives = 77/133 (57.89%), Query Frame = 1 

Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPN--------YSDSQSTFSSPSS 60
           MG SES + C +HPN N  PG+C SCLRE+L Q + S N        Y ++ S   SPSS
Sbjct: 1   MGWSESGERCMKHPNTNQTPGVCSSCLRERLSQLNVSNNMKTAMGAYYYNNTSLSQSPSS 60

Query: 61  SSSDFFFSADSSRRHRRHHRRNASEFVTGSMAVDL-LADKLKKTGSIRISTDGGTGAGVK 120
           SSS +   + +S R RRHH RN SE   GS++  L +   LKK+ SI   T       VK
Sbjct: 61  SSSTYDEISSASSRRRRHHHRNVSE-AMGSISFMLNVGSGLKKSRSIAFVTKAHDFGDVK 120

Query: 121 -GKKKLGFWSRLL 124
            GKKK GFWS+LL
Sbjct: 121 SGKKKPGFWSKLL 132

[Close]
BLAST of CSPI04G04570 vs. NCBI nr
Match: gi|802673591|ref|XP_012081623.1| (PREDICTED: uncharacterized protein LOC105641647 [Jatropha curcas])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 56/132 (42.42%), Postives = 72/132 (54.55%), Query Frame = 1 

Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSP-------NYSDSQSTFSSPSSS 60
           MG SE  + CK HP HN   G+CPSCLREKL + + +P         + S S+F S SS+
Sbjct: 1   MGFSEFQQACKEHPYHNHKQGVCPSCLREKLSKLYVAPLNDKEAAAIALSSSSFMSLSSA 60

Query: 61  SSDFFFSADSSR-RHRRHHRRNASEFVTG-SMAVDLLADKLKKTGSIRISTDGGTGAGVK 120
           SS    S D  R R   HH RN S+ +   S  V +  + LKK+ S+   T+G  G   K
Sbjct: 61  SSSNHMSPDHHRPRRLNHHHRNVSDIMHSISFRVSIAGNGLKKSRSLAFVTEGKNG---K 120

Query: 121 GKKKLGFWSRLL 124
            K K GFWS+LL
Sbjct: 121 KKNKKGFWSKLL 129

[Close]
BLAST of CSPI04G04570 vs. NCBI nr
Match: gi|743861753|ref|XP_011031202.1| (PREDICTED: uncharacterized protein LOC105130409 [Populus euphratica])

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 54/129 (41.86%), Postives = 73/129 (56.59%), Query Frame = 1 

Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSP--SSSSSDFF 60
           MG SE  K CK HP H+   G+C SCLRE+L Q       + SQS   +P  SSSS D  
Sbjct: 1   MGVSEPGKVCKNHPYHDQKQGVCASCLRERLTQLIY---VNTSQSAVLAPPSSSSSPDHP 60

Query: 61  FSADSSRRH---RRHHRRNASEFVTGSMAVDL-LADKLKKTGSIRISTDGGTGAGVKGKK 120
           FS+ +S  H   R+HHR  +  +  GS++  + ++++LKK+ SI   T   TG    GKK
Sbjct: 61  FSSVASTNHVSRRQHHRNISDNYNMGSVSFRVRVSNRLKKSRSIAFVTRNHTGEVKNGKK 120

Query: 121 KLGFWSRLL 124
             GFW+ LL
Sbjct: 121 SNGFWTNLL 126

The following BLAST results are available for this feature:
BLAST of CSPI04G04570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G04570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZB2_CUCSA8.4e-68100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026920 PE=4 SV=1[more]
A0A067K3Z2_JATCU7.7e-1342.42Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18663 PE=4 SV=1[more]
B9H4Q6_POPTR3.6e-1039.53Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s07300g PE=4 SV=2[more]
V4SR02_9ROSI6.7e-0940.71Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026640mg PE=4 SV=1[more]
F6GZH7_VITVI2.8e-0740.91Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1679g00010 PE=4 SV=... [more]
BLAST of CSPI04G04570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G04570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778690424|ref|XP_011653117.1|1.2e-67100.00PREDICTED: uncharacterized protein LOC105435176 [Cucumis sativus][more]
gi|659107682|ref|XP_008453802.1|8.1e-6496.24PREDICTED: uncharacterized protein LOC103494420 [Cucumis melo][more]
gi|1009146188|ref|XP_015890746.1|1.4e-1546.62PREDICTED: uncharacterized protein LOC107425283 [Ziziphus jujuba][more]
gi|802673591|ref|XP_012081623.1|1.1e-1242.42PREDICTED: uncharacterized protein LOC105641647 [Jatropha curcas][more]
gi|743861753|ref|XP_011031202.1|1.6e-1141.86PREDICTED: uncharacterized protein LOC105130409 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008004UPF0503
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G04570.1CSPI04G04570.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008004Uncharacterised protein family UPF0503PFAMPF05340DUF740coord: 6..78
score: 1.
NoneNo IPR availablePANTHERPTHR34046FAMILY NOT NAMEDcoord: 1..123
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G04570Cla010663Watermelon (97103) v1cpiwmB315
CSPI04G04570Csa4G026920Cucumber (Chinese Long) v2cpicuB182
CSPI04G04570MELO3C017596Melon (DHL92) v3.5.1cpimeB310
CSPI04G04570ClCG07G017490Watermelon (Charleston Gray)cpiwcgB336
CSPI04G04570Lsi07G001630Bottle gourd (USVL1VR-Ls)cpilsiB303
CSPI04G04570MELO3C017596.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G04570CsaV3_UNG148160Cucumber (Chinese Long) v3cpicucB229
CSPI04G04570Cla97C07G144550Watermelon (97103) v2cpiwmbB326
CSPI04G04570Bhi01G001948Wax gourdcpiwgoB378
CSPI04G04570Cucsa.093660Cucumber (Gy14) v1cgycpiB103
CSPI04G04570CmoCh16G007510Cucurbita moschata (Rifu)cmocpiB332
CSPI04G04570Cp4.1LG01g09310Cucurbita pepo (Zucchini)cpecpiB403
CSPI04G04570Cp4.1LG14g01110Cucurbita pepo (Zucchini)cpecpiB223
CSPI04G04570CsGy4G004480Cucumber (Gy14) v2cgybcpiB168
CSPI04G04570Carg05803Silver-seed gourdcarcpiB1057
CSPI04G04570Carg14205Silver-seed gourdcarcpiB0980
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G04570Cucurbita maxima (Rimu)cmacpiB342
CSPI04G04570Cucurbita maxima (Rimu)cmacpiB721
CSPI04G04570Cucurbita moschata (Rifu)cmocpiB714
CSPI04G04570Cucurbita moschata (Rifu)cmocpiB715
CSPI04G04570Watermelon (97103) v1cpiwmB333
CSPI04G04570Cucurbita pepo (Zucchini)cpecpiB406
CSPI04G04570Silver-seed gourdcarcpiB0981
CSPI04G04570Cucumber (Chinese Long) v3cpicucB213
CSPI04G04570Cucumber (Chinese Long) v3cpicucB228
CSPI04G04570Cucumber (Chinese Long) v3cpicucB230
CSPI04G04570Watermelon (97103) v2cpiwmbB273