Cp4.1LG01g09310 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g09310
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 4286697 .. 4287104 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAATCGGAATCGGCGAAAGATTGCAAGAGGCACCCAAATCACAGACTCCTGCCCGGAATTTGCCCTTCTTGTCTCCGAGAAAGTCTTCAACGCTTCAATAACCAATCTTCAATCTATTCCGATTCTGTTTCCACCTTCTCTTCTTCTTCCTCTTCCTTTCCTCACTCCTCCGAGTTTTTCTTCTCCGGCGACTCTCCACGGCGGACACGCCACCATCACAAGAGGAACGCCTCCGAGATGGTCATGAGGTCGAGGGCGGCGGATTTGTTTGGGGATAAGGTGAAGATGGGCGGCGAGGGAGGGAAAAAGAAAGGTGGGTTTTGGTCGAGATTGATGGGTGGGCGGAAGGCGTTTCATTTCCATTCCCAACCCAAAGTTTGTTGTAGGGAAATTATGGGTTAG

mRNA sequence

ATGGGGAAATCGGAATCGGCGAAAGATTGCAAGAGGCACCCAAATCACAGACTCCTGCCCGGAATTTGCCCTTCTTGTCTCCGAGAAAGTCTTCAACGCTTCAATAACCAATCTTCAATCTATTCCGATTCTGTTTCCACCTTCTCTTCTTCTTCCTCTTCCTTTCCTCACTCCTCCGAGTTTTTCTTCTCCGGCGACTCTCCACGGCGGACACGCCACCATCACAAGAGGAACGCCTCCGAGATGGTCATGAGGTCGAGGGCGGCGGATTTGTTTGGGGATAAGGTGAAGATGGGCGGCGAGGGAGGGAAAAAGAAAGGTGGGTTTTGGTCGAGATTGATGGGTGGGCGGAAGGCGTTTCATTTCCATTCCCAACCCAAAGTTTGTTGTAGGGAAATTATGGGTTAG

Coding sequence (CDS)

ATGGGGAAATCGGAATCGGCGAAAGATTGCAAGAGGCACCCAAATCACAGACTCCTGCCCGGAATTTGCCCTTCTTGTCTCCGAGAAAGTCTTCAACGCTTCAATAACCAATCTTCAATCTATTCCGATTCTGTTTCCACCTTCTCTTCTTCTTCCTCTTCCTTTCCTCACTCCTCCGAGTTTTTCTTCTCCGGCGACTCTCCACGGCGGACACGCCACCATCACAAGAGGAACGCCTCCGAGATGGTCATGAGGTCGAGGGCGGCGGATTTGTTTGGGGATAAGGTGAAGATGGGCGGCGAGGGAGGGAAAAAGAAAGGTGGGTTTTGGTCGAGATTGATGGGTGGGCGGAAGGCGTTTCATTTCCATTCCCAACCCAAAGTTTGTTGTAGGGAAATTATGGGTTAG

Protein sequence

MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSEFFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKVKMGGEGGKKKGGFWSRLMGGRKAFHFHSQPKVCCREIMG
BLAST of Cp4.1LG01g09310 vs. TrEMBL
Match: A0A0A0KZB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026920 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.3e-31
Identity = 86/135 (63.70%), Postives = 94/135 (69.63%), Query Frame = 1

Query: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESAK+CKRHPNH LLPGICPSCLRE LQ+F +QS  YSDS STFSS SSS   SS+
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQF-HQSPNYSDSQSTFSSPSSS---SSD 60

Query: 61  FFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKVKM---------GGEG----GKKKG 120
           FFFS DS RR R HH+RNASE V  S A DL  DK+K          GG G    GKKK 
Sbjct: 61  FFFSADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKL 120

Query: 121 GFWSRLMGGRKAFHF 123
           GFWSRL+   KA +F
Sbjct: 121 GFWSRLLLRPKALYF 131

BLAST of Cp4.1LG01g09310 vs. TrEMBL
Match: A0A0D2QD40_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G041400 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = 1

Query: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MG S+S+  C +HP+H+   G+CPSCLRE L R  + SS Y DS    + SSS  P  + 
Sbjct: 1   MGFSKSSYKCNKHPDHQENQGVCPSCLRERLSRLCSSSSSYKDSSLRIAPSSSFSPVENR 60

Query: 61  FFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKVKMGGEGGKKKGGFWSRLM 115
           +  S  +     +  K++ S        A +  +  ++   GGKKK GFWS+L+
Sbjct: 61  WGSSSFTVNVDTNGFKKSRS-------VAFIARNDEEVVNNGGKKKKGFWSKLL 107

BLAST of Cp4.1LG01g09310 vs. TrEMBL
Match: F6GZH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1679g00010 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 1

Query: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRF----NNQSSIYSDSVSTFSSSSSSFP 60
           M  SE+   CK+HP    LPG+C +CLRE L +     +   ++    VS+ SS SSS P
Sbjct: 3   MVASEAGGKCKKHPEQEQLPGVCSACLRERLSQLYGCKSQNKAVNMMGVSSCSSLSSSPP 62

Query: 61  HSSEFFFSGDSPRRTRHHHKRNASEMVMR-------------SRAADLFGDKVKMGGEGG 118
           +SS    +  SP R+ H+  R ASE+  +              ++  +       GG+G 
Sbjct: 63  YSSASSSTLVSPNRSNHY--RRASEVTAKIAMVIGGGHGGGLKKSRSVAVVPSGRGGDGK 122

BLAST of Cp4.1LG01g09310 vs. TrEMBL
Match: A0A103YD06_CYNCS (Uncharacterized protein family UPF0503 OS=Cynara cardunculus var. scolymus GN=Ccrd_014808 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 46/134 (34.33%), Postives = 64/134 (47.76%), Query Frame = 1

Query: 7   AKDCKRHPNHRLLPGICPSCLRESLQRFNNQ----------SSIYSDSVSTFSSSSSSF- 66
           A  CK+HP H+  PG+C  CLRE L + ++           SS  S SVS+ SS SSS  
Sbjct: 11  ANGCKKHPKHQQSPGVCSLCLRERLSKISSSSSSRAVRDVPSSSSSSSVSSVSSVSSSHC 70

Query: 67  -----PHSSEFFFSGDSPRRTRHHHKRNAS---EMVMRSRAADLFGDKVKMGGEGGKKKG 122
                 H +       +PR+T      N+     ++ +SR+   F +K+       KKK 
Sbjct: 71  SSNAQSHMASPMHGHRNPRKTYDFDDENSKGYVSLMKKSRSMAFFSEKMVESDGKKKKKD 130

BLAST of Cp4.1LG01g09310 vs. TrEMBL
Match: A0A067K3Z2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18663 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-06
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 1

Query: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRF------NNQSSIYSDSVSTFSSSSSS 60
           MG SE  + CK HP H    G+CPSCLRE L +       + +++  + S S+F S SS+
Sbjct: 1   MGFSEFQQACKEHPYHNHKQGVCPSCLREKLSKLYVAPLNDKEAAAIALSSSSFMSLSSA 60

Query: 61  FPHSSEFFFSGD--SPRRTRHHHKRNASEMVMRSRAADLFGDKVKMG--------GEGGK 120
              SS    S D   PRR  HHH+  +  M   S    + G+ +K          G+ GK
Sbjct: 61  ---SSSNHMSPDHHRPRRLNHHHRNVSDIMHSISFRVSIAGNGLKKSRSLAFVTEGKNGK 120

Query: 121 KKG--GFWSRL--MGGRKAFHF 123
           KK   GFWS+L  + G+K  +F
Sbjct: 121 KKNKKGFWSKLLHLKGKKEVNF 139

BLAST of Cp4.1LG01g09310 vs. NCBI nr
Match: gi|778690424|ref|XP_011653117.1| (PREDICTED: uncharacterized protein LOC105435176 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-30
Identity = 86/135 (63.70%), Postives = 94/135 (69.63%), Query Frame = 1

Query: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESAK+CKRHPNH LLPGICPSCLRE LQ+F +QS  YSDS STFSS SSS   SS+
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQF-HQSPNYSDSQSTFSSPSSS---SSD 60

Query: 61  FFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKVKM---------GGEG----GKKKG 120
           FFFS DS RR R HH+RNASE V  S A DL  DK+K          GG G    GKKK 
Sbjct: 61  FFFSADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKL 120

Query: 121 GFWSRLMGGRKAFHF 123
           GFWSRL+   KA +F
Sbjct: 121 GFWSRLLLRPKALYF 131

BLAST of Cp4.1LG01g09310 vs. NCBI nr
Match: gi|659107682|ref|XP_008453802.1| (PREDICTED: uncharacterized protein LOC103494420 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-29
Identity = 84/136 (61.76%), Postives = 93/136 (68.38%), Query Frame = 1

Query: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESAK+CKRHPN+ LLPGICPSCLRE LQ+F +QS  YSDS STFSS SSS   SS+
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQF-HQSPNYSDSQSTFSSPSSS---SSD 60

Query: 61  FFFSGDSPRR-TRHHHKRNASEMVMRSRAADLFGDKVKMGGE-------------GGKKK 120
           FFFS DS RR  RHHH+RNASE V  S A DL  DK+K  G               GKKK
Sbjct: 61  FFFSADSSRRHRRHHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVKGKKK 120

Query: 121 GGFWSRLMGGRKAFHF 123
            GFWSRL+   KA +F
Sbjct: 121 LGFWSRLLLRPKALYF 132

BLAST of Cp4.1LG01g09310 vs. NCBI nr
Match: gi|720054231|ref|XP_010272981.1| (PREDICTED: uncharacterized protein LOC104608638 [Nelumbo nucifera])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 46/123 (37.40%), Postives = 72/123 (58.54%), Query Frame = 1

Query: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MG SE+   CK+HP HR  PG+C SCLRE L + ++ +S  + + S+ SSS SS P+SS+
Sbjct: 1   MGLSEAQARCKKHPKHRQSPGVCSSCLRERLSQLSSATSRRTTAASSCSSSLSSSPYSSD 60

Query: 61  FFFSGDSPRRTRHHHK--------RNASEMVMRSRA-ADLFGDKVKMGGEGGKKKGGFWS 115
              S  SP    +  +        ++ ++ +MRSR+ A +  +++       KKKGGFWS
Sbjct: 61  -SSSCSSPLSQPNASQVKGPVCFLKSGNDGLMRSRSIAFVTRNRIAAEITDEKKKGGFWS 120

BLAST of Cp4.1LG01g09310 vs. NCBI nr
Match: gi|1009146188|ref|XP_015890746.1| (PREDICTED: uncharacterized protein LOC107425283 [Ziziphus jujuba])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 50/135 (37.04%), Postives = 66/135 (48.89%), Query Frame = 1

Query: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSI-------YSDSVSTFSSSSS 60
           MG SES + C +HPN    PG+C SCLRE L + N  +++       Y ++ S   S SS
Sbjct: 1   MGWSESGERCMKHPNTNQTPGVCSSCLRERLSQLNVSNNMKTAMGAYYYNNTSLSQSPSS 60

Query: 61  SFPHSSEFFFSGDSPRRTRHHHKRNASEMV------------MRSRAADLFGDKVKMGGE 115
           S     E   S  S RR RHHH RN SE +            ++   +  F  K    G+
Sbjct: 61  SSSTYDE--ISSASSRRRRHHH-RNVSEAMGSISFMLNVGSGLKKSRSIAFVTKAHDFGD 120

BLAST of Cp4.1LG01g09310 vs. NCBI nr
Match: gi|823144914|ref|XP_012472295.1| (PREDICTED: uncharacterized protein LOC105789468 [Gossypium raimondii])

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = 1

Query: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MG S+S+  C +HP+H+   G+CPSCLRE L R  + SS Y DS    + SSS  P  + 
Sbjct: 1   MGFSKSSYKCNKHPDHQENQGVCPSCLRERLSRLCSSSSSYKDSSLRIAPSSSFSPVENR 60

Query: 61  FFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKVKMGGEGGKKKGGFWSRLM 115
           +  S  +     +  K++ S        A +  +  ++   GGKKK GFWS+L+
Sbjct: 61  WGSSSFTVNVDTNGFKKSRS-------VAFIARNDEEVVNNGGKKKKGFWSKLL 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZB2_CUCSA8.3e-3163.70Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026920 PE=4 SV=1[more]
A0A0D2QD40_GOSRA1.4e-0635.96Uncharacterized protein OS=Gossypium raimondii GN=B456_003G041400 PE=4 SV=1[more]
F6GZH7_VITVI1.9e-0634.33Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1679g00010 PE=4 SV=... [more]
A0A103YD06_CYNCS1.9e-0634.33Uncharacterized protein family UPF0503 OS=Cynara cardunculus var. scolymus GN=Cc... [more]
A0A067K3Z2_JATCU3.2e-0635.92Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18663 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778690424|ref|XP_011653117.1|1.2e-3063.70PREDICTED: uncharacterized protein LOC105435176 [Cucumis sativus][more]
gi|659107682|ref|XP_008453802.1|2.3e-2961.76PREDICTED: uncharacterized protein LOC103494420 [Cucumis melo][more]
gi|720054231|ref|XP_010272981.1|1.9e-0737.40PREDICTED: uncharacterized protein LOC104608638 [Nelumbo nucifera][more]
gi|1009146188|ref|XP_015890746.1|1.2e-0637.04PREDICTED: uncharacterized protein LOC107425283 [Ziziphus jujuba][more]
gi|823144914|ref|XP_012472295.1|2.0e-0635.96PREDICTED: uncharacterized protein LOC105789468 [Gossypium raimondii][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008004UPF0503
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g09310.1Cp4.1LG01g09310.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008004Uncharacterised protein family UPF0503PFAMPF05340DUF740coord: 6..71
score: 7.
NoneNo IPR availablePANTHERPTHR34046FAMILY NOT NAMEDcoord: 1..118
score: 4.7

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g09310Cucurbita pepo (Zucchini)cpecpeB073
Cp4.1LG01g09310Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG01g09310Cucurbita pepo (Zucchini)cpecpeB385
Cp4.1LG01g09310Cucumber (Gy14) v1cgycpeB0001
Cp4.1LG01g09310Cucumber (Gy14) v1cgycpeB0219
Cp4.1LG01g09310Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g09310Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g09310Cucurbita maxima (Rimu)cmacpeB876
Cp4.1LG01g09310Cucurbita moschata (Rifu)cmocpeB312
Cp4.1LG01g09310Cucurbita moschata (Rifu)cmocpeB613
Cp4.1LG01g09310Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g09310Cucurbita moschata (Rifu)cmocpeB813
Cp4.1LG01g09310Wild cucumber (PI 183967)cpecpiB406
Cp4.1LG01g09310Wild cucumber (PI 183967)cpecpiB468
Cp4.1LG01g09310Cucumber (Chinese Long) v2cpecuB407
Cp4.1LG01g09310Cucumber (Chinese Long) v2cpecuB469
Cp4.1LG01g09310Bottle gourd (USVL1VR-Ls)cpelsiB326
Cp4.1LG01g09310Bottle gourd (USVL1VR-Ls)cpelsiB377
Cp4.1LG01g09310Watermelon (Charleston Gray)cpewcgB374
Cp4.1LG01g09310Watermelon (Charleston Gray)cpewcgB404
Cp4.1LG01g09310Watermelon (97103) v1cpewmB406
Cp4.1LG01g09310Watermelon (97103) v1cpewmB443
Cp4.1LG01g09310Melon (DHL92) v3.5.1cpemeB416
Cp4.1LG01g09310Melon (DHL92) v3.5.1cpemeB434
Cp4.1LG01g09310Cucumber (Gy14) v2cgybcpeB509
Cp4.1LG01g09310Cucumber (Gy14) v2cgybcpeB808
Cp4.1LG01g09310Melon (DHL92) v3.6.1cpemedB487
Cp4.1LG01g09310Melon (DHL92) v3.6.1cpemedB509
Cp4.1LG01g09310Silver-seed gourdcarcpeB0562
Cp4.1LG01g09310Silver-seed gourdcarcpeB1417
Cp4.1LG01g09310Cucumber (Chinese Long) v3cpecucB0504
Cp4.1LG01g09310Cucumber (Chinese Long) v3cpecucB0516
Cp4.1LG01g09310Cucumber (Chinese Long) v3cpecucB0581
Cp4.1LG01g09310Wax gourdcpewgoB0511