Carg14205 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14205
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_045 : 587675 .. 588073 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAATCGGAGTCGGCGAAAGAATGCAAGAGGCACCCAAATCACAGACTCCTGCCCGGAATTTGCCCTTCTTGTCTCCGAGAAAGTCTTCAACGCTTCAATAATCAATCTTCAATCTATTCCGATTCTGTTTCCACCTTCTCTTCTTCTTCCTCTTCCTTTCCTCACTCCTCCGAGTTTTTCTTCTCCGGCGACTCTCCTCGGCGGCCACGCCACCATCACAAGAGGAACGCCTCCGAGATGGTCATGAGGTCGAGGGCGGCGGATTTGTTTGGGGATGAGCTGAAGATGGGCGGCGAGGGAGGGAAAAAGAAAGGTGGGTTTTGGTCGAGATTGATGGGTGGGCGGAAGGCGTTTCATTTCCATTTCCATTCCCATCCCAAAGTTTCTTTGTAG

mRNA sequence

ATGGGGAAATCGGAGTCGGCGAAAGAATGCAAGAGGCACCCAAATCACAGACTCCTGCCCGGAATTTGCCCTTCTTGTCTCCGAGAAAGTCTTCAACGCTTCAATAATCAATCTTCAATCTATTCCGATTCTGTTTCCACCTTCTCTTCTTCTTCCTCTTCCTTTCCTCACTCCTCCGAGTTTTTCTTCTCCGGCGACTCTCCTCGGCGGCCACGCCACCATCACAAGAGGAACGCCTCCGAGATGGTCATGAGGTCGAGGGCGGCGGATTTGTTTGGGGATGAGCTGAAGATGGGCGGCGAGGGAGGGAAAAAGAAAGGTGGGTTTTGGTCGAGATTGATGGGTGGGCGGAAGGCGTTTCATTTCCATTTCCATTCCCATCCCAAAGTTTCTTTGTAG

Coding sequence (CDS)

ATGGGGAAATCGGAGTCGGCGAAAGAATGCAAGAGGCACCCAAATCACAGACTCCTGCCCGGAATTTGCCCTTCTTGTCTCCGAGAAAGTCTTCAACGCTTCAATAATCAATCTTCAATCTATTCCGATTCTGTTTCCACCTTCTCTTCTTCTTCCTCTTCCTTTCCTCACTCCTCCGAGTTTTTCTTCTCCGGCGACTCTCCTCGGCGGCCACGCCACCATCACAAGAGGAACGCCTCCGAGATGGTCATGAGGTCGAGGGCGGCGGATTTGTTTGGGGATGAGCTGAAGATGGGCGGCGAGGGAGGGAAAAAGAAAGGTGGGTTTTGGTCGAGATTGATGGGTGGGCGGAAGGCGTTTCATTTCCATTTCCATTCCCATCCCAAAGTTTCTTTGTAG

Protein sequence

MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSEFFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGEGGKKKGGFWSRLMGGRKAFHFHFHSHPKVSL

Homology

[Close]

BLAST of Carg14205 vs. NCBI nr
Match: XP_023544931.1 (uncharacterized protein LOC111804380 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.5 bits (428), Expect = 7.8e-39
Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSXXXXXXXXXXXXXX 60
           MGKSESAK+CKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVS XXXXXXXXXXXXX
Sbjct: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNASEMVMRSRAADLFGDELKMGGEGGKKKGGFWSRLMGGRKAF 120
           XXXXXXXXXXXXXXXXX ASEMVMRSRAADLFGD++KMGGEGGKKKGGFWSRLMGGRKAF
Sbjct: 61  XXXXXXXXXXXXXXXXXXASEMVMRSRAADLFGDKVKMGGEGGKKKGGFWSRLMGGRKAF 120

Query: 121 H 122
           H
Sbjct: 121 H 121

[Close]

BLAST of Carg14205 vs. NCBI nr
Match: XP_022989609.1 (uncharacterized protein LOC111486643 [Cucurbita maxima])

HSP 1 Score: 163.3 bits (412), Expect = 5.6e-37
Identity = 118/131 (90.08%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSXXXXXXXXXXXXXX 60
           MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIY     XXXXXXXXXXXXXX
Sbjct: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNASEMVMRSRAADLFGDELKMGGEGGKKKGGFWSRLMGGRKAF 120
           XXXXXXXXXXXXXXXXXNASEMVMRSRAADLFGD+LKM GEGGKKKGGFWSRLMGGRKAF
Sbjct: 61  XXXXXXXXXXXXXXXXXNASEMVMRSRAADLFGDKLKMSGEGGKKKGGFWSRLMGGRKAF 120

Query: 121 HXXXXXXPKVS 132
           H      PKVS
Sbjct: 121 H--FHSQPKVS 129

[Close]

BLAST of Carg14205 vs. NCBI nr
Match: XP_022929275.1 (uncharacterized protein LOC111435907 [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 3.8e-17
Identity = 63/139 (45.32%), Postives = 70/139 (50.36%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSXXXXXXXXXXXXXX 60
           MGKSESAKECKRH NH  LPGICPSCLRE LQ+    S  Y+DS S              
Sbjct: 1   MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSSISYADSRS-----TSSSSFLKS 60

Query: 61  XXXXXXXXXXXXXXXXXNASEMVMRSRAADLFGDELKMG--------GEGGKKKGGFWSR 120
                            NASE+   S AADLFGD++K          G GGKKK GFWSR
Sbjct: 61  SESFFSGNTSWRRRHTRNASELFTGSMAADLFGDKVKKSSSIRISADGGGGKKKVGFWSR 120

Query: 121 LMGGRKAFHXXXXXXPKVS 132
            +   KA +      PKVS
Sbjct: 121 FLVRPKALY--FHSHPKVS 132

[Close]

BLAST of Carg14205 vs. NCBI nr
Match: XP_011653117.1 (PREDICTED: uncharacterized protein LOC105435176 [Cucumis sativus] >KGN53216.1 hypothetical protein Csa_4G026920 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 89/134 (66.42%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSXXXXXXXXXXXXXX 60
           MGKSESAKECKRHPNH LLPGICPSCLRE LQ+F +QS  YSDS S     XXXXXXXXX
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQF-HQSPNYSDSQS---TFXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNASEMVMRSRAADLFGDELKM---------GGEG----GKKKG 120
           XXXXXXXXXXXXXXXXX  SE V  S A DL  D+LK          GG G    GKKK 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXSEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKL 120

Query: 121 GFWSRLMGGRKAFH 122
           GFWSRL+   KA +
Sbjct: 121 GFWSRLLLRPKALY 130

[Close]

BLAST of Carg14205 vs. NCBI nr
Match: XP_008453802.1 (PREDICTED: uncharacterized protein LOC103494420 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 87/134 (64.93%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSXXXXXXXXXXXXXX 60
           MGKSESAKECKRHPN+ LLPGICPSCLRE LQ+F +QS  YSDS S    XXXXXXXXXX
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQF-HQSPNYSDSQS--TFXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNASEMVMRSRAADLFGDELKMGGE-------------GGKKKG 120
           XXXXXXXXXXXXXXXXX  SE V  S A DL  D+LK  G               GKKK 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXSEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVKGKKKL 120

Query: 121 GFWSRLMGGRKAFH 122
           GFWSRL+   KA +
Sbjct: 121 GFWSRLLLRPKALY 131

[Close]

BLAST of Carg14205 vs. TAIR10
Match: AT1G22470.1 (unknown protein)

HSP 1 Score: 42.7 bits (99), Expect = 2.0e-04
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 0


Query: 10 CKRHPNHRLLPGICPSCLRESLQRFNNQSSIYS 43
          CK+HP HR  PGIC  CL ESL + +++   YS
Sbjct: 41 CKKHPKHRQSPGICSLCLNESLSKLSSEFYDYS 73

[Close]

BLAST of Carg14205 vs. TAIR10
Match: AT1G35210.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 5.8e-04
Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 0


Query: 3  KSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSS 40
          K+++A  CK+HP HR  PG+C  CL E L  F   +S
Sbjct: 24 KTKNAVFCKKHPKHRQSPGVCSLCLNERLSLFIKAAS 60

[Close]

BLAST of Carg14205 vs. TrEMBL
Match: tr|A0A0A0KZB2|A0A0A0KZB2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026920 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 89/134 (66.42%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSXXXXXXXXXXXXXX 60
           MGKSESAKECKRHPNH LLPGICPSCLRE LQ+F +QS  YSDS S     XXXXXXXXX
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQF-HQSPNYSDSQS---TFXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNASEMVMRSRAADLFGDELKM---------GGEG----GKKKG 120
           XXXXXXXXXXXXXXXXX  SE V  S A DL  D+LK          GG G    GKKK 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXSEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKL 120

Query: 121 GFWSRLMGGRKAFH 122
           GFWSRL+   KA +
Sbjct: 121 GFWSRLLLRPKALY 130

[Close]

BLAST of Carg14205 vs. TrEMBL
Match: tr|A0A1S3BWL8|A0A1S3BWL8_CUCME (uncharacterized protein LOC103494420 OS=Cucumis melo OX=3656 GN=LOC103494420 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.8e-15
Identity = 87/134 (64.93%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSXXXXXXXXXXXXXX 60
           MGKSESAKECKRHPN+ LLPGICPSCLRE LQ+F +QS  YSDS S    XXXXXXXXXX
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQF-HQSPNYSDSQS--TFXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNASEMVMRSRAADLFGDELKMGGE-------------GGKKKG 120
           XXXXXXXXXXXXXXXXX  SE V  S A DL  D+LK  G               GKKK 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXSEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVKGKKKL 120

Query: 121 GFWSRLMGGRKAFH 122
           GFWSRL+   KA +
Sbjct: 121 GFWSRLLLRPKALY 131

[Close]

BLAST of Carg14205 vs. TrEMBL
Match: tr|A0A1U8NYE1|A0A1U8NYE1_GOSHI (uncharacterized protein LOC107952332 OS=Gossypium hirsutum OX=3635 GN=LOC107952332 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1  MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDS 45
          MG S+S+ +C +HP+H+   G+CPSCLRE L R  + SS Y DS
Sbjct: 1  MGFSKSSYKCNKHPDHQENQGVCPSCLRERLSRLCSSSSSYKDS 44

[Close]

BLAST of Carg14205 vs. TrEMBL
Match: tr|A0A0D2QD40|A0A0D2QD40_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G041400 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1  MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDS 45
          MG S+S+ +C +HP+H+   G+CPSCLRE L R  + SS Y DS
Sbjct: 1  MGFSKSSYKCNKHPDHQENQGVCPSCLRERLSRLCSSSSSYKDS 44

[Close]

BLAST of Carg14205 vs. TrEMBL
Match: tr|A0A2P5R917|A0A2P5R917_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19783 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1  MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDS 45
          MG S+S+ +C +HP+H+   G+CPSCLRE L R  + SS Y DS
Sbjct: 1  MGFSKSSYKCNKHPDHQENQGVCPSCLRERLSRLCSSSSSYKDS 44

The following BLAST results are available for this feature:

BLAST of Carg14205 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544931.1	7.8e-39	95.87	uncharacterized protein LOC111804380 [Cucurbita pepo subsp. pepo]	[more]
XP_022989609.1	5.6e-37	90.08	uncharacterized protein LOC111486643 [Cucurbita maxima]	[more]
XP_022929275.1	3.8e-17	45.32	uncharacterized protein LOC111435907 [Cucurbita moschata]	[more]
XP_011653117.1	1.6e-15	66.42	PREDICTED: uncharacterized protein LOC105435176 [Cucumis sativus] >KGN53216.1 hy...	[more]
XP_008453802.1	1.3e-14	64.93	PREDICTED: uncharacterized protein LOC103494420 [Cucumis melo]	[more]

BLAST of Carg14205 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22470.1	2.0e-04	51.52	unknown protein	[more]
AT1G35210.1	5.8e-04	45.95	unknown protein	[more]

BLAST of Carg14205 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14205 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZB2\|A0A0A0KZB2_CUCSA	1.0e-15	66.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026920 PE=4 SV=1	[more]
tr\|A0A1S3BWL8\|A0A1S3BWL8_CUCME	8.8e-15	64.93	uncharacterized protein LOC103494420 OS=Cucumis melo OX=3656 GN=LOC103494420 PE=...	[more]
tr\|A0A1U8NYE1\|A0A1U8NYE1_GOSHI	4.1e-04	52.27	uncharacterized protein LOC107952332 OS=Gossypium hirsutum OX=3635 GN=LOC1079523...	[more]
tr\|A0A0D2QD40\|A0A0D2QD40_GOSRA	4.1e-04	52.27	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G041400 PE=4 ...	[more]
tr\|A0A2P5R917\|A0A2P5R917_GOSBA	4.1e-04	52.27	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19783 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008004	UPF0503

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14205-RA	Carg14205-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008004	Uncharacterised protein family UPF0503	PFAM	PF05340	DUF740	coord: 6..55 e-value: 9.3E-6 score: 24.7
None	No IPR available	PANTHER	PTHR34046	FAMILY NOT NAMED	coord: 2..115

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14205	Csa4G026920	Cucumber (Chinese Long) v2	carcuB0957
Carg14205	CSPI04G04570	Wild cucumber (PI 183967)	carcpiB0980
Carg14205	Cucsa.093660	Cucumber (Gy14) v1	carcgyB1057
Carg14205	Lsi07G001630	Bottle gourd (USVL1VR-Ls)	carlsiB858
Carg14205	Cp4.1LG01g09310	Cucurbita pepo (Zucchini)	carcpeB1302
Carg14205	CsGy4G004480	Cucumber (Gy14) v2	carcgybB0930
Carg14205	CsaV3_UNG148160	Cucumber (Chinese Long) v3	carcucB0984

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14205	Silver-seed gourd	carcarB602
Carg14205	Silver-seed gourd	carcarB646
Carg14205	Cucumber (Gy14) v2	carcgybB0932
Carg14205	Cucumber (Gy14) v2	carcgybB0931
Carg14205	Cucumber (Gy14) v1	carcgyB1058
Carg14205	Cucumber (Gy14) v1	carcgyB1056
Carg14205	Cucurbita maxima (Rimu)	carcmaB1286
Carg14205	Cucurbita maxima (Rimu)	carcmaB1287
Carg14205	Cucurbita maxima (Rimu)	carcmaB1288
Carg14205	Cucurbita maxima (Rimu)	carcmaB1289
Carg14205	Cucurbita moschata (Rifu)	carcmoB1258
Carg14205	Cucurbita moschata (Rifu)	carcmoB1259
Carg14205	Cucurbita pepo (Zucchini)	carcpeB1300
Carg14205	Cucurbita pepo (Zucchini)	carcpeB1301
Carg14205	Cucurbita pepo (Zucchini)	carcpeB1304
Carg14205	Wild cucumber (PI 183967)	carcpiB0981
Carg14205	Wild cucumber (PI 183967)	carcpiB0982
Carg14205	Cucumber (Chinese Long) v2	carcuB0958
Carg14205	Cucumber (Chinese Long) v2	carcuB0959
Carg14205	Cucumber (Chinese Long) v3	carcucB0985
Carg14205	Cucumber (Chinese Long) v3	carcucB0982
Carg14205	Cucumber (Chinese Long) v3	carcucB0987
Carg14205	Bottle gourd (USVL1VR-Ls)	carlsiB855
Carg14205	Bottle gourd (USVL1VR-Ls)	carlsiB859
Carg14205	Melon (DHL92) v3.5.1	carmeB0926
Carg14205	Melon (DHL92) v3.5.1	carmeB0924
Carg14205	Melon (DHL92) v3.6.1	carmedB0930
Carg14205	Melon (DHL92) v3.6.1	carmedB0932
Carg14205	Watermelon (Charleston Gray)	carwcgB0915
Carg14205	Watermelon (Charleston Gray)	carwcgB0916
Carg14205	Watermelon (97103) v1	carwmB0940
Carg14205	Watermelon (97103) v1	carwmB0942
Carg14205	Watermelon (97103) v2	carwmbB0987
Carg14205	Watermelon (97103) v2	carwmbB0989
Carg14205	Wax gourd	carwgoB1086
Carg14205	Wax gourd	carwgoB1088