CSPI01G13950 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G13950
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationChr1 : 9536412 .. 9538771 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTTTCAACCGTTCAAATAAATTGATTTCTCTTCCTCTTCTTCCTTTGCTTCAGCCGAACTCCGCTTCCCTCACCGTCTTCTCTCTTCACGTCTCACCTGCCGCGTCTCCTAGCCGCCCGTTCCTCCTCGCGTTGCCGCTTATCTGACGCCCAGACGAGCGGAGCCGACGTCTCCTTCGCTGCAGCTGGAGTTCGTCGCGCCGCCGTGTGGTTGTTTCACACCCGTCGTCCGAAGCCTTCGCCGCTGCGACTGCGTTGCCCATCTGCCGCCGCCGGTCCCGTCAACCACTGAAGTTAGGTACAGAGTTTGGGAATGGGTTTGGTAGTAATCTTAGCATTCATCTTTATCGAGTTAGGGCTGATTTCACGATAGGCAAAGGCTGAGCAGAAAAGCAAGATGCAAACCCTGGAATTTTGTAACGAAGAAGAATCGCAAAAAGCAGTGTCGTGGTTTTAGGGTTTTGGGTTTAGAGTGCTTTGGCCTTCTTCCACATTTCACCTTATGGTTCGAACCACTTTCCCATTTACTTGCATTTTCAATTTCAGTTCTGGCCGTTTATGTCGCTTTACCATCTTGCTATCCATAGGAATTTTCTGCATTACTCGTATGCTGTAAGTTAAACCTCCAAACTTCTTCTCTTTTTGTTTTCTTTTTTGTGAAATAATGCTCTGGGAAATGCTTAAATGCTATTTTTGTGGCAAGCAAAGAGTGGTGGTATAGAAAATTTTTCGGACATACTAGAAATTTTCTGCTCTACTACAAGAACTTTTTGGGTCTCTTTAAGTAAATCTATCAGTGGTAGGATTTGCTTTAGATTATGTTTTTATAGAGCTTATAACCAATGTTTATTCACCAACTTAATTACAAAAATTTTGTTCCTTAAACATCAATTATTGGGAATTCGGATTTTGGAAGCTCAGTAGTTGATTAATAACTCATCAATACCATTTATCTTTCGTAATTCAACTTAGGTTAAGAACAATATCTTATCCACATTCACATCATACCTGTATATATCTTTTAGATGATTACACATGACTTATGCCTTACGAATTAAATATTTAATTTGGCCTCTACATGTCTAATACAGAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAAGGGAAAATGCCTCAAAATGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAATGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCTGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCACAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGGTGGGTCGACTAGATATATCCGTGATTTACTTCAGGGAAATGGTTGCAATGGGAATTGAACCTGATTTGCTTACTTATACAGCTTTGATAGAGAGTTATGGTCGATTTGGAAACCTTGAAGAAGCTTTGACACTCCTCAAAGAGATGAAGCTTAATAACATCCGTCCTTCAAGCTATATTTACAGGTCCCTTATCAGAAATTCAATGACGATGAAGAAGGTGGAATTGGCTACGGACCTTCTCAATGAAATGAAATTAAGTAAATCAGAACTTGCTCGTCCAGAGGATTTCAAACGAAGAAAAATGTAACCAATTGCATAGTTTCACAGCAGACTTTGAGATTGATAAGCATGTGAATGTCATGGCTTTAATCTTCAAAGTGAGATCTGCCAGAGTGACTGCATGCATAGGTAATATTTCTACCTATTTATCTACTTCTCTTATATCTGACATGAAATACACAAATTGTTGTCATAAGTTGCAATAGAAGTCTTGTGACGAATTTTGGAGATTCATTTTAGGACCAATATACAAAAAC

mRNA sequence

ATGAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAAGGGAAAATGCCTCAAAATGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAATGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCTGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCACAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGGTGGGTCGACTAGATATATCCGTGATTTACTTCAGGGAAATGGTTGCAATGGGAATTGAACCTGATTTGCTTACTTATACAGCTTTGATAGAGAGTTATGGTCGATTTGGAAACCTTGAAGAAGCTTTGACACTCCTCAAAGAGATGAAGCTTAATAACATCCGTCCTTCAAGCTATATTTACAGGTCCCTTATCAGAAATTCAATGACGATGAAGAAGGTGGAATTGGCTACGGACCTTCTCAATGAAATGAAATTAAGTAAATCAGAACTTGCTCGTCCAGAGGATTTCAAACGAAGAAAAATGTAA

Coding sequence (CDS)

ATGAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAAGGGAAAATGCCTCAAAATGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAATGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCTGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCACAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGGTGGGTCGACTAGATATATCCGTGATTTACTTCAGGGAAATGGTTGCAATGGGAATTGAACCTGATTTGCTTACTTATACAGCTTTGATAGAGAGTTATGGTCGATTTGGAAACCTTGAAGAAGCTTTGACACTCCTCAAAGAGATGAAGCTTAATAACATCCGTCCTTCAAGCTATATTTACAGGTCCCTTATCAGAAATTCAATGACGATGAAGAAGGTGGAATTGGCTACGGACCTTCTCAATGAAATGAAATTAAGTAAATCAGAACTTGCTCGTCCAGAGGATTTCAAACGAAGAAAAATGTAA
Homology
[Close]
BLAST of CSPI01G13950 vs. Swiss-Prot
Match: PPR35_ARATH (Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana GN=At1g11900 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 6.4e-55
Identity = 134/318 (42.14%), Postives = 197/318 (61.95%), Query Frame = 1 

Query: 54  VKVGDED----LNQIIAPRENASKCIHEI-IDACIDKICRLGHLAAAAHLLKSLCNEKVF 113
           +  G+ED    L +I+   E+ SK I +I     ++K  R G+L+ A  LL+SL  + + 
Sbjct: 43  INTGEEDEEELLKKIVNHSESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNIC 102

Query: 114 KSSEAYDMVLLAASERGDTPLLCEVFKVALL--SCKSLSSASYMSFARAFTKTND-SKLL 173
                +  +L AA E  D  L C VF+  L+    + LSS  Y++ ARAF  T+D + L 
Sbjct: 103 LPISVFKNLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFINTDDCTYLT 162

Query: 174 ECVKEIIEIT-SQKCTVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 233
             +KEI E +   +  V+NRIIFAF+E R+IDK   I  +MK   C PD+ TYN +LD++
Sbjct: 163 SLLKEISESSLPYRLIVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDIL 222

Query: 234 GRAGRVDEILHIFVSMKEE-GIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPD 293
           GRAG V+EIL +  +MKE+  ++ +I++YNT++N +RK  R D+ ++ + EMV  GIEPD
Sbjct: 223 GRAGLVNEILGVLSTMKEDCSVSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPD 282

Query: 294 LLTYTALIESYGRFGNLEEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLN 353
           LL+YTA+I+S GR GN++E+L L  EMK   IRPS Y+YR+LI         + A  L +
Sbjct: 283 LLSYTAVIDSLGRSGNVKESLRLFDEMKQRQIRPSVYVYRALIDCLKKSGDFQSALQLSD 342

Query: 354 EMKLSKS-ELARPEDFKR 361
           E+K + S +LA P+DFKR
Sbjct: 343 ELKNTSSLDLAGPQDFKR 360

[Close]
BLAST of CSPI01G13950 vs. Swiss-Prot
Match: PP344_ARATH (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.8e-23
Identity = 62/161 (38.51%), Postives = 92/161 (57.14%), Query Frame = 1 

Query: 179  CTVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFV 238
            C + N +I  F +  E D A  +F +M      PDL TY++++D +   GRVDE LH F 
Sbjct: 926  CAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFK 985

Query: 239  SMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREM-VAMGIEPDLLTYTALIESYGRF 298
             +KE G+ PD+V YN +IN L K  RL+ +++ F EM  + GI PDL TY +LI + G  
Sbjct: 986  ELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIA 1045

Query: 299  GNLEEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELA 339
            G +EEA  +  E++   + P+ + + +LIR      K E A
Sbjct: 1046 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1086

[Close]
BLAST of CSPI01G13950 vs. Swiss-Prot
Match: PPR76_ARATH (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-22
Identity = 83/311 (26.69%), Postives = 149/311 (47.91%), Query Frame = 1 

Query: 56  VGDEDLNQIIAPRENASKCIHEIIDACIDKICR---------LGHLAAAAHLLKS---LC 115
           VG   L Q++A  +   K I ++    ++  CR         L  L A   L++    + 
Sbjct: 306 VGYNTLMQVLAKGKMVDKAI-QVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVE 365

Query: 116 NEKVFKSSEAYDMVLLAASERGDTP----LLCEVFKVALLSCKSLSSASYMSFARAFTKT 175
             K + +   Y  ++   S+ G       L C+++   +   +     SYMS   +    
Sbjct: 366 ISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERD----SYMSMLESLCGA 425

Query: 176 NDSKLLECVKEIIEITSQKCT----VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLY 235
              K +E ++ + +I  +       + N +  A  + ++I     +F +MK    +PD++
Sbjct: 426 G--KTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIF 485

Query: 236 TYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREM 295
           TYNI++   GR G VDE ++IF  ++     PDI+SYN+LIN L K G +D + + F+EM
Sbjct: 486 TYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEM 545

Query: 296 VAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKV 347
              G+ PD++TY+ L+E +G+   +E A +L +EM +   +P+   Y  L+       + 
Sbjct: 546 QEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRT 605

[Close]
BLAST of CSPI01G13950 vs. Swiss-Prot
Match: PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-21
Identity = 75/258 (29.07%), Postives = 129/258 (50.00%), Query Frame = 1 

Query: 96  AHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVALLSCKSLSSASYMSFARA 155
           AH+L   C    + ++     ++L+ ++       C+VF V L S +++    +  F   
Sbjct: 149 AHIL--FCARMYYDANSVLKEMVLSKAD-------CDVFDV-LWSTRNVCVPGFGVFDAL 208

Query: 156 FTKTNDSKLLECVKEIIEITSQ--------KCTVINRIIFAFSERREIDKAFQIFNQMKC 215
           F+   D  +LE   E I+  S+        K    N ++  F++  + D   + F  M  
Sbjct: 209 FSVLIDLGMLE---EAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIG 268

Query: 216 LSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINSLRKVGRLDI 275
               P ++TYNI++D + + G V+    +F  MK  G+ PD V+YN++I+   KVGRLD 
Sbjct: 269 AGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDD 328

Query: 276 SVIYFREMVAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMKLNNIRPSSYIYRSLI- 335
           +V +F EM  M  EPD++TY ALI  + +FG L   L   +EMK N ++P+   Y +L+ 
Sbjct: 329 TVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVD 388

Query: 336 ---RNSMTMKKVELATDL 342
              +  M  + ++   D+
Sbjct: 389 AFCKEGMMQQAIKFYVDM 393

[Close]
BLAST of CSPI01G13950 vs. Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.9e-21
Identity = 57/164 (34.76%), Postives = 94/164 (57.32%), Query Frame = 1 

Query: 183 NRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKE 242
           N ++ A  +  ++D AF+I  QM      P++ +Y+ ++D   +AGR DE L++F  M+ 
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437

Query: 243 EGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLEE 302
            GIA D VSYNTL++   KVGR + ++   REM ++GI+ D++TY AL+  YG+ G  +E
Sbjct: 438 LGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDE 497

Query: 303 ALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMK 347
              +  EMK  ++ P+   Y +LI         + A ++  E K
Sbjct: 498 VKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541

[Close]
BLAST of CSPI01G13950 vs. TrEMBL
Match: A0A0A0LXZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132170 PE=4 SV=1)

HSP 1 Score: 703.4 bits (1814), Expect = 1.5e-199
Identity = 361/363 (99.45%), Postives = 361/363 (99.45%), Query Frame = 1 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPRENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120
           LNQIIAP ENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCT 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKC 
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSM 240
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSM
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSM 240

Query: 241 KEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNL 300
           KEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNL
Sbjct: 241 KEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNL 300

Query: 301 EEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKR 360
           EEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKR
Sbjct: 301 EEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKR 360

Query: 361 RKM 364
           RKM
Sbjct: 361 RKM 363

[Close]
BLAST of CSPI01G13950 vs. TrEMBL
Match: A0A067EX48_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016395mg PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.8e-80
Identity = 173/360 (48.06%), Postives = 249/360 (69.17%), Query Frame = 1 

Query: 7   AIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCL---SHQSSGTKIFPNEVKVGDEDLNQ 66
           +I  +FL  +  N I S PVG+  I P +A       ++QS  T    +E  V +E LN+
Sbjct: 30  SISVSFLRRTKVNCITSVPVGSLWISPSFATVSKISGNYQSLVTGASLDEEDVTNEVLNR 89

Query: 67  IIAPRENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASE 126
           I+A  EN SK   E+ +  I+K+C+ G+++AA  LL+SL ++ +F  + AY+ VL+A++E
Sbjct: 90  ILASVENGSKSAKEMCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN-AYNCVLVASAE 149

Query: 127 RGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITS-QKCTV 186
             D  L  ++ K  L+S ++LSS  Y +FARAF  T+D ++LL  ++E+++I S +   V
Sbjct: 150 TNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIV 209

Query: 187 INRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMK 246
           +NRIIFAF++ R+I+KA  IF+ +K L C PDL TYNI+LD++GR GRV+++L+ F SMK
Sbjct: 210 VNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK 269

Query: 247 EEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLE 306
           E G+ PD +SYNTL+N+LRK+ RLD+ +IYFREM   GI+PDLLTYTALI+S+GR GN+E
Sbjct: 270 EAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIE 329

Query: 307 EALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKRR 362
           E+L L  +MK   IRPS Y+YRSLI N   M KV+LA  +  EM  S S+LA P+DFKR+
Sbjct: 330 ESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFKRK 388

[Close]
BLAST of CSPI01G13950 vs. TrEMBL
Match: B9HNJ0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07170g PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.8e-80
Identity = 180/365 (49.32%), Postives = 238/365 (65.21%), Query Frame = 1 

Query: 3   LYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAI--KCLSH--QSSGTKIFPNEVKVGD 62
           L+HL   R FL     N I S PVG+  I P +A   + + H  Q +    F  E ++ D
Sbjct: 19  LFHLHKVRFFLR---KNCITSIPVGSHWILPHFATITEVIGHYKQLTTRASFDGE-EIKD 78

Query: 63  EDLNQIIAPRENASKCI-HEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMV 122
           ++LNQ++   ENA +C   ++  A +  +C+ G L AA  LL+ L ++ +F    AY+++
Sbjct: 79  DNLNQMLEAVENAPECTTRKVGTAYVHNLCKAGTLFAAVRLLRLLRDKNIFLGPSAYNII 138

Query: 123 LLAASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDS-KLLECVKEIIEITS 182
           L+ ASE+ D  +L +VFK  +LS +SL S+ Y+  AR F K+ND  +LL  VKE+ E+T 
Sbjct: 139 LVTASEKNDVEILSQVFKDLILSFQSLPSSLYLKLARGFVKSNDDVQLLRLVKEVSELTF 198

Query: 183 QKCT-VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILH 242
              T V+NR IFAF+E  + DKA  IF QM+ L C PDL TYN +LD++GRAGR+DE+L 
Sbjct: 199 PSSTKVVNRFIFAFAECGQFDKAILIFEQMENLKCKPDLVTYNTVLDLLGRAGRIDEMLG 258

Query: 243 IFVSMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYG 302
            F SMKE GI PD +SYNTL+N L KVGRLD+  +YFR+MV  GIEPDLLTYTALI S+G
Sbjct: 259 EFASMKEAGILPDFISYNTLLNQLTKVGRLDLCSVYFRDMVGNGIEPDLLTYTALIWSFG 318

Query: 303 RFGNLEEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARP 361
           + GN+EE+L L  EMK   IRPS YIYRSLI +   M K+ELA   L EM  S S LA P
Sbjct: 319 QSGNIEESLRLFNEMKTKQIRPSIYIYRSLIASLKKMGKIELAMTFLEEMNASMSNLAGP 378

[Close]
BLAST of CSPI01G13950 vs. TrEMBL
Match: E0CU43_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00220 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.3e-78
Identity = 176/371 (47.44%), Postives = 242/371 (65.23%), Query Frame = 1 

Query: 2   SLYHLAIHRNF------LHYSYANRIASAPVGNSQIWPLYAIKCLS---HQSSGTKIFPN 61
           S++  + H N         + Y+N I++ P   S I P +AI   S   +QS  T+  P+
Sbjct: 14  SIFFRSFHSNLGPIAATRRHRYSNFISAIPDDVSWILPFFAILSKSIGSYQSLATEASPD 73

Query: 62  EVKVGDEDLNQIIAPRENASKCIHE-IIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSS 121
           E  V DE LN+I++  E + K   E +    IDK+ + G+ +AAA  ++SL ++ +F S 
Sbjct: 74  EEVVPDEFLNEILSDIERSPKFSSEKLCTTYIDKLLKAGNPSAAARFMQSLHDKHIFLSP 133

Query: 122 EAYDMVLLAASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEI 181
            AY+++L+AASE      L ++FK  L+S K LSS SY + A+ FTKT+DS LL+ V+E+
Sbjct: 134 NAYNLLLVAASEANAIDFLSQIFKDLLVSNKPLSSTSYFNVAKVFTKTDDSVLLKFVREV 193

Query: 182 IEIT-SQKCTVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRV 241
            E+T  +  T++NRII AF+E R+I+K+  IF+ MK L C PDL TYN +L  +GRAGR+
Sbjct: 194 SELTFPRNATILNRIIHAFAECRQIEKSLIIFDHMKSLKCKPDLITYNTVLGFLGRAGRL 253

Query: 242 DEILHIFVSMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTAL 301
           DE+LH F SMK   IAPDI+SYNTL+NSL+KVGRLD+ +++FREM   G++PDL TY AL
Sbjct: 254 DEMLHEFSSMKVANIAPDIISYNTLLNSLQKVGRLDLCLVFFREMGENGLKPDLRTYRAL 313

Query: 302 IESYGRFGNLEEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKS 361
           IE +G+ GNLEEAL L  EMK   I PS YIYRSLI  S  M KVELA  L  EM     
Sbjct: 314 IEGFGQSGNLEEALRLFSEMKQGQICPSIYIYRSLINYSKKMGKVELAMSLSEEMNACLP 373

[Close]
BLAST of CSPI01G13950 vs. TrEMBL
Match: A0A068V1R9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042110001 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 9.3e-77
Identity = 168/349 (48.14%), Postives = 223/349 (63.90%), Query Frame = 1 

Query: 19  NRIASAPVGNSQIWPLYAIKCL---SHQSSGTKIFPNEVKVGDEDLNQIIAPRENASKCI 78
           N + S P+G   IWP + I      SH+S  T+  P+   + D  LN+I++  EN++   
Sbjct: 46  NSVKSIPIGAFWIWPFFQILSYYVSSHRSIATQTSPSH-DMHDRILNEILSELENSAISC 105

Query: 79  HEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFK 138
            +I  + IDK+C  G L  AA LL+SL  +++F   +AY+++L AA E+ DT +L   FK
Sbjct: 106 EKICISKIDKLCSAGDLTTAARLLRSLREQRIFLGPQAYNILLQAAGEQDDTDILLHTFK 165

Query: 139 VALLSCKSLSSASYMSFARAFTKTNDSK-LLECVKEIIE-ITSQKCTVINRIIFAFSERR 198
             L+ C S+ SAS    A+A  K +D   LL+ V+E+ E I       +NRIIFAF E R
Sbjct: 166 DLLVFCNSIKSASCQILAKALVKESDDVFLLKFVREVSELIIPISAITLNRIIFAFGEFR 225

Query: 199 EIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYN 258
           +IDKA  IF +MK L C PDL TYN IL M+GR G+VD++LH F  MKE  IAPD +SYN
Sbjct: 226 QIDKALIIFEEMKNLKCKPDLVTYNTILVMLGRCGQVDDMLHKFAEMKEANIAPDTISYN 285

Query: 259 TLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMKLN 318
           T+INSLRKVGRLD+   +F+EM   G++PDL TYT LI+++GR GN+EEAL L  EMK  
Sbjct: 286 TIINSLRKVGRLDLCSAFFKEMGERGVQPDLQTYTPLIDNFGRSGNIEEALRLFDEMKHR 345

Query: 319 NIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKRRK 363
            IRPS Y+YRSLI N   M K++LAT   NEM    S L   +DFKR+K
Sbjct: 346 RIRPSIYVYRSLISNLNKMGKLKLATKFSNEMDACLSGLVGSKDFKRKK 393

[Close]
BLAST of CSPI01G13950 vs. TAIR10
Match: AT1G11900.1 (AT1G11900.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 216.1 bits (549), Expect = 3.6e-56
Identity = 134/318 (42.14%), Postives = 197/318 (61.95%), Query Frame = 1 

Query: 54  VKVGDED----LNQIIAPRENASKCIHEI-IDACIDKICRLGHLAAAAHLLKSLCNEKVF 113
           +  G+ED    L +I+   E+ SK I +I     ++K  R G+L+ A  LL+SL  + + 
Sbjct: 43  INTGEEDEEELLKKIVNHSESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNIC 102

Query: 114 KSSEAYDMVLLAASERGDTPLLCEVFKVALL--SCKSLSSASYMSFARAFTKTND-SKLL 173
                +  +L AA E  D  L C VF+  L+    + LSS  Y++ ARAF  T+D + L 
Sbjct: 103 LPISVFKNLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFINTDDCTYLT 162

Query: 174 ECVKEIIEIT-SQKCTVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 233
             +KEI E +   +  V+NRIIFAF+E R+IDK   I  +MK   C PD+ TYN +LD++
Sbjct: 163 SLLKEISESSLPYRLIVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDIL 222

Query: 234 GRAGRVDEILHIFVSMKEE-GIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPD 293
           GRAG V+EIL +  +MKE+  ++ +I++YNT++N +RK  R D+ ++ + EMV  GIEPD
Sbjct: 223 GRAGLVNEILGVLSTMKEDCSVSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPD 282

Query: 294 LLTYTALIESYGRFGNLEEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLN 353
           LL+YTA+I+S GR GN++E+L L  EMK   IRPS Y+YR+LI         + A  L +
Sbjct: 283 LLSYTAVIDSLGRSGNVKESLRLFDEMKQRQIRPSVYVYRALIDCLKKSGDFQSALQLSD 342

Query: 354 EMKLSKS-ELARPEDFKR 361
           E+K + S +LA P+DFKR
Sbjct: 343 ELKNTSSLDLAGPQDFKR 360

[Close]
BLAST of CSPI01G13950 vs. TAIR10
Match: AT4G31850.1 (AT4G31850.1 proton gradient regulation 3)

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-24
Identity = 62/161 (38.51%), Postives = 92/161 (57.14%), Query Frame = 1 

Query: 179  CTVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFV 238
            C + N +I  F +  E D A  +F +M      PDL TY++++D +   GRVDE LH F 
Sbjct: 926  CAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFK 985

Query: 239  SMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREM-VAMGIEPDLLTYTALIESYGRF 298
             +KE G+ PD+V YN +IN L K  RL+ +++ F EM  + GI PDL TY +LI + G  
Sbjct: 986  ELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIA 1045

Query: 299  GNLEEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELA 339
            G +EEA  +  E++   + P+ + + +LIR      K E A
Sbjct: 1046 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1086

[Close]
BLAST of CSPI01G13950 vs. TAIR10
Match: AT1G51965.1 (AT1G51965.1 ABA Overly-Sensitive 5)

HSP 1 Score: 109.0 bits (271), Expect = 6.2e-24
Identity = 83/311 (26.69%), Postives = 149/311 (47.91%), Query Frame = 1 

Query: 56  VGDEDLNQIIAPRENASKCIHEIIDACIDKICR---------LGHLAAAAHLLKS---LC 115
           VG   L Q++A  +   K I ++    ++  CR         L  L A   L++    + 
Sbjct: 306 VGYNTLMQVLAKGKMVDKAI-QVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVE 365

Query: 116 NEKVFKSSEAYDMVLLAASERGDTP----LLCEVFKVALLSCKSLSSASYMSFARAFTKT 175
             K + +   Y  ++   S+ G       L C+++   +   +     SYMS   +    
Sbjct: 366 ISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERD----SYMSMLESLCGA 425

Query: 176 NDSKLLECVKEIIEITSQKCT----VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLY 235
              K +E ++ + +I  +       + N +  A  + ++I     +F +MK    +PD++
Sbjct: 426 G--KTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIF 485

Query: 236 TYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREM 295
           TYNI++   GR G VDE ++IF  ++     PDI+SYN+LIN L K G +D + + F+EM
Sbjct: 486 TYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEM 545

Query: 296 VAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKV 347
              G+ PD++TY+ L+E +G+   +E A +L +EM +   +P+   Y  L+       + 
Sbjct: 546 QEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRT 605

[Close]
BLAST of CSPI01G13950 vs. TAIR10
Match: AT2G02150.1 (AT2G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 6.9e-23
Identity = 75/258 (29.07%), Postives = 129/258 (50.00%), Query Frame = 1 

Query: 96  AHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVALLSCKSLSSASYMSFARA 155
           AH+L   C    + ++     ++L+ ++       C+VF V L S +++    +  F   
Sbjct: 149 AHIL--FCARMYYDANSVLKEMVLSKAD-------CDVFDV-LWSTRNVCVPGFGVFDAL 208

Query: 156 FTKTNDSKLLECVKEIIEITSQ--------KCTVINRIIFAFSERREIDKAFQIFNQMKC 215
           F+   D  +LE   E I+  S+        K    N ++  F++  + D   + F  M  
Sbjct: 209 FSVLIDLGMLE---EAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIG 268

Query: 216 LSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINSLRKVGRLDI 275
               P ++TYNI++D + + G V+    +F  MK  G+ PD V+YN++I+   KVGRLD 
Sbjct: 269 AGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDD 328

Query: 276 SVIYFREMVAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMKLNNIRPSSYIYRSLI- 335
           +V +F EM  M  EPD++TY ALI  + +FG L   L   +EMK N ++P+   Y +L+ 
Sbjct: 329 TVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVD 388

Query: 336 ---RNSMTMKKVELATDL 342
              +  M  + ++   D+
Sbjct: 389 AFCKEGMMQQAIKFYVDM 393

[Close]
BLAST of CSPI01G13950 vs. TAIR10
Match: AT2G31400.1 (AT2G31400.1 genomes uncoupled 1)

HSP 1 Score: 102.8 bits (255), Expect = 4.5e-22
Identity = 57/164 (34.76%), Postives = 94/164 (57.32%), Query Frame = 1 

Query: 183 NRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKE 242
           N ++ A  +  ++D AF+I  QM      P++ +Y+ ++D   +AGR DE L++F  M+ 
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437

Query: 243 EGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLEE 302
            GIA D VSYNTL++   KVGR + ++   REM ++GI+ D++TY AL+  YG+ G  +E
Sbjct: 438 LGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDE 497

Query: 303 ALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMK 347
              +  EMK  ++ P+   Y +LI         + A ++  E K
Sbjct: 498 VKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541

[Close]
BLAST of CSPI01G13950 vs. NCBI nr
Match: gi|778659264|ref|XP_011654081.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis sativus])

HSP 1 Score: 703.4 bits (1814), Expect = 2.1e-199
Identity = 361/363 (99.45%), Postives = 361/363 (99.45%), Query Frame = 1 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPRENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120
           LNQIIAP ENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCT 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKC 
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSM 240
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSM
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSM 240

Query: 241 KEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNL 300
           KEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNL
Sbjct: 241 KEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNL 300

Query: 301 EEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKR 360
           EEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKR
Sbjct: 301 EEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKR 360

Query: 361 RKM 364
           RKM
Sbjct: 361 RKM 363

[Close]
BLAST of CSPI01G13950 vs. NCBI nr
Match: gi|778659267|ref|XP_011654087.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis sativus])

HSP 1 Score: 667.2 bits (1720), Expect = 1.7e-188
Identity = 343/345 (99.42%), Postives = 343/345 (99.42%), Query Frame = 1 

Query: 19  NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPRENASKCIHEI 78
           NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAP ENASKCIHEI
Sbjct: 2   NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASKCIHEI 61

Query: 79  IDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL 138
           IDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL
Sbjct: 62  IDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL 121

Query: 139 LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCTVINRIIFAFSERREIDKA 198
           LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKC VINRIIFAFSERREIDKA
Sbjct: 122 LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKA 181

Query: 199 FQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINS 258
           FQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINS
Sbjct: 182 FQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINS 241

Query: 259 LRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMKLNNIRPS 318
           LRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMKLNNIRPS
Sbjct: 242 LRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMKLNNIRPS 301

Query: 319 SYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKRRKM 364
           SYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKRRKM
Sbjct: 302 SYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKRRKM 346

[Close]
BLAST of CSPI01G13950 vs. NCBI nr
Match: gi|659071898|ref|XP_008462480.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis melo])

HSP 1 Score: 608.6 bits (1568), Expect = 7.1e-171
Identity = 313/364 (85.99%), Postives = 338/364 (92.86%), Query Frame = 1 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPRENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKV-FKSSEAYDMVLL 120
           LNQIIAPRENAS C HEI+DACIDKIC LGHLAAAA LLKSLCNEK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CTVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFV 240
           C+VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LDM+GRAGRV+EILH+FV
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDMLGRAGRVNEILHLFV 240

Query: 241 SMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFG 300
           SMK+EGIAPDIVSYNTLINSLRKVGRLDIS+IYFREMVAMGI+PDLLTYTALIES+GRFG
Sbjct: 241 SMKDEGIAPDIVSYNTLINSLRKVGRLDISLIYFREMVAMGIKPDLLTYTALIESFGRFG 300

Query: 301 NLEEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDF 360
           N+EEALTLLKEMKL  I PSSYIY+SLI NS  M KVELAT+LLNEMKLS+S+LARPEDF
Sbjct: 301 NIEEALTLLKEMKLKKICPSSYIYKSLIANSKKMGKVELATNLLNEMKLSESKLARPEDF 360

Query: 361 KRRK 363
           KRRK
Sbjct: 361 KRRK 364

[Close]
BLAST of CSPI01G13950 vs. NCBI nr
Match: gi|778659269|ref|XP_011654092.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X3 [Cucumis sativus])

HSP 1 Score: 513.8 bits (1322), Expect = 2.4e-142
Identity = 259/262 (98.85%), Postives = 260/262 (99.24%), Query Frame = 1 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPRENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120
           LNQIIAP ENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCT 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKC 
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSM 240
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSM
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSM 240

Query: 241 KEEGIAPDIVSYNTLINSLRKV 263
           KEEGIAPDIVSYNTLINSLRK+
Sbjct: 241 KEEGIAPDIVSYNTLINSLRKL 262

[Close]
BLAST of CSPI01G13950 vs. NCBI nr
Match: gi|659071901|ref|XP_008462492.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis melo])

HSP 1 Score: 449.5 bits (1155), Expect = 5.5e-123
Identity = 227/264 (85.98%), Postives = 245/264 (92.80%), Query Frame = 1 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPRENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKV-FKSSEAYDMVLL 120
           LNQIIAPRENAS C HEI+DACIDKIC LGHLAAAA LLKSLCNEK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CTVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFV 240
           C+VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LDM+GRAGRV+EILH+FV
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDMLGRAGRVNEILHLFV 240

Query: 241 SMKEEGIAPDIVSYNTLINSLRKV 263
           SMK+EGIAPDIVSYNTLINSLRK+
Sbjct: 241 SMKDEGIAPDIVSYNTLINSLRKL 264

The following BLAST results are available for this feature:
BLAST of CSPI01G13950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR35_ARATH6.4e-5542.14Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana GN... [more]
PP344_ARATH3.8e-2338.51Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidop... [more]
PPR76_ARATH1.1e-2226.69Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidop... [more]
PP143_ARATH1.2e-2129.07Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th... [more]
PP178_ARATH7.9e-2134.76Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop... [more]
BLAST of CSPI01G13950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXZ6_CUCSA1.5e-19999.45Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132170 PE=4 SV=1[more]
A0A067EX48_CITSI1.8e-8048.06Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016395mg PE=4 SV=1[more]
B9HNJ0_POPTR1.8e-8049.32Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07170g PE=4 SV=1[more]
E0CU43_VITVI1.3e-7847.44Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00220 PE=4 SV=... [more]
A0A068V1R9_COFCA9.3e-7748.14Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042110001 PE=4 SV=1[more]
BLAST of CSPI01G13950 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11900.13.6e-5642.14 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G31850.12.1e-2438.51 proton gradient regulation 3[more]
AT1G51965.16.2e-2426.69 ABA Overly-Sensitive 5[more]
AT2G02150.16.9e-2329.07 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G31400.14.5e-2234.76 genomes uncoupled 1[more]
BLAST of CSPI01G13950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778659264|ref|XP_011654081.1|2.1e-19999.45PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc... [more]
gi|778659267|ref|XP_011654087.1|1.7e-18899.42PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc... [more]
gi|659071898|ref|XP_008462480.1|7.1e-17185.99PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc... [more]
gi|778659269|ref|XP_011654092.1|2.4e-14298.85PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X3 [Cuc... [more]
gi|659071901|ref|XP_008462492.1|5.5e-12385.98PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13950.2CSPI01G13950.2mRNA
CSPI01G13950.1CSPI01G13950.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 166..192
score: 0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 199..243
score: 8.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 255..309
score: 3.5
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 233..266
score: 6.3E-6coord: 269..301
score: 2.4E-8coord: 166..196
score: 5.7E-5coord: 198..232
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 161..195
score: 8.21coord: 266..300
score: 12.584coord: 196..230
score: 12.332coord: 301..335
score: 6.796coord: 231..265
score: 11
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 145..292
score: 3.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 41..328
score: 2.3E
NoneNo IPR availablePANTHERPTHR24015:SF488SUBFAMILY NOT NAMEDcoord: 41..328
score: 2.3E