CsaV3_1G014130 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G014130
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein isoform X2
Locationchr1 : 9607914 .. 9609263 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCTTTACCATCTTGCTATCCATAGGAATTTTCTGCATTACTCGTATGCTGTAAGTTAAACCTCCAAACTTCTTCTCTTTTTGTTTTCTTTTTTGTGAAATAATGCTCTGGGAAATGCTTAAATGCTATTTTTGTGGCAAGCAAAGAGTGGTGGTATAGAAAAATTTTCGGACATACTAGAAATTTTCTGCTCTACTACGAAAACTTTTTGGGTCTCTTTAAGTAAATCTATCAGTGGTAGGATTTGCTTTAGATTATGTTTTTCTAGAGCTTATAGCCAATGTTTATTCACCAACTTAATTACAAAAATTTTGTTCCTTAAACATCAATTATTGGGAATTCGGATTTTGGAAGCTCAGTAGTTGATTAATAACTCATCAATACCATTTATCTTTCGTAATTCAACTTAGGTTAAGAACAATATCTTATCCACATTCTCATCATACCTGTATATATCTTTTAGATGATTACACATGACTTATGCCTTACGAATTAAATATTTAATTTGGCCTCTACATGTCTAATACAGAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAACGGAAAATGCCTCAAAATGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAATGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCGGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGGTGGGTCGACTAGATATATCCGTGATTTACTTCAGGGAAATGGTTGCAATGGGAATTGAACCTGATTTGCTTACTTATACAGCTTTGA

mRNA sequence

ATGTCGCTTTACCATCTTGCTATCCATAGGAATTTTCTGCATTACTCGTATGCTAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAACGGAAAATGCCTCAAAATGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAATGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCGGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGCTTTGA

Coding sequence (CDS)

ATGTCGCTTTACCATCTTGCTATCCATAGGAATTTTCTGCATTACTCGTATGCTAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAACGGAAAATGCCTCAAAATGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAATGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCGGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGCTTTGA

Protein sequence

MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINSLRKL
Homology
[Close]
BLAST of CsaV3_1G014130 vs. NCBI nr
Match: XP_011654092.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X3 [Cucumis sativus])

HSP 1 Score: 450.7 bits (1158), Expect = 3.5e-123
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120
           LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGR 227
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGR
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGR 226

[Close]
BLAST of CsaV3_1G014130 vs. NCBI nr
Match: XP_011654081.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis sativus] >KGN64856.1 hypothetical protein Csa_1G132170 [Cucumis sativus])

HSP 1 Score: 446.0 bits (1146), Expect = 8.6e-122
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120
           LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 224

[Close]
BLAST of CsaV3_1G014130 vs. NCBI nr
Match: XP_011654087.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis sativus])

HSP 1 Score: 410.2 bits (1053), Expect = 5.2e-111
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 

Query: 19  NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASKCIHEI 78
           NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASKCIHEI
Sbjct: 2   NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASKCIHEI 61

Query: 79  IDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL 138
           IDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL
Sbjct: 62  IDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL 121

Query: 139 LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKA 198
           LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKA
Sbjct: 122 LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKA 181

Query: 199 FQIFNQMKCLSCTPDLYTYNIILDMV 225
           FQIFNQMKCLSCTPDLYTYNIILDMV
Sbjct: 182 FQIFNQMKCLSCTPDLYTYNIILDMV 207

[Close]
BLAST of CsaV3_1G014130 vs. NCBI nr
Match: XP_008462492.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis melo])

HSP 1 Score: 380.6 bits (976), Expect = 4.4e-102
Identity = 193/227 (85.02%), Postives = 206/227 (90.75%), Query Frame = 0 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKV-FKSSEAYDMVLL 120
           LNQIIAP ENAS C HEI+DACIDKIC LGHLAAAA LLKSLCNEK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVG 226
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LDM+G
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDMLG 227

[Close]
BLAST of CsaV3_1G014130 vs. NCBI nr
Match: XP_008462480.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis melo])

HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100
Identity = 191/224 (85.27%), Postives = 203/224 (90.62%), Query Frame = 0 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKV-FKSSEAYDMVLL 120
           LNQIIAP ENAS C HEI+DACIDKIC LGHLAAAA LLKSLCNEK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILD 223
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LD
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLD 224

[Close]
BLAST of CsaV3_1G014130 vs. TrEMBL
Match: tr|A0A0A0LXZ6|A0A0A0LXZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132170 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 5.7e-122
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120
           LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 224

[Close]
BLAST of CsaV3_1G014130 vs. TrEMBL
Match: tr|A0A1S3CH34|A0A1S3CH34_CUCME (pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 2.9e-102
Identity = 193/227 (85.02%), Postives = 206/227 (90.75%), Query Frame = 0 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKV-FKSSEAYDMVLL 120
           LNQIIAP ENAS C HEI+DACIDKIC LGHLAAAA LLKSLCNEK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVG 226
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LDM+G
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDMLG 227

[Close]
BLAST of CsaV3_1G014130 vs. TrEMBL
Match: tr|A0A1S3CIJ8|A0A1S3CIJ8_CUCME (pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 9.4e-101
Identity = 191/224 (85.27%), Postives = 203/224 (90.62%), Query Frame = 0 

Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKV-FKSSEAYDMVLL 120
           LNQIIAP ENAS C HEI+DACIDKIC LGHLAAAA LLKSLCNEK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILD 223
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LD
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLD 224

[Close]
BLAST of CsaV3_1G014130 vs. TrEMBL
Match: tr|A0A2P5C2X1|A0A2P5C2X1_PARAD (Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_188960 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.8e-36
Identity = 99/218 (45.41%), Postives = 137/218 (62.84%), Query Frame = 0 

Query: 14  HYSYANRIASAPVGNSQIWPLYAIKCL---SHQSSGTKIFPNEVKVGDEDLNQIIAPTE- 73
           H   AN+I S PV     WPL+ +      + +S  TK  PNE +V    LN+I A T  
Sbjct: 44  HKCCANQIISFPVVFFWTWPLFIVASRFIGNSRSFSTKTSPNEEEV---VLNEIFAATAK 103

Query: 74  -NASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTP 133
            NA +   EI +A IDK+CR G+L+AAA  LKSL ++ VF SS AY+ +L AASE+ D  
Sbjct: 104 GNALRSTSEICNAYIDKLCRSGNLSAAARFLKSLHDKHVFISSNAYEALLAAASEKNDIG 163

Query: 134 LLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQKCIVINRIIF 193
           L+ +VF  A+ S +S    SY+  A+AF KTND ++L   +K+++E+T     V+NR I 
Sbjct: 164 LVSQVFIDAIGSSESWRPTSYLYIAKAFAKTNDYTRLFRFIKDVVELTFPSLKVLNRTIL 223

Query: 194 AFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVG 226
           AF+E R+ID+A  IF+Q+K L C PDL  YNIILD++G
Sbjct: 224 AFAEYRQIDQALLIFDQIKSLKCKPDLIMYNIILDILG 258

[Close]
BLAST of CsaV3_1G014130 vs. TrEMBL
Match: tr|A0A2I4H819|A0A2I4H819_9ROSI (pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Juglans regia OX=51240 GN=LOC109014315 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.8e-34
Identity = 89/214 (41.59%), Postives = 138/214 (64.49%), Query Frame = 0 

Query: 17  YANRIASAPVGNSQIWPLYAI---KCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASK 76
           Y N I S+ +G   IWP +A+       +    T+  PNE +V DE ++ I+    NA +
Sbjct: 42  YNNCITSSTLGFPLIWPFFAVINNFIGKYHLLTTQASPNEKEVTDEVISHILTTIINAQR 101

Query: 77  CIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEV 136
              ++    ++K+C  G+L+AAA +L+SL ++ +F S  AY+++L+AASER D  LL + 
Sbjct: 102 PNGKVC-TVVNKLCESGNLSAAARILQSLRDKHIFPSPIAYNLLLVAASERHDIDLLSQA 161

Query: 137 FKVALLSCKSLSSASYMSFARAFTKTNDS-KLLECVKEIIEITSQKCIVINRIIFAFSER 196
           FK  L+S  +LSS+SY+  A+AFTKT+DS +LL  ++E+  +TS    V+NRII AF+E 
Sbjct: 162 FKDLLVSRGALSSSSYLMVAKAFTKTDDSVQLLRFIEEVSALTSPSVTVLNRIISAFAEC 221

Query: 197 REIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGR 227
            ++DKA  I++ +K L C PDL TYN I+D++GR
Sbjct: 222 GQVDKALLIYDMIKSLRCKPDLVTYNTIMDILGR 254

The following BLAST results are available for this feature:
BLAST of CsaV3_1G014130 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654092.13.5e-123100.00PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X3 [Cuc... [more]
XP_011654081.18.6e-122100.00PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc... [more]
XP_011654087.15.2e-111100.00PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc... [more]
XP_008462492.14.4e-10285.02PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc... [more]
XP_008462480.11.4e-10085.27PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc... [more]
BLAST of CsaV3_1G014130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014130 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXZ6|A0A0A0LXZ6_CUCSA5.7e-122100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132170 PE=4 SV=1[more]
tr|A0A1S3CH34|A0A1S3CH34_CUCME2.9e-10285.02pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Cucumis melo... [more]
tr|A0A1S3CIJ8|A0A1S3CIJ8_CUCME9.4e-10185.27pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo... [more]
tr|A0A2P5C2X1|A0A2P5C2X1_PARAD4.8e-3645.41Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_188960 P... [more]
tr|A0A2I4H819|A0A2I4H819_9ROSI5.8e-3441.59pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Juglans regi... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G014130.1CsaV3_1G014130.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 140..262
e-value: 2.5E-24
score: 87.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 228..257
e-value: 1.7E-5
score: 24.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 215..249
e-value: 2.4E-8
score: 31.7
coord: 182..213
e-value: 3.0E-5
score: 21.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 182..223
e-value: 9.5E-11
score: 41.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 213..247
score: 12.332
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 178..212
score: 8.265
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 248..262
score: 5.601
NoneNo IPR availablePANTHERPTHR24015:SF488SUBFAMILY NOT NAMEDcoord: 95..261
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 95..261

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G014130CSPI01G13950Wild cucumber (PI 183967)cpicucB001
CsaV3_1G014130Cucsa.200380Cucumber (Gy14) v1cgycucB322
CsaV3_1G014130CsGy1G013950Cucumber (Gy14) v2cgybcucB002
CsaV3_1G014130Cla001852Watermelon (97103) v1cucwmB060
CsaV3_1G014130Lsi03G000590Bottle gourd (USVL1VR-Ls)cuclsiB048
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G014130Silver-seed gourdcarcucB0192
CsaV3_1G014130Cucurbita maxima (Rimu)cmacucB0188
CsaV3_1G014130Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G014130Cucurbita moschata (Rifu)cmocucB0172
CsaV3_1G014130Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G014130Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G014130Cucurbita pepo (Zucchini)cpecucB0996
CsaV3_1G014130Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G014130Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G014130Watermelon (Charleston Gray)cucwcgB016
CsaV3_1G014130Watermelon (97103) v2cucwmbB002
CsaV3_1G014130Wax gourdcucwgoB051