CsGy1G013950 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G013950
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pentatricopeptide repeat-containing protein isoform X2
Location	Chr1 : 9585346 .. 9588003 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTTTCAACCGTTCAAATAAATTGATTTCTCTTCCTCTTCTTCCTTTGCTTCAGCCGAACTCCGCTTCCCTCACCGTCTTCTCTCTTCACGTCTCACCCGCCGCGTCTCCTAGCCGCCCGTTCCTCCTCGCGTTGCCGCTTATCTGACGCCCAGACGAGCGGAGCCGACGTCTCCTTCGCTGCAGCTGGAGTTCGTCGCGCCGCCGTGTGGTTGTTTCACACCCGTCGTCCGAAGCCTTCGCCGCTGCCACTGCGTTGCCCATCTGCCGCCGCCGGTCCCGTCAACCACTGAAGTTAGGTACAGAGTTTGGGAATGGGTTTGGTAGTAATCTTAGCATTCATCTTTATCGAGTTAGGGCTGATTTCACCATAGGCAAAGGCTGAGCGGAAAAGCAAGATGCAAACCCTGGAATTTTGTAACGAAGAAGAATCGCAAAAAGCAGTGTCGTGGTTTTAGGGTTTTGGGTTTAGAGTGCTTTGGCCTTCTTCCACATTTCAGCTTATGGTTCGAACCACTTCCCCATTTACTTGCATTTTCAATTTCAGTTCTGGCCGTTTATGTCGCTTTACCATCTTGCTATCCATAGGAATTTTCTGCATTACTCGTATGCTGTAAGTTAAACCTCCAAACTTCTTCTCTTTTTGTTTTCTTTTTTGTGAAATAATGCTCTGGGAAATGCTTAAATGCTATTTTTGTGGCAAGCAAAGAGTGGTGGTATAGAAAATTTTTCGGACATACTAGAAATTTTCTGCTCTACTACGAAAACTTTTTGGGTCTCTTTAAGTAAATCTATCAGTGGTAGGATTTGCTTTAGATTATGTTTTTCTAGAGCTTGTAGCCAATGTTTATTCACCAACTTAATTACAAAAATTTTGTTCCTTAAACATCAATTATTGGGAATTCGGATTTTGGAAGCTCAGTAGTTGATTAATAACTCATCAATACCATTTATCTTTCGTAATTCAACTTAGGTTAAGAACAATATCTTATCCACATTCTCATCATACCTGTATATATCTTTTAGATGATTACACATGACTTATGCCTTACGAATTAAATATTTAATTTGGCCTCTACATGTCTAATACAGAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAACGGAAAATGCCTCAAACTGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAGTGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCGGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGGTGGGTCGACTAGATATATCCGTGATTTACTTCAGGGAAATGGTTGCAATGGGAATTGAACCTGATTTGCTTACTTATACAGCTTTGATAGAGAGTTATGGTCGATTTGGAAACCTCGAAGAAGCTTTGACACTCCTCAAAGAGATGAAGCTTAATAACATCCGTCCTTCAAGCTATATTTACAGGTCCCTTATCAGAAATTCAATGACGATGAAGAAGGTGGAATTGGCTACGGACCTTCTCAATGAAATGAAATTAAGTAAATCAGAACTTGCTCGTCCAGAGGATTTCAAACGAAGAAAAATGTAACCAATTGAATAGTTTCACAGCAGACTTTGAGATTGATAAGCATGTGAATGTCATGGCTTTAATCTTCAAAGTGAGATCTGCCAGAGTGACTGCATGCATAGGTAATATTTCTACCTATTTATCTACTTCTCTTATGTCTGACTCGAAATACACAAATTGTTGTCATAAGTTGCAATAGAAGTCTTGTGACGAATTTTGGAGATTCATTTTAGGACCAATATACAAAAACGTAAGATGAATATTTGGTTTGTTTAATTGTCTGTTATGTAAGGTGCTGTGTGTAACTAACGTTTGTTGGGAGATATAACTCAAATCGTGGAGCATTTTTAGAATATTTGCAAGAACTTAGAAAAGATGTAATTCAAGAAATTTGCTATGAGGAAGAAAACTATGAACAAAAATCAGGGGCTCACAAAATTTCAAAAAAAGACTTTAACACAATCAAAATTCGACACTGAAGTGAAAATCATCGGTGAAAACAAGCATCTAGGGATTCAATTTGAATAATATGATAAGTTGATTAAAGA

mRNA sequence

TTCCTTTCAACCGTTCAAATAAATTGATTTCTCTTCCTCTTCTTCCTTTGCTTCAGCCGAACTCCGCTTCCCTCACCGTCTTCTCTCTTCACGTCTCACCCGCCGCGTCTCCTAGCCGCCCGTTCCTCCTCGCGTTGCCGCTTATCTGACGCCCAGACGAGCGGAGCCGACGTCTCCTTCGCTGCAGCTGGAGTTCGTCGCGCCGCCGTGTGGTTGTTTCACACCCGTCGTCCGAAGCCTTCGCCGCTGCCACTGCGTTGCCCATCTGCCGCCGCCGGTCCCGTCAACCACTGAAGTTAGGTACAGAGTTTGGGAATGGGTTTGGTAGTAATCTTAGCATTCATCTTTATCGAGTTAGGGCTGATTTCACCATAGGCAAAGGCTGAGCGGAAAAGCAAGATGCAAACCCTGGAATTTTGTAACGAAGAAGAATCGCAAAAAGCAGTGTCGTGGTTTTAGGGTTTTGGGTTTAGAGTGCTTTGGCCTTCTTCCACATTTCAGCTTATGGTTCGAACCACTTCCCCATTTACTTGCATTTTCAATTTCAGTTCTGGCCGTTTATGTCGCTTTACCATCTTGCTATCCATAGGAATTTTCTGCATTACTCGTATGCTAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAACGGAAAATGCCTCAAACTGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAGTGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCGGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGGTGGGTCGACTAGATATATCCGTGATTTACTTCAGGGAAATGGTTGCAATGGGAATTGAACCTGATTTGCTTACTTATACAGCTTTGATAGAGAGTTATGGTCGATTTGGAAACCTCGAAGAAGCTTTGACACTCCTCAAAGAGATGAAGCTTAATAACATCCGTCCTTCAAGCTATATTTACAGGTCCCTTATCAGAAATTCAATGACGATGAAGAAGGTGGAATTGGCTACGGACCTTCTCAATGAAATGAAATTAAGTAAATCAGAACTTGCTCGTCCAGAGGATTTCAAACGAAGAAAAATGTAACCAATTGAATAGTTTCACAGCAGACTTTGAGATTGATAAGCATGTGAATGTCATGGCTTTAATCTTCAAAGTGAGATCTGCCAGAGTGACTGCATGCATAGGTAATATTTCTACCTATTTATCTACTTCTCTTATGTCTGACTCGAAATACACAAATTGTTGTCATAAGTTGCAATAGAAGTCTTGTGACGAATTTTGGAGATTCATTTTAGGACCAATATACAAAAACGTAAGATGAATATTTGGTTTGTTTAATTGTCTGTTATGTAAGGTGCTGTGTGTAACTAACGTTTGTTGGGAGATATAACTCAAATCGTGGAGCATTTTTAGAATATTTGCAAGAACTTAGAAAAGATGTAATTCAAGAAATTTGCTATGAGGAAGAAAACTATGAACAAAAATCAGGGGCTCACAAAATTTCAAAAAAAGACTTTAACACAATCAAAATTCGACACTGAAGTGAAAATCATCGGTGAAAACAAGCATCTAGGGATTCAATTTGAATAATATGATAAGTTGATTAAAGA

Coding sequence (CDS)

ATGTCGCTTTACCATCTTGCTATCCATAGGAATTTTCTGCATTACTCGTATGCTAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAACGGAAAATGCCTCAAACTGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAGTGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCGGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGGTGGGTCGACTAGATATATCCGTGATTTACTTCAGGGAAATGGTTGCAATGGGAATTGAACCTGATTTGCTTACTTATACAGCTTTGATAGAGAGTTATGGTCGATTTGGAAACCTCGAAGAAGCTTTGACACTCCTCAAAGAGATGAAGCTTAATAACATCCGTCCTTCAAGCTATATTTACAGGTCCCTTATCAGAAATTCAATGACGATGAAGAAGGTGGAATTGGCTACGGACCTTCTCAATGAAATGAAATTAAGTAAATCAGAACTTGCTCGTCCAGAGGATTTCAAACGAAGAAAAATGTAA

Protein sequence

MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKRRKM

Homology

[Close]

BLAST of CsGy1G013950 vs. NCBI nr
Match: XP_011654081.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis sativus] >KGN64856.1 hypothetical protein Csa_1G132170 [Cucumis sativus])

HSP 1 Score: 441.0 bits (1133), Expect = 3.8e-120
Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLA 120
           LNQIIAPTENAS CIHEIIDACIDKICRLGHLAAAAHLLKSLC+EKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 224

[Close]

BLAST of CsGy1G013950 vs. NCBI nr
Match: XP_011654092.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X3 [Cucumis sativus])

HSP 1 Score: 441.0 bits (1133), Expect = 3.8e-120
Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLA 120
           LNQIIAPTENAS CIHEIIDACIDKICRLGHLAAAAHLLKSLC+EKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 224

[Close]

BLAST of CsGy1G013950 vs. NCBI nr
Match: XP_011654087.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 2.3e-109
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 19  NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASNCIHEI 78
           NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENAS CIHEI
Sbjct: 2   NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASKCIHEI 61

Query: 79  IDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL 138
           IDACIDKICRLGHLAAAAHLLKSLC+EKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL
Sbjct: 62  IDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL 121

Query: 139 LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKA 198
           LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKA
Sbjct: 122 LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKA 181

Query: 199 FQIFNQMKCLSCTPDLYTYNIILDMV 225
           FQIFNQMKCLSCTPDLYTYNIILDMV
Sbjct: 182 FQIFNQMKCLSCTPDLYTYNIILDMV 207

[Close]

BLAST of CsGy1G013950 vs. NCBI nr
Match: XP_008462492.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis melo])

HSP 1 Score: 377.1 bits (967), Expect = 6.8e-101
Identity = 192/226 (84.96%), Postives = 206/226 (91.15%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKV-FKSSEAYDMVLL 120
           LNQIIAP ENASNC HEI+DACIDKIC LGHLAAAA LLKSLC+EK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LDM+
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDML 226

[Close]

BLAST of CsGy1G013950 vs. NCBI nr
Match: XP_008462480.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis melo])

HSP 1 Score: 375.2 bits (962), Expect = 2.6e-100
Identity = 191/224 (85.27%), Postives = 204/224 (91.07%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKV-FKSSEAYDMVLL 120
           LNQIIAP ENASNC HEI+DACIDKIC LGHLAAAA LLKSLC+EK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILD 223
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LD
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLD 224

[Close]

BLAST of CsGy1G013950 vs. TrEMBL
Match: tr|A0A0A0LXZ6|A0A0A0LXZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132170 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 2.5e-120
Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLA 120
           LNQIIAPTENAS CIHEIIDACIDKICRLGHLAAAAHLLKSLC+EKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 224

[Close]

BLAST of CsGy1G013950 vs. TrEMBL
Match: tr|A0A1S3CH34|A0A1S3CH34_CUCME (pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.5e-101
Identity = 192/226 (84.96%), Postives = 206/226 (91.15%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKV-FKSSEAYDMVLL 120
           LNQIIAP ENASNC HEI+DACIDKIC LGHLAAAA LLKSLC+EK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LDM+
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDML 226

[Close]

BLAST of CsGy1G013950 vs. TrEMBL
Match: tr|A0A1S3CIJ8|A0A1S3CIJ8_CUCME (pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.7e-100
Identity = 191/224 (85.27%), Postives = 204/224 (91.07%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKV-FKSSEAYDMVLL 120
           LNQIIAP ENASNC HEI+DACIDKIC LGHLAAAA LLKSLC+EK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILD 223
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LD
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLD 224

[Close]

BLAST of CsGy1G013950 vs. TrEMBL
Match: tr|A0A2P5C2X1|A0A2P5C2X1_PARAD (Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_188960 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 98/217 (45.16%), Postives = 134/217 (61.75%), Query Frame = 0


Query: 14  HYSYANRIASAPVGNSQIWPLYAIKCL---SHQSSGTKIFPNEVKVGDEDLNQIIAPTE- 73
           H   AN+I S PV     WPL+ +      + +S  TK  PNE +V    LN+I A T  
Sbjct: 44  HKCCANQIISFPVVFFWTWPLFIVASRFIGNSRSFSTKTSPNEEEV---VLNEIFAATAK 103

Query: 74  -NASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLAASERGDTP 133
            NA     EI +A IDK+CR G+L+AAA  LKSL  + VF SS AY+ +L AASE+ D  
Sbjct: 104 GNALRSTSEICNAYIDKLCRSGNLSAAARFLKSLHDKHVFISSNAYEALLAAASEKNDIG 163

Query: 134 LLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQKCIVINRIIF 193
           L+ +VF  A+ S +S    SY+  A+AF KTND ++L   +K+++E+T     V+NR I 
Sbjct: 164 LVSQVFIDAIGSSESWRPTSYLYIAKAFAKTNDYTRLFRFIKDVVELTFPSLKVLNRTIL 223

Query: 194 AFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           AF+E R+ID+A  IF+Q+K L C PDL  YNIILD++
Sbjct: 224 AFAEYRQIDQALLIFDQIKSLKCKPDLIMYNIILDIL 257

[Close]

BLAST of CsGy1G013950 vs. TrEMBL
Match: tr|A0A2I4H819|A0A2I4H819_9ROSI (pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Juglans regia OX=51240 GN=LOC109014315 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 9.8e-32
Identity = 87/212 (41.04%), Postives = 134/212 (63.21%), Query Frame = 0


Query: 17  YANRIASAPVGNSQIWPLYAI---KCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASN 76
           Y N I S+ +G   IWP +A+       +    T+  PNE +V DE ++ I+    NA  
Sbjct: 42  YNNCITSSTLGFPLIWPFFAVINNFIGKYHLLTTQASPNEKEVTDEVISHILTTIINAQR 101

Query: 77  CIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLAASERGDTPLLCEV 136
              ++    ++K+C  G+L+AAA +L+SL  + +F S  AY+++L+AASER D  LL + 
Sbjct: 102 PNGKVC-TVVNKLCESGNLSAAARILQSLRDKHIFPSPIAYNLLLVAASERHDIDLLSQA 161

Query: 137 FKVALLSCKSLSSASYMSFARAFTKTNDS-KLLECVKEIIEITSQKCIVINRIIFAFSER 196
           FK  L+S  +LSS+SY+  A+AFTKT+DS +LL  ++E+  +TS    V+NRII AF+E 
Sbjct: 162 FKDLLVSRGALSSSSYLMVAKAFTKTDDSVQLLRFIEEVSALTSPSVTVLNRIISAFAEC 221

Query: 197 REIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
            ++DKA  I++ +K L C PDL TYN I+D++
Sbjct: 222 GQVDKALLIYDMIKSLRCKPDLVTYNTIMDIL 252

The following BLAST results are available for this feature:

BLAST of CsGy1G013950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654081.1	3.8e-120	99.11	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc...	[more]
XP_011654092.1	3.8e-120	99.11	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X3 [Cuc...	[more]
XP_011654087.1	2.3e-109	99.03	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc...	[more]
XP_008462492.1	6.8e-101	84.96	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc...	[more]
XP_008462480.1	2.6e-100	85.27	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc...	[more]

BLAST of CsGy1G013950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G013950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G013950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXZ6\|A0A0A0LXZ6_CUCSA	2.5e-120	99.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132170 PE=4 SV=1	[more]
tr\|A0A1S3CH34\|A0A1S3CH34_CUCME	4.5e-101	84.96	pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Cucumis melo...	[more]
tr\|A0A1S3CIJ8\|A0A1S3CIJ8_CUCME	1.7e-100	85.27	pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A2P5C2X1\|A0A2P5C2X1_PARAD	1.6e-34	45.16	Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_188960 P...	[more]
tr\|A0A2I4H819\|A0A2I4H819_9ROSI	9.8e-32	41.04	pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Juglans regi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G013950.1	CsGy1G013950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 272..326 e-value: 3.9E-11 score: 42.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 216..260 e-value: 5.7E-11 score: 42.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 286..318 e-value: 2.6E-8 score: 31.5 coord: 215..249 e-value: 3.7E-8 score: 31.0 coord: 182..213 e-value: 4.8E-5 score: 21.3 coord: 250..283 e-value: 6.7E-6 score: 24.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 183..209 e-value: 0.1 score: 12.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 283..317 score: 12.584
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 248..282 score: 11.772
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 178..212 score: 8.265
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 318..352 score: 6.796
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 213..247 score: 12.332
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 178..361 e-value: 1.1E-44 score: 155.0
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 96..338
None	No IPR available	PANTHER	PTHR24015:SF488	SUBFAMILY NOT NAMED	coord: 96..338

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G013950	Csa1G132170	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G013950	ClCG01G013900	Watermelon (Charleston Gray)	cgybwcgB014
CsGy1G013950	CSPI01G13950	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G013950	Lsi03G000590	Bottle gourd (USVL1VR-Ls)	cgyblsiB041
CsGy1G013950	CsaV3_1G014130	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G013950	Bhi08G000123	Wax gourd	cgybwgoB046

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G013950	Cucurbita maxima (Rimu)	cgybcmaB058
CsGy1G013950	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G013950	Cucurbita moschata (Rifu)	cgybcmoB054
CsGy1G013950	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G013950	Cucurbita pepo (Zucchini)	cgybcpeB082
CsGy1G013950	Cucurbita pepo (Zucchini)	cgybcpeB142
CsGy1G013950	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G013950	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G013950	Watermelon (97103) v1	cgybwmB054
CsGy1G013950	Silver-seed gourd	carcgybB0180
CsGy1G013950	Watermelon (97103) v2	cgybwmbB003