Bhi08G000123 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000123
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Pentatricopeptide repeat-containing protein
Location	chr8 : 5432029 .. 5435874 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTCATCGACTTAGGGCTGGAAGTCAATACGTTCTCCTCTGTGAGAGAAAAATAACACGCAGAGGGTTTTGGGGTATTTGAGCCTTCTTGTTCATACCAGCTGTATGGTTCGAACCACTTTCCCATTTACTTGCATTTTCGATTTCAATTCTGGCGGGTCATGTCAGTTTACGAACTTCCTGTCCACTAGGAATCTTCTGCATTGCTCCTACGCTGTAAGTTGAACCTCTAAATTTCTTTTCTTTTTGTTTGTTTGTGTAATATTGCACCTTGCCATTTGATTTTTATGCTATGAACTGTGTTTTTATCGATTAAATTCGACCCAGAAATTCATTGATTTCTCTGGGCGTGTTTGGGAGCCATTTTAAATGCTTAAAATCACTCTAAAAATGCTTTTAATCATTCAAATTCAATTTTAATAGTATGAAAAATGTATTAAAATTAATCATTCAATCCAAACAGGCCCTCAATTGATTTTTTGAGTGACGAAGGGTGTGTTTCTGAGTAATTTTAAAGATGATAAAAGTGATTTTAATTGTTCCAAAATCATTCCCAAACATGCACTCCGTTTTGAAGTTGATGGAGGTATAAACATGTTCAAATTAAAGTTTATGTCAATAAAATTTTTGCTTCTCGCCTGTTGATGATTCAATCAACACTGCTGAGGATTATCCGTAGATGTTGTTGATAGATGATAGGTGGAATCCAGATCATTTCTCAATGTCTTTTCTAGGTCTCCGTTGTGAAGGCTTTGCTATTGATCATGTTTTTATAGAGCATATAACCAATGTTTGTTCACCAACTTAATTTACTAAATTTTTGTTCCTTCACGTCAACTATTGGAAACCCAGATTTTGGAAGCTCAATAGTTGTTTAATAACTCATCAATGCCATTTATCTTTCTTAATTCAACTTAGGTTGAGAACTACATCTTATCCACCTTCATATCTAACCTGCATATATCTTTTAGATGATTACACATGACTTATGCCTTGCGAATTAAATATTTAATTGTCTCTACATGTCTAATACAGAATAGCATTGCATCTGTCCCAGTTGGTAACTCTCAATTTTGGCCGCTTTATGCCATCAGACTCCTTAGCCATCAGTCATCTAGTACAAATATCTGTCCTGATGAAGTGAAAGTGGGGGATGAAGTCTTGAATCAGATTATTGCTCCAAGGGAAAATGCCTCAAGGTGTAGCCATGAGACCTTTGATGCTTGCATTGATAAGATGTGTCGAATTGGACATCTTGCAGCTGCTGCTCAATTACTTAAATCATTGTGCGATGGGAAAATACCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGCGGAGACACCACCCTTTTATTTCAAGTTTTTAAAGATTCCCTGGTTTCCTGTAAATCATTGAGTTCGACCTCTTACAAGAGTTTTGCCAACGCCTTTACCAGGACAAATGATAGTAACAAGCTACTGGAATATGTCAAAGAAATAATTGAGATGACCTTTCCAAACTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCAAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATGCAGACCAGATTTGTATACGTACAACATCATTTTGGATATGCTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATTTATTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATCGTGTCCTATAATACATTGATAAATAGTTTTAGGAAGGTGGGTAGACTAGATATGTGCTTGGTGTACTTCAAGGAAATGGTTGCAGTGAGAATTGAACCCGATTTGCTTACTTATACAGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACATCGAGGAAGCTTGGACACTCCTCAGGGAGATGAAGCTTAAGAATATCTGTCCTTCAAGCTATATCTACAAGTCCCTTATCGGAAATTCAATGAAGATGGGGAAGGTGGAATTGGCTATGAACCTTCTCAAGGAAATGAAATTAAGTGATTCAAAACTTGCTGGTCCAAAGGATTTCAAACGAAGAAAAAGTTAACCAATTACAAGGTTTCTTAGTGACTTTGAGGCTGATAAACCTGTGAATGGCATGGCTTTAGTCTTCAAACTGAGATCTGCCAGAGTGACTCCATCTACAGGTAATATTTGTACTCATTTATCTACCTCTCTTACATCTAACATGAAATACAAAAGTTATAATTATCTTCAAACGGAGATTCATTCTAGGACTAATATATGAAAACCTAAGATGAATATTTAGTTTGTTTGATTGTCTGTCATGTGGTTTAAGTGTGTTAACTGTCATTTCAAGTAAAAGGATAGGCAGAAAAATTTCATGTTTCCACAATGTTTATATCTCTCTTTATGACAGATTTACAGAGAATTATAGTGATTCAGGTGAATTTTAGTTTACAAAAATTAATGATAATAATATTTAGATTGAAGAGCCAGAGAAAAATCTGTAACTACTTGTATAGGATACCTTGGGAATCATGAGTGATTTTTTTGTTTGTTTTGTATCATAGGAGACTTGAACCAAGGTTTTGTTGGGGTTGGGTGAATCATCATGTCAAACCAGTCAGTTTGGCTTATATTAGTCTATTAGATTCTCCGAGTGACTATTATATAAAACATGGGTGGCCTCTTTACCCCAGATTTAGATTTTCCATGCTTGTGTATATATGGTTAATGGTGGAATATACCATTTAAAGAAACTACTATGTTGAAATGTTACTTTTTTTAACAATATAATTCCATTACCAGAATTTTACTTCGTTTTGTTTTGCTGCCAAAAAAATTTGTATGGTACAATCATTAGTTGAATCTTACTATTTTTAGTGAGGGACGAAAAAAATATGACAATGATCATTTGTTTTACTCTAAATGCATATGGTAGTCTGTACCAGAGAGATAAAGTTTGGAATTTTAAATTTATAACTATAAATGTCATAGCTTTGCTTGAGTCACTCAACAATGGATACTGTGATGCTAAACAGCATATTGGTACTAGTACTAACAGTAAAATCTGGTCGATCTTTGGCCACTGTCCAGTTTGGTCAGATCGGAAGGTCCCCGAACTGTGATGCCGAAGAGAAGATAGCTCAAACAGAGGACACTCTCTTGGAAGTTATGTACTTAAAATGTTGGTAATATATGATGATCGCTAATTGGGAGCAGATATAGGGCTATTCGGACGAGTTGAAATTTAAGGACCGACGTGATGAAGATGAGGAATTGATCGATTATTTGGAAGAATCGCTAGGTAGCTTTGAGAGAGCTGTAAAGAAAATGGGAATGCAACGGTTTCCTTGAACAATGGATAATCTTGATTCTGTTTCCTTTGCAATAGAAAATAGCAAAGGAGAGCCAACTCATCAGATTCAATTTCTGTTTTCTTGAAGCCAAACCTTTCTTGAAGGAAATTCCATGTGAATCTTTTGATGGTTTCTACTTCAGTTCTGCCATTTGAATTGATTTCCAACTTTTACATCCAAGAATTTCCTCTGCAGTCTTTCTTTTCACTTATATATTCTTTGGCTACAATTGGAATATAGAATTTTCTTTCGACTGTTAAAAGGCATATTTGTAACCGTGGGAACGGTCGCTTTCAAGCTGGAAATGTCGACATTGATAGATATTTTTTTGTAAATCAGTTTGCATTCTAAACATGCATAACACAATCAGTTGGAAACTGTGCTTCCAATATTTCCAAAATGTAAGCCTTGAAAATTATTTACAAACATCAAATATAAATCCATTGAGAATTGTATACACAAAATATTAATAGATTTCAATAGAAAATAT

mRNA sequence

ATCTTCATCGACTTAGGGCTGGAAGTCAATACGTTCTCCTCTGTGAGAGAAAAATAACACGCAGAGGGTTTTGGGGTATTTGAGCCTTCTTGTTCATACCAGCTGTATGGTTCGAACCACTTTCCCATTTACTTGCATTTTCGATTTCAATTCTGGCGGGTCATGTCAGTTTACGAACTTCCTGTCCACTAGGAATCTTCTGCATTGCTCCTACGCTAATAGCATTGCATCTGTCCCAGTTGGTAACTCTCAATTTTGGCCGCTTTATGCCATCAGACTCCTTAGCCATCAGTCATCTAGTACAAATATCTGTCCTGATGAAGTGAAAGTGGGGGATGAAGTCTTGAATCAGATTATTGCTCCAAGGGAAAATGCCTCAAGGTGTAGCCATGAGACCTTTGATGCTTGCATTGATAAGATGTGTCGAATTGGACATCTTGCAGCTGCTGCTCAATTACTTAAATCATTGTGCGATGGGAAAATACCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGCGGAGACACCACCCTTTTATTTCAAGTTTTTAAAGATTCCCTGGTTTCCTGTAAATCATTGAGTTCGACCTCTTACAAGAGTTTTGCCAACGCCTTTACCAGGACAAATGATAGTAACAAGCTACTGGAATATGTCAAAGAAATAATTGAGATGACCTTTCCAAACTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCAAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATGCAGACCAGATTTGTATACGTACAACATCATTTTGGATATGCTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATTTATTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATCGTGTCCTATAATACATTGATAAATAGTTTTAGGAAGGTGGGTAGACTAGATATGTGCTTGGTGTACTTCAAGGAAATGGTTGCAGTGAGAATTGAACCCGATTTGCTTACTTATACAGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACATCGAGGAAGCTTGGACACTCCTCAGGGAGATGAAGCTTAAGAATATCTGTCCTTCAAGCTATATCTACAAGTCCCTTATCGGAAATTCAATGAAGATGGGGAAGGTGGAATTGGCTATGAACCTTCTCAAGGAAATGAAATTAAGTGATTCAAAACTTGCTGGTCCAAAGGATTTCAAACGAAGAAAAAGTTAACCAATTACAAGGTTTCTTAGTGACTTTGAGGCTGATAAACCTGTGAATGGCATGGCTTTAGTCTTCAAACTGAGATCTGCCAGAGTGACTCCATCTACAGTTTGGTCAGATCGGAAGGTCCCCGAACTGTGATGCCGAAGAGAAGATAGCTCAAACAGAGGACACTCTCTTGGAAGTTATGTACTTAAAATGTTGGTAATATATGATGATCGCTAATTGGGAGCAGATATAGGGCTATTCGGACGAGTTGAAATTTAAGGACCGACGTGATGAAGATGAGGAATTGATCGATTATTTGGAAGAATCGCTAGGTAGCTTTGAGAGAGCTGTAAAGAAAATGGGAATGCAACGGTTTCCTTGAACAATGGATAATCTTGATTCTGTTTCCTTTGCAATAGAAAATAGCAAAGGAGAGCCAACTCATCAGATTCAATTTCTGTTTTCTTGAAGCCAAACCTTTCTTGAAGGAAATTCCATGTGAATCTTTTGATGGTTTCTACTTCAGTTCTGCCATTTGAATTGATTTCCAACTTTTACATCCAAGAATTTCCTCTGCAGTCTTTCTTTTCACTTATATATTCTTTGGCTACAATTGGAATATAGAATTTTCTTTCGACTGTTAAAAGGCATATTTGTAACCGTGGGAACGGTCGCTTTCAAGCTGGAAATGTCGACATTGATAGATATTTTTTTGTAAATCAGTTTGCATTCTAAACATGCATAACACAATCAGTTGGAAACTGTGCTTCCAATATTTCCAAAATGTAAGCCTTGAAAATTATTTACAAACATCAAATATAAATCCATTGAGAATTGTATACACAAAATATTAATAGATTTCAATAGAAAATAT

Coding sequence (CDS)

ATGGTTCGAACCACTTTCCCATTTACTTGCATTTTCGATTTCAATTCTGGCGGGTCATGTCAGTTTACGAACTTCCTGTCCACTAGGAATCTTCTGCATTGCTCCTACGCTAATAGCATTGCATCTGTCCCAGTTGGTAACTCTCAATTTTGGCCGCTTTATGCCATCAGACTCCTTAGCCATCAGTCATCTAGTACAAATATCTGTCCTGATGAAGTGAAAGTGGGGGATGAAGTCTTGAATCAGATTATTGCTCCAAGGGAAAATGCCTCAAGGTGTAGCCATGAGACCTTTGATGCTTGCATTGATAAGATGTGTCGAATTGGACATCTTGCAGCTGCTGCTCAATTACTTAAATCATTGTGCGATGGGAAAATACCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGCGGAGACACCACCCTTTTATTTCAAGTTTTTAAAGATTCCCTGGTTTCCTGTAAATCATTGAGTTCGACCTCTTACAAGAGTTTTGCCAACGCCTTTACCAGGACAAATGATAGTAACAAGCTACTGGAATATGTCAAAGAAATAATTGAGATGACCTTTCCAAACTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCAAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATGCAGACCAGATTTGTATACGTACAACATCATTTTGGATATGCTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATTTATTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATCGTGTCCTATAATACATTGATAAATAGTTTTAGGAAGGTGGGTAGACTAGATATGTGCTTGGTGTACTTCAAGGAAATGGTTGCAGTGAGAATTGAACCCGATTTGCTTACTTATACAGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACATCGAGGAAGCTTGGACACTCCTCAGGGAGATGAAGCTTAAGAATATCTGTCCTTCAAGCTATATCTACAAGTCCCTTATCGGAAATTCAATGAAGATGGGGAAGGTGGAATTGGCTATGAACCTTCTCAAGGAAATGAAATTAAGTGATTCAAAACTTGCTGGTCCAAAGGATTTCAAACGAAGAAAAAGTTAA

Protein sequence

MVRTTFPFTCIFDFNSGGSCQFTNFLSTRNLLHCSYANSIASVPVGNSQFWPLYAIRLLSHQSSSTNICPDEVKVGDEVLNQIIAPRENASRCSHETFDACIDKMCRIGHLAAAAQLLKSLCDGKIPLSSSKAYDMVLLAASESGDTTLLFQVFKDSLVSCKSLSSTSYKSFANAFTRTNDSNKLLEYVKEIIEMTFPNCIVINRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRVDEILHLFVSMKEDGIAPDIVSYNTLINSFRKVGRLDMCLVYFKEMVAVRIEPDLLTYTALIESFGRSGNIEEAWTLLREMKLKNICPSSYIYKSLIGNSMKMGKVELAMNLLKEMKLSDSKLAGPKDFKRRKS

Homology

[Close]

BLAST of Bhi08G000123 vs. TrEMBL
Match: tr|A0A1S3CIJ8|A0A1S3CIJ8_CUCME (pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.3e-86
Identity = 167/205 (81.46%), Postives = 179/205 (87.32%), Query Frame = 0


Query: 29  RNLLHCSYANSIASVPVGNSQFWPLYAIRLLSHQSSSTNICPDEVKVGDEVLNQIIAPRE 88
           RNLLH SYAN IAS+PVGNSQ WPLYAI+  SHQSSSTNI PDEVKVGDEVLNQIIAPRE
Sbjct: 10  RNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQIIAPRE 69

Query: 89  NASRCSHETFDACIDKMCRIGHLAAAAQLLKSLCDGKIPLSSSKAYDMVLLAASESGDTT 148
           NAS CSHE  DACIDK+C +GHLAAAAQLLKSLC+ KI L+SSKAYDMVLLAASE GDT 
Sbjct: 70  NASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAASERGDTP 129

Query: 149 LLFQVFKDSLVSCKSLSSTSYKSFANAFTRTNDSNKLLEYVKEIIEMTFPNCIVINRIIF 208
           LL QVFK ++VSCKSLSS SY SFA AFT+TNDS+KLLE VKEI+E+T  NC VINRIIF
Sbjct: 130 LLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRP 234
           AFSKCREIDKA QIFNQMK LSC P
Sbjct: 190 AFSKCREIDKAFQIFNQMKCLSCTP 214

[Close]

BLAST of Bhi08G000123 vs. TrEMBL
Match: tr|A0A1S3CH34|A0A1S3CH34_CUCME (pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.3e-86
Identity = 167/205 (81.46%), Postives = 179/205 (87.32%), Query Frame = 0


Query: 29  RNLLHCSYANSIASVPVGNSQFWPLYAIRLLSHQSSSTNICPDEVKVGDEVLNQIIAPRE 88
           RNLLH SYAN IAS+PVGNSQ WPLYAI+  SHQSSSTNI PDEVKVGDEVLNQIIAPRE
Sbjct: 10  RNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQIIAPRE 69

Query: 89  NASRCSHETFDACIDKMCRIGHLAAAAQLLKSLCDGKIPLSSSKAYDMVLLAASESGDTT 148
           NAS CSHE  DACIDK+C +GHLAAAAQLLKSLC+ KI L+SSKAYDMVLLAASE GDT 
Sbjct: 70  NASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAASERGDTP 129

Query: 149 LLFQVFKDSLVSCKSLSSTSYKSFANAFTRTNDSNKLLEYVKEIIEMTFPNCIVINRIIF 208
           LL QVFK ++VSCKSLSS SY SFA AFT+TNDS+KLLE VKEI+E+T  NC VINRIIF
Sbjct: 130 LLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRP 234
           AFSKCREIDKA QIFNQMK LSC P
Sbjct: 190 AFSKCREIDKAFQIFNQMKCLSCTP 214

[Close]

BLAST of Bhi08G000123 vs. TrEMBL
Match: tr|A0A0A0LXZ6|A0A0A0LXZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132170 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.4e-76
Identity = 156/205 (76.10%), Postives = 170/205 (82.93%), Query Frame = 0


Query: 29  RNLLHCSYANSIASVPVGNSQFWPLYAIRLLSHQSSSTNICPDEVKVGDEVLNQIIAPRE 88
           RN LH SYAN IAS PVGNSQ WPLYAI+ LSHQSS T I P+EVKVGDE LNQIIAP E
Sbjct: 10  RNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTE 69

Query: 89  NASRCSHETFDACIDKMCRIGHLAAAAQLLKSLCDGKIPLSSSKAYDMVLLAASESGDTT 148
           NAS+C HE  DACIDK+CR+GHLAAAA LLKSLC+ K+   SS+AYDMVLLAASE GDT 
Sbjct: 70  NASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKV-FKSSEAYDMVLLAASERGDTP 129

Query: 149 LLFQVFKDSLVSCKSLSSTSYKSFANAFTRTNDSNKLLEYVKEIIEMTFPNCIVINRIIF 208
           LL +VFK +L+SCKSLSS SY SFA AFT+TNDS KLLE VKEIIE+T   CIVINRIIF
Sbjct: 130 LLCEVFKVALLSCKSLSSASYMSFARAFTKTNDS-KLLECVKEIIEITSQKCIVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRP 234
           AFS+ REIDKA QIFNQMK LSC P
Sbjct: 190 AFSERREIDKAFQIFNQMKCLSCTP 212

[Close]

BLAST of Bhi08G000123 vs. TrEMBL
Match: tr|A0A2P4JMC8|A0A2P4JMC8_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_76968 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 8.5e-34
Identity = 101/217 (46.54%), Postives = 134/217 (61.75%), Query Frame = 0


Query: 19  SCQFTNFLSTRNLLHCSYANSIASVPVGNSQFWPLYAIRLLSH-----QSSSTNICPDEV 78
           S     F   ++ LH  Y N IAS+ VG    +PL    ++ +     Q  +T   P++ 
Sbjct: 21  SLPIPQFSIIQSRLHI-YYNCIASITVG----FPLPFFTIIRNFIGKCQFPATQASPNKE 80

Query: 79  KVGDEVLNQIIAPRENASRCSHETFDACIDKMCRIGHLAAAAQLLKSLCDGKIPLSSSKA 138
           +V DEVLNQI+   ENA R + +   A  DK CR G+L+AAA+LL+SL    I L S KA
Sbjct: 81  EVTDEVLNQILTSVENAPRPNTKICTAYADKFCRAGNLSAAARLLQSLHHKHIFL-SPKA 140

Query: 139 YDMVLLAASESGDTTLLFQVFKDSLVSCKSLSSTSYKSFANAFTRTNDSNKLLEYVKEII 198
           Y ++L AASE  D  LL QVFKD L+S   LSST Y   A AFT+TND  +LL +VK++ 
Sbjct: 141 YKILLRAASERHDIDLLSQVFKDLLISNGVLSSTCYADVAKAFTKTNDGIQLLRFVKKVS 200

Query: 199 EMTFPNCIVINRIIFAFSKCREIDKALQIFNQMKLLS 231
            +T P+  V+NRIIFAF+KC +IDKAL I++Q K LS
Sbjct: 201 ALTSPSATVVNRIIFAFAKCGQIDKALLIYDQFKSLS 231

[Close]

BLAST of Bhi08G000123 vs. TrEMBL
Match: tr|E0CU43|E0CU43_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g00220 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.2e-33
Identity = 102/242 (42.15%), Postives = 151/242 (62.40%), Query Frame = 0


Query: 1   MVRTTFPFTCIFDFNSGGSCQFTNFLSTRNLLHCS----YANSIASVPVGNSQFWPLYAI 60
           M+  + PFT IF      S  F +F S    +  +    Y+N I+++P   S   P +AI
Sbjct: 1   MIALSRPFTKIFP-----SIFFRSFHSNLGPIAATRRHRYSNFISAIPDDVSWILPFFAI 60

Query: 61  ---RLLSHQSSSTNICPDEVKVGDEVLNQIIAPRENASRCSHETF-DACIDKMCRIGHLA 120
               + S+QS +T   PDE  V DE LN+I++  E + + S E      IDK+ + G+ +
Sbjct: 61  LSKSIGSYQSLATEASPDEEVVPDEFLNEILSDIERSPKFSSEKLCTTYIDKLLKAGNPS 120

Query: 121 AAAQLLKSLCDGKIPLSSSKAYDMVLLAASESGDTTLLFQVFKDSLVSCKSLSSTSYKSF 180
           AAA+ ++SL D  I LS + AY+++L+AASE+     L Q+FKD LVS K LSSTSY + 
Sbjct: 121 AAARFMQSLHDKHIFLSPN-AYNLLLVAASEANAIDFLSQIFKDLLVSNKPLSSTSYFNV 180

Query: 181 ANAFTRTNDSNKLLEYVKEIIEMTFP-NCIVINRIIFAFSKCREIDKALQIFNQMKLLSC 234
           A  FT+T+DS  LL++V+E+ E+TFP N  ++NRII AF++CR+I+K+L IF+ MK L C
Sbjct: 181 AKVFTKTDDS-VLLKFVREVSELTFPRNATILNRIIHAFAECRQIEKSLIIFDHMKSLKC 235

[Close]

BLAST of Bhi08G000123 vs. NCBI nr
Match: XP_008462480.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 5.0e-86
Identity = 167/205 (81.46%), Postives = 179/205 (87.32%), Query Frame = 0


Query: 29  RNLLHCSYANSIASVPVGNSQFWPLYAIRLLSHQSSSTNICPDEVKVGDEVLNQIIAPRE 88
           RNLLH SYAN IAS+PVGNSQ WPLYAI+  SHQSSSTNI PDEVKVGDEVLNQIIAPRE
Sbjct: 10  RNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQIIAPRE 69

Query: 89  NASRCSHETFDACIDKMCRIGHLAAAAQLLKSLCDGKIPLSSSKAYDMVLLAASESGDTT 148
           NAS CSHE  DACIDK+C +GHLAAAAQLLKSLC+ KI L+SSKAYDMVLLAASE GDT 
Sbjct: 70  NASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAASERGDTP 129

Query: 149 LLFQVFKDSLVSCKSLSSTSYKSFANAFTRTNDSNKLLEYVKEIIEMTFPNCIVINRIIF 208
           LL QVFK ++VSCKSLSS SY SFA AFT+TNDS+KLLE VKEI+E+T  NC VINRIIF
Sbjct: 130 LLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRP 234
           AFSKCREIDKA QIFNQMK LSC P
Sbjct: 190 AFSKCREIDKAFQIFNQMKCLSCTP 214

[Close]

BLAST of Bhi08G000123 vs. NCBI nr
Match: XP_008462492.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 5.0e-86
Identity = 167/205 (81.46%), Postives = 179/205 (87.32%), Query Frame = 0


Query: 29  RNLLHCSYANSIASVPVGNSQFWPLYAIRLLSHQSSSTNICPDEVKVGDEVLNQIIAPRE 88
           RNLLH SYAN IAS+PVGNSQ WPLYAI+  SHQSSSTNI PDEVKVGDEVLNQIIAPRE
Sbjct: 10  RNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQIIAPRE 69

Query: 89  NASRCSHETFDACIDKMCRIGHLAAAAQLLKSLCDGKIPLSSSKAYDMVLLAASESGDTT 148
           NAS CSHE  DACIDK+C +GHLAAAAQLLKSLC+ KI L+SSKAYDMVLLAASE GDT 
Sbjct: 70  NASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAASERGDTP 129

Query: 149 LLFQVFKDSLVSCKSLSSTSYKSFANAFTRTNDSNKLLEYVKEIIEMTFPNCIVINRIIF 208
           LL QVFK ++VSCKSLSS SY SFA AFT+TNDS+KLLE VKEI+E+T  NC VINRIIF
Sbjct: 130 LLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRP 234
           AFSKCREIDKA QIFNQMK LSC P
Sbjct: 190 AFSKCREIDKAFQIFNQMKCLSCTP 214

[Close]

BLAST of Bhi08G000123 vs. NCBI nr
Match: XP_022970322.1 (pentatricopeptide repeat-containing protein At1g11900 [Cucurbita maxima])

HSP 1 Score: 320.1 bits (819), Expect = 1.0e-83
Identity = 168/209 (80.38%), Postives = 178/209 (85.17%), Query Frame = 0


Query: 24  NFLSTRNLLHCSYANSIASVPVGNSQFWPLYAIRLLSHQSSSTNICPDEVKVGDEVLNQI 83
           + LS RN+LH SY NSI S+PVGN Q W LYAIR   HQSS+ NI PDE KV DEVLNQI
Sbjct: 8   SLLSARNVLHYSYTNSITSIPVGNPQNWLLYAIRRFGHQSSTNNISPDEEKVKDEVLNQI 67

Query: 84  IAPRENASRCSHETFDACIDKMCRIGHLAAAAQLLKSLCDGKIPLSSSKAYDMVLLAASE 143
            A RENASRCSHETFD CIDKMCR G+L AAAQLLKSLCD KI LSSSKAYDMVLLAASE
Sbjct: 68  TATRENASRCSHETFDVCIDKMCRSGNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASE 127

Query: 144 SGDTTLLFQVFKDSLVSCKSLSSTSYKSFANAFTRTNDSNKLLEYVKEIIEMTFPNCIVI 203
            GDTTLL QVFKDSLVS K LSSTSY +FA AF RT+DS+KLLEYVKEIIEMTFPN +VI
Sbjct: 128 RGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVI 187

Query: 204 NRIIFAFSKCREIDKALQIFNQMKLLSCR 233
           NRIIFAFS+CREIDKALQIFNQMKLLS R
Sbjct: 188 NRIIFAFSECREIDKALQIFNQMKLLSYR 216

[Close]

BLAST of Bhi08G000123 vs. NCBI nr
Match: XP_022147838.1 (pentatricopeptide repeat-containing protein At1g11900-like isoform X1 [Momordica charantia])

HSP 1 Score: 314.3 bits (804), Expect = 5.7e-82
Identity = 166/233 (71.24%), Postives = 186/233 (79.83%), Query Frame = 0


Query: 2   VRTTFPFTCIFDFNSGGSCQFTNFLSTRNLLHCSYANSIASVPVGNSQFWPLYAI--RLL 61
           VRT   F+ I DF+SGGSC+F N  STR +LH  Y N IAS PVG+ Q W  +A   +  
Sbjct: 18  VRTASAFSYISDFSSGGSCRFRNLPSTRKVLHYPYTNCIASFPVGDPQIWLFFANMGKRF 77

Query: 62  SHQSSSTNICPDEVKVGDEVLNQIIAPRENASRCSHETFDACIDKMCRIGHLAAAAQLLK 121
           SHQS  T+  PDE KV DEVLNQI+A R+NASR SHETFDACI KMCR G+LAAAAQLLK
Sbjct: 78  SHQSYPTDTSPDEEKVIDEVLNQIVATRDNASRSSHETFDACIYKMCRSGNLAAAAQLLK 137

Query: 122 SLCDGKIPLSSSKAYDMVLLAASESGDTTLLFQVFKDSLVSCKSLSSTSYKSFANAFTRT 181
           SLCDGKI LS+SKAYDMVLLAASE GDT+L  QVFKD LVSCKSLSS +Y + A AF  T
Sbjct: 138 SLCDGKISLSASKAYDMVLLAASERGDTSLFCQVFKDCLVSCKSLSSATYMNLAKAFIST 197

Query: 182 NDSNKLLEYVKEIIEMTFPNCIVINRIIFAFSKCREIDKALQIFNQMKLLSCR 233
           ND  KLLEYVKE+IEMTFPN IVIN+IIFAFSKCREI+KAL+IFNQMKLLSC+
Sbjct: 198 NDVGKLLEYVKEVIEMTFPNLIVINKIIFAFSKCREIEKALRIFNQMKLLSCK 250

[Close]

BLAST of Bhi08G000123 vs. NCBI nr
Match: XP_022964991.1 (pentatricopeptide repeat-containing protein At1g11900-like [Cucurbita moschata])

HSP 1 Score: 312.4 bits (799), Expect = 2.2e-81
Identity = 166/207 (80.19%), Postives = 174/207 (84.06%), Query Frame = 0


Query: 26  LSTRNLLHCSYANSIASVPVGNSQFWPLYAIRLLSHQSSSTNICPDEVKVGDEVLNQIIA 85
           LS RN+LH SY NSI SVPVGN Q W LYAIR   HQ S+TNI PDE KV DEVLNQI A
Sbjct: 10  LSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVEDEVLNQITA 69

Query: 86  PRENASRCSHETFDACIDKMCRIGHLAAAAQLLKSLCDGKIPLSSSKAYDMVLLAASESG 145
            RENAS CSHETFD CIDKMCR  +L AAAQLLKS CD KI LSSSKAYDMVLLAASE G
Sbjct: 70  TRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAASERG 129

Query: 146 DTTLLFQVFKDSLVSCKSLSSTSYKSFANAFTRTNDSNKLLEYVKEIIEMTFPNCIVINR 205
           DTTLL QVFKDSLVS K LSSTSY +FA AF RT+DS+KLLEYVKEIIEMTFPN +VINR
Sbjct: 130 DTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINR 189

Query: 206 IIFAFSKCREIDKALQIFNQMKLLSCR 233
           IIFAFS+CREIDKALQIFNQMKLLS R
Sbjct: 190 IIFAFSECREIDKALQIFNQMKLLSYR 216

The following BLAST results are available for this feature:

BLAST of Bhi08G000123 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000123 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08G000123 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIJ8\|A0A1S3CIJ8_CUCME	3.3e-86	81.46	pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A1S3CH34\|A0A1S3CH34_CUCME	3.3e-86	81.46	pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Cucumis melo...	[more]
tr\|A0A0A0LXZ6\|A0A0A0LXZ6_CUCSA	2.4e-76	76.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132170 PE=4 SV=1	[more]
tr\|A0A2P4JMC8\|A0A2P4JMC8_QUESU	8.5e-34	46.54	Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_7...	[more]
tr\|E0CU43\|E0CU43_VITVI	4.2e-33	42.15	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g00220 PE=4 SV=...	[more]

BLAST of Bhi08G000123 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462480.1	5.0e-86	81.46	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc...	[more]
XP_008462492.1	5.0e-86	81.46	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc...	[more]
XP_022970322.1	1.0e-83	80.38	pentatricopeptide repeat-containing protein At1g11900 [Cucurbita maxima]	[more]
XP_022147838.1	5.7e-82	71.24	pentatricopeptide repeat-containing protein At1g11900-like isoform X1 [Momordica...	[more]
XP_022964991.1	2.2e-81	80.19	pentatricopeptide repeat-containing protein At1g11900-like [Cucurbita moschata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000123	Bhi08M000123	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 53..196 e-value: 7.1E-6 score: 27.6 coord: 197..377 e-value: 3.9E-48 score: 166.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 303..347 e-value: 2.2E-9 score: 37.2 coord: 233..281 e-value: 4.0E-13 score: 49.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 271..304 e-value: 8.9E-8 score: 29.9 coord: 307..339 e-value: 3.4E-9 score: 34.3 coord: 203..234 e-value: 1.9E-5 score: 22.6 coord: 236..270 e-value: 1.4E-9 score: 35.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 204..229 e-value: 0.0066 score: 16.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 339..373 score: 8.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 304..338 score: 12.529
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 199..233 score: 9.602
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 234..268 score: 12.858
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 269..303 score: 11.071
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 94..128 score: 6.686
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 165..195 score: 5.568
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 94..363
None	No IPR available	PANTHER	PTHR24015:SF488	SUBFAMILY NOT NAMED	coord: 94..363
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 169..365

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi08G000123	Csa1G132170	Cucumber (Chinese Long) v2	cuwgoB049
Bhi08G000123	ClCG01G013900	Watermelon (Charleston Gray)	wcgwgoB243
Bhi08G000123	CSPI01G13950	Wild cucumber (PI 183967)	cpiwgoB049
Bhi08G000123	CmaCh13G002640	Cucurbita maxima (Rimu)	cmawgoB0267
Bhi08G000123	CmoCh13G002710	Cucurbita moschata (Rifu)	cmowgoB0259
Bhi08G000123	Lsi03G000590	Bottle gourd (USVL1VR-Ls)	lsiwgoB337
Bhi08G000123	Cp4.1LG20g07430	Cucurbita pepo (Zucchini)	cpewgoB0636
Bhi08G000123	CsGy1G013950	Cucumber (Gy14) v2	cgybwgoB046
Bhi08G000123	Cla001852	Watermelon (97103) v1	wgowmB499
Bhi08G000123	Cla97C01G012870	Watermelon (97103) v2	wgowmbB461

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000123	Cucumber (Gy14) v1	cgywgoB422
Bhi08G000123	Cucurbita maxima (Rimu)	cmawgoB0220
Bhi08G000123	Cucurbita moschata (Rifu)	cmowgoB0214
Bhi08G000123	Cucurbita pepo (Zucchini)	cpewgoB1056
Bhi08G000123	Cucumber (Chinese Long) v3	cucwgoB051
Bhi08G000123	Melon (DHL92) v3.6.1	medwgoB176
Bhi08G000123	Melon (DHL92) v3.5.1	mewgoB174
Bhi08G000123	Silver-seed gourd	carwgoB0216