CmoCh13G002710 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G002710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cmo_Chr13 : 2211580 .. 2216522 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTTTTTGGAAAATTTGTATGGCCATGAGAGCTTATGCTTAGAGTGGACAATAACTTACCAGTGTGATTCCTAACATGGTATCAAAGTCACGACTTTCACTTAGTCCTGTCAATAGAATTCTCGAAGTATTGAACAATGTGTAATCAAAAGTGACTCAAGTTTCGACTTGTTAATATTAATTTATATTGTTTTAAAATTTTAAAAAACAAATGACCTTTAATATTAATTTCGATTTTGATTTAAAACAATTTAGAGAAACAAGGATGTCAATTTGTATTTCTTTTTTTATTTATTAATATTGGTATAATCACTATATGGTAAAAAGAATTCAAAATTGTCACATTAAATTTTAATTAAAAATAAATCCGGATATATGTTATACAATTTATTTATTATTAAATGAATATATTGATTCATTTTAATTATAAAATGAAAATAAAAAGTTATTTATTTATTTATATATAAAAGAAAAAGGAAGTGCAAAAAAAAAAAACTTTTAATATTAGGAATATCTTGGGCATTTAAGTAAATTTATACAGATGGTATTATGGTAATTTTACCATTTATCTTCGTTGAGTTAGGGCTGAAAATCACCATAGCCATAGCGTGAGGGCAAAAGAATAGCACGCAGGCGCTGGAACGGAGAAGAAAACTGGCAGATCAGTGGCGTGGGTGGCTTCGGTGAAGAAGCAGGGCTGTGTAGGTCTCGGTTTAGGGGGCTGAATCGTGACGCCGTGAGTCTCAGTGTAGAGGACTGTGACTCGCCGCCGTGTGTCTCAGCTCAGCGGCGGTTTGAGCGTCGTTGTGGGCGTCAGTTCCATTTGCTTGGAAGCTTTAAGATATCGATTACAGGGGCAGCCAGAAATGGGTCCTTTTTAAGATGAAATCGACGGTAACCTTGATGTTAACAATCGGTGGAGATTGTGGTTAGCTTTCAGGGGAATCTGATTCTCAGTTTGTGTGGGTTAATTGCTTCATTGTATCTCTGTATTAACGACTTGATGCTCTTACACTGTAAGTGGAGACTGCTGTCTGCTAGGAATGTTCTGCATTACTCGTACACTGTAAGTGGTACCTCTAAATTTCTTCCGTTCTTGTTTGTTTGTGTAATATTGCTCCGGAAATCGATTGTTTTGCTGTGAACTGTGTTTGTTACCAATTAGATTGGAAGAAGAATTCTGTTGTATATCTAAGTTCTGAAGTTGATGGATGTGTAAGAATGTCCAAATTAGAGTTCATGGCAGTAGTTTGTAGATGTTCTTGATAGGTGGAATCCAGATTATTTCTCAGTCTCTTCTAGGTCTTGATTATTGGACTTTTTGATATAGTAACCTTAGCCAGTTGGGTCTCCGAACCCTCATAACTCTCATGGATATTCTAACCCCTAGATAACGAATGCGAAAACTCCCAAATCAAGCTGATTTCATTTCAAATGATGGATACCACTTGTCACAATTACGGGACAGTGATTGTGGTTACTTGTTCTATCCCAACGAACAAATTAGTTGTGAGAAATTCAAACTTCGCGGACAATGTTGGCCTTCCACGTTTGAGAAAAATGCTTTGGAAAACATGAGCCAAAAAATATGTTGGAAACAATTTGAAAGAAAACAATGTTATAAGCTATAAAAGTGATTAGGCCACCACAATGGCTTTGATAGCATATAACCCGTGTAGGAAGACACTCTTGGGAATTCAATCTAGCAACCTTATTGAAGAATAAGACCTTTAGATCTAAACTATCCTAGAACCTCAAAACAATAAGGAAACACCTCAAGGGAAAGTAAGATCCAAATAACTGTGTTGATCAAATATCTCCAGCGAAAGAAACTTCTTTGAGATTTTAATTAGTCCATAAGTAACATCGATCATGTCAAACTAGAATGATTTTAAGCACTTAATCGACATACGATTGCAAAGAAACTTAGCATTGCCTAAAAGATAGCAGAAACTCTCTTTTTACTACATTTTCCAGGTCTAAACCCTTGACTTTCCATGCAACGGCCTAAACCCACCGCTAGTAGATATTGTCCTCTTTGAGCTTTTCCTTTCGGGCTTCCGCTCAAGGCTTTTAAAACGCATCTGCTAGAGAGAGGTTTCCACAACCTTATAAAGGGTGTTTCGTTCTCCTCCCCAACCAATGTGGGATCTCACAGTCCACCCCCCTTCAGGGTCCAGCGTCCTCGCTGGCATTCGTTCCTTTCTTCAATCGATGTGGGACCCTCGCCAAATCCACCCCCCTTTGGGGCCCAGCGTCCTTACTAGCACACCGCCTCGTGTCTACCCCTTTCAGGGAACAGCCTCCTCGTTGGCACCTCTTCCGGTGTCTGGCTCTTAGATCATTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGACTTTCCTTTTCAGGCTTCCCCTCAAGGCTTTAAAATGTGTCTGCTAGGGTGTTTCGTTCTCCTTCCCAACCAATGTGGGATCTCACATTCCAAGAGACATTTCAAGAGTTCTAAGCTTGATACTTTATGACCATAATTAGCCACTATATAAACAAAAAGGTTTAAAATATATTAATGAAACACCATAACTTTATAACTCTAGATTATCATCCACCCAAAATTTGTAACCATCCAAGAAAAGATTAAGCTTGATTCTTCTTTAATGTGGCATTAATTGCCACTTGAGTTTATCTTGTGGTAATTTGAATAACATTTTGTTACATCTTCCTTGAAGTTCATATTGCATGATTGAGATCTTGATTCATATCACTTTTGAATCCTTTTTGATCTGTAATTGGCAGGCTTTGATATGGATCATGTTTTCTGAGCTTATATAACCCATCTTTCTTCAGTAACTTAATTTACCAAATAAAATTTCGTGCACATCAATTATCGAAAACCCGGCTTTGAATGCTCAATAGTCATTTAACAATTCATCAATATCATTTATCTTTCTGAGCTTAAACTTTGTTAAAAACTACATCTTACCCACCTTGACATACACATGACTTATGCTTCGAATTGTGTCTTTGCATGTCTAATACAGAATAGCATTACATCCGTCCCAGTTGGTAACCCTCAAAACTGGCTGCTTTATGCCATCAGACGCTTTGGCCATCAGCCATCTACTACCAATATCTCTCCTGATGAAGAGAAGGTGGAGGATGAAGTCTTAAATCAGATTACTGCCACAAGGGAAAATGCCTCGATGTGTAGCCACGAAACCTTCGACATTTGCATCGATAAGATGTGTAGATCAGACAATCTTACAGCTGCTGCTCAACTACTTAAATCATCATGTGATAGGAAAATATCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGAGGAGACACTACCCTTTTATGTCAAGTATTTAAAGATTCTCTTGTTTCCCGTAAACCGTTGAGTTCGACCTCGTACATGAATTTTGCCAAGGCCTTTGCCAGGACAGATGATAGTAGCAAGCTACTGGAATATGTCAAAGAAATAATCGAGATGACGTTTCCAAACTTCCTGGTCATAAACAGAATAATCTTCGCCTTCTCCGAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATATAGACCAGATTTGTACACATATAACATCATTTTGGATGCGCTAGGTCGTGCAGGTCGAATGGATGAAATTCTTCATATGTTTGTTTCCATGAAAGAAGATGGCATCGCCCCGGATATTGTGTCGTATAATACATTAATAAATAGCTTAAGGAAGGTGGGTAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAGAATTGAACCTGATTTGCTTACTTATACTGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACGTCGAGGAGGCTTTAACACTCCTCAGGGAGATGAAGCTTAAGCATATCCGACCTTCGAGCTATATCTACAAGTCTCTCATTAGTAATTCAATGAAGATTGGGAAGGTGGAGTTGGCTATGAACCTTCTCAAGGAGATGAAATTAAGTTATTCAAAACTTGCTGGTCCAAAGGATTTCAAACGAAAAAGAAGTTAACCAATTACAAGGCTTTTCATGGTGACTTTCAGGCTGATAAACCTGTGGATGGCTTTAATCTTCAAACTGAGATTTTCCAGAATTACTGCTGTCTGTAGGTAATATTTGTACCCATTTATCTACCTCTTTGATGTCTGACATGAAATACAAAGATTAGTTACAGTGATCAGTTGAATTTTACTATTTCTAGTATGTATGCTTCAGAGGGACAGAGTTCGGGATTCAAATCTATATCCATAAATACCATATCTTGACTCGAGCCAACTCAATAAGGAAAACATGACATAAAGAAAGCTCAGAATCTGTTTTTTTTTATCTGGGTAAAGCTGCTTCTCTCCTTCCCCTCGTAACCTCGGTAGAGCTGCAGAGATTACCTCGTTCCCTTAGGTTTGTTTGCTCTTGAACCTTTGACTCTTTTTCCTGACTTGATTTCACGAGATAAAGCAGTTGAGGATTGCAACGTATTTGACCTGGAATTGAGGGACGAAGACGAAGATGAAGAATTGATTGATAACTTGAAAATTATTTGGGAGGACCGGTTTGTTGGTTTGAGAGAATTGTACAGAGAATGGGTATGAAGAAACAGTTTCCTTGAGTGAACAGAAAATCTTGATTATGTTTGGTTTGCATAATTTGAAGTTTATATGCAACTTATTGAGCAAACTTGTGGGGATGGAAACCTCAGATCCAGGCTTGGTTGAACAAATTTTACTGTTTAAAAGCCCCTCATGGTTCAGATCTTTCACAGTAGACCAGACATTACAGAAGCTAGAAGTTAAGGAACCTGTTGATCTGGCAGCTGATCAATTTGAGGGGCGTATGCCTGATTGCATAAGACCATCGAAATATTCAGCCTAA

mRNA sequence

ATGAGGCGCTGGAACGGAGAAGAAAACTGGCAGATCAGTGGCGTGGGTGGCTTCGGTGAAGAAGCAGGGCTGTGTAGGTCTCGGTTTAGGGGGCTGAATCGTGACGCCGTGAGTCTCAGTGTAGAGGACTGTGACTCGCCGCCGTGTGTCTCAGCTCAGCGGCGGTTTGAGCGTCGTTGTGGGCGTCAGTTCCATTTGCTTGGAAGCTTTAAGATATCGATTACAGGGGCAGCCAGAAATGGTTTGTGTGGGTTAATTGCTTCATTGTATCTCTGTATTAACGACTTGATGCTCTTACACTGTAAGTGGAGACTGCTGTCTGCTAGGAATGTTCTGCATTACTCGTACACTAATAGCATTACATCCGTCCCAGTTGGTAACCCTCAAAACTGGCTGCTTTATGCCATCAGACGCTTTGGCCATCAGCCATCTACTACCAATATCTCTCCTGATGAAGAGAAGGTGGAGGATGAAGTCTTAAATCAGATTACTGCCACAAGGGAAAATGCCTCGATGTGTAGCCACGAAACCTTCGACATTTGCATCGATAAGATGTGTAGATCAGACAATCTTACAGCTGCTGCTCAACTACTTAAATCATCATGTGATAGGAAAATATCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGAGGAGACACTACCCTTTTATGTCAAGTATTTAAAGATTCTCTTGTTTCCCGTAAACCGTTGAGTTCGACCTCGTACATGAATTTTGCCAAGGCCTTTGCCAGGACAGATGATAGTAGCAAGCTACTGGAATATGTCAAAGAAATAATCGAGATGACGTTTCCAAACTTCCTGGTCATAAACAGAATAATCTTCGCCTTCTCCGAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATATAGACCAGATTTGTACACATATAACATCATTTTGGATGCGCTAGGTCGTGCAGGTCGAATGGATGAAATTCTTCATATGTTTGTTTCCATGAAAGAAGATGGCATCGCCCCGGATATTGTGTCGTATAATACATTAATAAATAGCTTAAGGAAGGTGGGTAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAGAATTGAACCTGATTTGCTTACTTATACTGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACGTCGAGGAGGCTTTAACACTCCTCAGGGAGATGAAGCTTAAGCATATCCGACCTTCGAGCTATATCTACAAGTCTCTCATTAGTAATTCAATGAAGATTGGGAAGGTGGAGTTGGCTATGAACCTTCTCAAGGAGATGAAATTAAGTTATTCAAAACTTGCTGGTCCAAAGGATTTCAAACGAAAAAGAATTGAGGATTGCAACGTATTTGACCTGGAATTGAGGGACGAAGACGAAGATGAAGAATTGATTGATAACTTGAAAATTATTTGGGAGGACCGATCTTTCACAGTAGACCAGACATTACAGAAGCTAGAAGTTAAGGAACCTGTTGATCTGGCAGCTGATCAATTTGAGGGGCGTATGCCTGATTGCATAAGACCATCGAAATATTCAGCCTAA

Coding sequence (CDS)

ATGAGGCGCTGGAACGGAGAAGAAAACTGGCAGATCAGTGGCGTGGGTGGCTTCGGTGAAGAAGCAGGGCTGTGTAGGTCTCGGTTTAGGGGGCTGAATCGTGACGCCGTGAGTCTCAGTGTAGAGGACTGTGACTCGCCGCCGTGTGTCTCAGCTCAGCGGCGGTTTGAGCGTCGTTGTGGGCGTCAGTTCCATTTGCTTGGAAGCTTTAAGATATCGATTACAGGGGCAGCCAGAAATGGTTTGTGTGGGTTAATTGCTTCATTGTATCTCTGTATTAACGACTTGATGCTCTTACACTGTAAGTGGAGACTGCTGTCTGCTAGGAATGTTCTGCATTACTCGTACACTAATAGCATTACATCCGTCCCAGTTGGTAACCCTCAAAACTGGCTGCTTTATGCCATCAGACGCTTTGGCCATCAGCCATCTACTACCAATATCTCTCCTGATGAAGAGAAGGTGGAGGATGAAGTCTTAAATCAGATTACTGCCACAAGGGAAAATGCCTCGATGTGTAGCCACGAAACCTTCGACATTTGCATCGATAAGATGTGTAGATCAGACAATCTTACAGCTGCTGCTCAACTACTTAAATCATCATGTGATAGGAAAATATCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGAGGAGACACTACCCTTTTATGTCAAGTATTTAAAGATTCTCTTGTTTCCCGTAAACCGTTGAGTTCGACCTCGTACATGAATTTTGCCAAGGCCTTTGCCAGGACAGATGATAGTAGCAAGCTACTGGAATATGTCAAAGAAATAATCGAGATGACGTTTCCAAACTTCCTGGTCATAAACAGAATAATCTTCGCCTTCTCCGAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATATAGACCAGATTTGTACACATATAACATCATTTTGGATGCGCTAGGTCGTGCAGGTCGAATGGATGAAATTCTTCATATGTTTGTTTCCATGAAAGAAGATGGCATCGCCCCGGATATTGTGTCGTATAATACATTAATAAATAGCTTAAGGAAGGTGGGTAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAGAATTGAACCTGATTTGCTTACTTATACTGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACGTCGAGGAGGCTTTAACACTCCTCAGGGAGATGAAGCTTAAGCATATCCGACCTTCGAGCTATATCTACAAGTCTCTCATTAGTAATTCAATGAAGATTGGGAAGGTGGAGTTGGCTATGAACCTTCTCAAGGAGATGAAATTAAGTTATTCAAAACTTGCTGGTCCAAAGGATTTCAAACGAAAAAGAATTGAGGATTGCAACGTATTTGACCTGGAATTGAGGGACGAAGACGAAGATGAAGAATTGATTGATAACTTGAAAATTATTTGGGAGGACCGATCTTTCACAGTAGACCAGACATTACAGAAGCTAGAAGTTAAGGAACCTGTTGATCTGGCAGCTGATCAATTTGAGGGGCGTATGCCTGATTGCATAAGACCATCGAAATATTCAGCCTAA

Homology

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BLAST of CmoCh13G002710 vs. Swiss-Prot
Match: PPR35_ARATH (Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana GN=At1g11900 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.2e-63
Identity = 144/315 (45.71%), Postives = 206/315 (65.40%), Query Frame = 1


Query: 153 EKVEDEVLNQITATRENAS-MCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSS 212
           E+ E+E+L +I    E+ S + S   +   ++K  R  NL+ A  LL+S  ++ I L  S
Sbjct: 47  EEDEEELLKKIVNHSESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNICLPIS 106

Query: 213 KAYDMVLLAASERGDTTLLCQVFKDSLV--SRKPLSSTSYMNFAKAFARTDDSSKLLEYV 272
             +  +L AA E  D  L C+VF++ L+   ++PLSS  Y+N A+AF  TDD + L   +
Sbjct: 107 -VFKNLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFINTDDCTYLTSLL 166

Query: 273 KEIIEMTFP-NFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRA 332
           KEI E + P   +V+NRIIFAF+E R+IDK L I  +MK    +PD+ TYN +LD LGRA
Sbjct: 167 KEISESSLPYRLIVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGRA 226

Query: 333 GRMDEILHMFVSMKED-GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLT 392
           G ++EIL +  +MKED  ++ +I++YNT++N +RK  R DMCL+ + EMV   IEPDLL+
Sbjct: 227 GLVNEILGVLSTMKEDCSVSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLLS 286

Query: 393 YTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 452
           YTA+I+S GRSGNV+E+L L  EMK + IRPS Y+Y++LI    K G  + A+ L  E+K
Sbjct: 287 YTAVIDSLGRSGNVKESLRLFDEMKQRQIRPSVYVYRALIDCLKKSGDFQSALQLSDELK 346

Query: 453 LSYS-KLAGPKDFKR 462
            + S  LAGP+DFKR
Sbjct: 347 NTSSLDLAGPQDFKR 360

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BLAST of CmoCh13G002710 vs. Swiss-Prot
Match: PPR76_ARATH (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-25
Identity = 64/201 (31.84%), Postives = 113/201 (56.22%), Query Frame = 1


Query: 248 SYMNFAKAFARTDDSSKLLEYVKEIIEM-TFPNFLVINRIIFAFSECREIDKALQIFNQM 307
           SYM+  ++      + + +E + +I E     + ++ N +  A  + ++I     +F +M
Sbjct: 409 SYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKM 468

Query: 308 KLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRL 367
           K     PD++TYNI++ + GR G +DE +++F  ++     PDI+SYN+LIN L K G +
Sbjct: 469 KKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDV 528

Query: 368 DMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSL 427
           D   + F+EM    + PD++TY+ L+E FG++  VE A +L  EM +K  +P+   Y  L
Sbjct: 529 DEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNIL 588

Query: 428 ISNSMKIGKVELAMNLLKEMK 448
           +    K G+   A++L  +MK
Sbjct: 589 LDCLEKNGRTAEAVDLYSKMK 609

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BLAST of CmoCh13G002710 vs. Swiss-Prot
Match: PPR91_ARATH (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 5.0e-24
Identity = 74/294 (25.17%), Postives = 143/294 (48.64%), Query Frame = 1


Query: 157 DEVLNQITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDM 216
           D+ LN            +  T+   I  +C     + A++LL    +RKI+      +  
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN-PDVFTFSA 332

Query: 217 VLLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFA---RTDDSSKLLEYVKEII 276
           ++ A  + G      +++ + +      S  +Y +    F    R D++ ++ E++  + 
Sbjct: 333 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM--VS 392

Query: 277 EMTFPNFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDE 336
           +  FP+ +  N +I  F + + +++ +++F +M       +  TYNI++  L +AG  D 
Sbjct: 393 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 452

Query: 337 ILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIE 396
              +F  M  DG+ P+I++YNTL++ L K G+L+  ++ F  +   ++EP + TY  +IE
Sbjct: 453 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 512

Query: 397 SFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 448
              ++G VE+   L   + LK ++P    Y ++IS   + G  E A  L KEMK
Sbjct: 513 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

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BLAST of CmoCh13G002710 vs. Swiss-Prot
Match: PP344_ARATH (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.0e-24
Identity = 101/373 (27.08%), Postives = 171/373 (45.84%), Query Frame = 1


Query: 80   NGLCGLIASLYLCINDLMLLHCKWRLLSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRF 139
            NG+C    S+ + I   +   CK   +S    L   +T  +   P     N L+  +   
Sbjct: 742  NGICRDGDSILVPI---IRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGL--- 801

Query: 140  GHQPSTTNISPDEEKVEDEVLNQITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLK 199
                    +  D  ++  +V  Q+ +T     +    T++  +D   +S  +    +L K
Sbjct: 802  --------LEADMIEIAQDVFLQVKST---GCIPDVATYNFLLDAYGKSGKIDELFELYK 861

Query: 200  SSCDRKISLSSSKAYDMVLLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFART 259
                 +   +++  +++V+    + G+      ++ D L+S +  S T+   +       
Sbjct: 862  EMSTHECE-ANTITHNIVISGLVKAGNVDDALDLYYD-LMSDRDFSPTA-CTYGPLIDGL 921

Query: 260  DDSSKLLEYVKEIIEMTF-----PNFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPD 319
              S +L E  K++ E        PN  + N +I  F +  E D A  +F +M     RPD
Sbjct: 922  SKSGRLYE-AKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPD 981

Query: 320  LYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFR 379
            L TY++++D L   GR+DE LH F  +KE G+ PD+V YN +IN L K  RL+  L+ F 
Sbjct: 982  LKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFN 1041

Query: 380  EMVAMR-IEPDLLTYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKI 439
            EM   R I PDL TY +LI + G +G VEEA  +  E++   + P+ + + +LI      
Sbjct: 1042 EMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLS 1093

Query: 440  GKVELAMNLLKEM 447
            GK E A  + + M
Sbjct: 1102 GKPEHAYAVYQTM 1093

[Close]

BLAST of CmoCh13G002710 vs. Swiss-Prot
Match: PPR96_ARATH (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-23
Identity = 75/294 (25.51%), Postives = 144/294 (48.98%), Query Frame = 1


Query: 157 DEVLNQITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDM 216
           ++ LN  T         +  T++  I  +C     + A++LL    +RKI+  +   +  
Sbjct: 272 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN-PNVVTFSA 331

Query: 217 VLLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFA---RTDDSSKLLEYVKEII 276
           ++ A  + G      +++ + +         +Y +    F    R D++  + E +  I 
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM--IS 391

Query: 277 EMTFPNFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDE 336
           +  FPN +  N +I  F + + +++ +++F +M       +  TYN ++  L +AG  D 
Sbjct: 392 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 451

Query: 337 ILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIE 396
              +F  M  DG+ PDI++Y+ L++ L K G+L+  L+ F  +   ++EPD+ TY  +IE
Sbjct: 452 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 511

Query: 397 SFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 448
              ++G VE+   L   + LK ++P+  IY ++IS   + G  E A  L +EMK
Sbjct: 512 GMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

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BLAST of CmoCh13G002710 vs. TrEMBL
Match: A0A0A0LXZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132170 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 8.7e-132
Identity = 259/362 (71.55%), Postives = 294/362 (81.22%), Query Frame = 1


Query: 103 WRLLSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVEDEVLNQ 162
           + L   RN LHYSY N I S PVGN Q W LYAI+   HQ S T I P+E KV DE LNQ
Sbjct: 4   YHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQ 63

Query: 163 ITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAAS 222
           I A  ENAS C HE  D CIDK+CR  +L AAA LLKS C+ K+   SS+AYDMVLLAAS
Sbjct: 64  IIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKV-FKSSEAYDMVLLAAS 123

Query: 223 ERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLV 282
           ERGDT LLC+VFK +L+S K LSS SYM+FA+AF +T+DS KLLE VKEIIE+T    +V
Sbjct: 124 ERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDS-KLLECVKEIIEITSQKCIV 183

Query: 283 INRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMK 342
           INRIIFAFSE REIDKA QIFNQMK LS  PDLYTYNIILD +GRAGR+DEILH+FVSMK
Sbjct: 184 INRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMK 243

Query: 343 EDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVE 402
           E+GIAPDIVSYNTLINSLRKVGRLD+ +IYFREMVAM IEPDLLTYTALIES+GR GN+E
Sbjct: 244 EEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLE 303

Query: 403 EALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRK 462
           EALTLL+EMKL +IRPSSYIY+SLI NSM + KVELA +LL EMKLS S+LA P+DFKR+
Sbjct: 304 EALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKRR 363

Query: 463 RI 465
           ++
Sbjct: 364 KM 363

[Close]

BLAST of CmoCh13G002710 vs. TrEMBL
Match: A0A061EAL5_THECC (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_007945 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.2e-90
Identity = 190/378 (50.26%), Postives = 261/378 (69.05%), Query Frame = 1


Query: 97  MLLHCKWRLLSARNVL-------HYSYTNSITSVPVGNPQNWLLY-AIRRF--GHQPSTT 156
           +LL CK    S  +++       HY + N ITS+PVG P   LLY  + +    ++   T
Sbjct: 10  LLLRCKGTFNSYSSLIPGWGNRGHYPHDNYITSIPVGFPCICLLYPTVSKIVGNYKLLAT 69

Query: 157 NISPDEEKVEDEVLNQITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKI 216
             +PDEE+V DEVLNQI AT EN    S ET +  + K+C++ NL+ A +LL+S  D+ I
Sbjct: 70  QAAPDEEEVTDEVLNQILATCENTPKSSGETCNAYVHKLCKAGNLSMAIRLLQSLRDKNI 129

Query: 217 SLSSSKAYDMVLLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLL 276
            + +  AY+ +L AA+ER +  L  Q+FKD LV   PLSST Y+N A++F +++D + L+
Sbjct: 130 FIPN--AYNTLLAAAAERNEIDLSFQIFKDLLVFHGPLSSTCYLNLARSFVKSNDCTALI 189

Query: 277 EYVKEIIEMTFPNFL-VINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDAL 336
            +VK++ E+ FP+   VINRII AF+EC +I+KAL +FNQ+K    +PD+ TYN ILD L
Sbjct: 190 RFVKQVSELAFPSSTTVINRIILAFAECWQIEKALLVFNQIKSFGCKPDVITYNTILDIL 249

Query: 337 GRAGRMDEILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDL 396
           GRAGR+DE++H F SMKE G+ PDI++YNTL+N+LRK+GRLDMCL++FREM    +EPDL
Sbjct: 250 GRAGRVDEMVHEFASMKEAGLVPDIITYNTLLNNLRKLGRLDMCLVFFREMSDTGVEPDL 309

Query: 397 LTYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKE 456
           LTY A+IE+FGRSGN+ EAL L REMK + I PS YIY+SLI    K GKV+LAM+  +E
Sbjct: 310 LTYRAMIETFGRSGNINEALRLFREMKQRQIYPSVYIYRSLICILKKAGKVDLAMSFSEE 369

Query: 457 M-KLSYSKLAGPKDFKRK 463
           M   S S +A  ++FKRK
Sbjct: 370 MNSSSLSDIAATENFKRK 385

[Close]

BLAST of CmoCh13G002710 vs. TrEMBL
Match: A0A067EX48_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016395mg PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 9.1e-89
Identity = 183/357 (51.26%), Postives = 254/357 (71.15%), Query Frame = 1


Query: 112 LHYSYTNSITSVPVGNPQNWLLYAIRRFG-----HQPSTTNISPDEEKVEDEVLNQITAT 171
           L  +  N ITSVPVG+   W+  +          +Q   T  S DEE V +EVLN+I A+
Sbjct: 36  LRRTKVNCITSVPVGSL--WISPSFATVSKISGNYQSLVTGASLDEEDVTNEVLNRILAS 95

Query: 172 RENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAASERGD 231
            EN S  + E  +  I+K+C++ N++AA +LL+S  D+ I L +  AY+ VL+A++E  D
Sbjct: 96  VENGSKSAKEMCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETND 155

Query: 232 TTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFP-NFLVINR 291
             L  Q+ KD LVS + LSS  Y NFA+AF  TDD ++LL +++E++++  P + +V+NR
Sbjct: 156 IDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNR 215

Query: 292 IIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDG 351
           IIFAF++ R+I+KAL IF+ +K L  +PDL TYNI+LD LGR GR++++L+ F SMKE G
Sbjct: 216 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG 275

Query: 352 IAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEAL 411
           + PD +SYNTL+N+LRK+ RLD+CLIYFREM    I+PDLLTYTALI+SFGR+GN+EE+L
Sbjct: 276 VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 335

Query: 412 TLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRK 463
            L  +MK + IRPS Y+Y+SLI N  K+GKV+LAM + +EM  S S LAGPKDFKRK
Sbjct: 336 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFKRK 388

[Close]

BLAST of CmoCh13G002710 vs. TrEMBL
Match: E0CU43_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00220 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 8.5e-87
Identity = 191/356 (53.65%), Postives = 252/356 (70.79%), Query Frame = 1


Query: 114 YSYTNSITSVPVGNPQNWLL--YAI--RRFG-HQPSTTNISPDEEKVEDEVLNQITATRE 173
           + Y+N I+++P  +  +W+L  +AI  +  G +Q   T  SPDEE V DE LN+I +  E
Sbjct: 33  HRYSNFISAIP--DDVSWILPFFAILSKSIGSYQSLATEASPDEEVVPDEFLNEILSDIE 92

Query: 174 NASMCSHETF-DICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAASERGDT 233
            +   S E      IDK+ ++ N +AAA+ ++S  D+ I LS + AY+++L+AASE    
Sbjct: 93  RSPKFSSEKLCTTYIDKLLKAGNPSAAARFMQSLHDKHIFLSPN-AYNLLLVAASEANAI 152

Query: 234 TLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFP-NFLVINRI 293
             L Q+FKD LVS KPLSSTSY N AK F +TDDS  LL++V+E+ E+TFP N  ++NRI
Sbjct: 153 DFLSQIFKDLLVSNKPLSSTSYFNVAKVFTKTDDSV-LLKFVREVSELTFPRNATILNRI 212

Query: 294 IFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGI 353
           I AF+ECR+I+K+L IF+ MK L  +PDL TYN +L  LGRAGR+DE+LH F SMK   I
Sbjct: 213 IHAFAECRQIEKSLIIFDHMKSLKCKPDLITYNTVLGFLGRAGRLDEMLHEFSSMKVANI 272

Query: 354 APDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALT 413
           APDI+SYNTL+NSL+KVGRLD+CL++FREM    ++PDL TY ALIE FG+SGN+EEAL 
Sbjct: 273 APDIISYNTLLNSLQKVGRLDLCLVFFREMGENGLKPDLRTYRALIEGFGQSGNLEEALR 332

Query: 414 LLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRK 463
           L  EMK   I PS YIY+SLI+ S K+GKVELAM+L +EM      L GPKDFK+K
Sbjct: 333 LFSEMKQGQICPSIYIYRSLINYSKKMGKVELAMSLSEEMNACLPDLIGPKDFKQK 384

[Close]

BLAST of CmoCh13G002710 vs. TrEMBL
Match: B9HNJ0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07170g PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.1e-86
Identity = 184/364 (50.55%), Postives = 244/364 (67.03%), Query Frame = 1


Query: 105 LLSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRF----GHQPS-TTNISPDEEKVEDEV 164
           L     V  +   N ITS+PVG+  +W+L          GH    TT  S D E+++D+ 
Sbjct: 19  LFHLHKVRFFLRKNCITSIPVGS--HWILPHFATITEVIGHYKQLTTRASFDGEEIKDDN 78

Query: 165 LNQITATRENASMCSHETFDIC-IDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVL 224
           LNQ+    ENA  C+        +  +C++  L AA +LL+   D+ I L  S AY+++L
Sbjct: 79  LNQMLEAVENAPECTTRKVGTAYVHNLCKAGTLFAAVRLLRLLRDKNIFLGPS-AYNIIL 138

Query: 225 LAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFP 284
           + ASE+ D  +L QVFKD ++S + L S+ Y+  A+ F +++D  +LL  VKE+ E+TFP
Sbjct: 139 VTASEKNDVEILSQVFKDLILSFQSLPSSLYLKLARGFVKSNDDVQLLRLVKEVSELTFP 198

Query: 285 NFL-VINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHM 344
           +   V+NR IFAF+EC + DKA+ IF QM+ L  +PDL TYN +LD LGRAGR+DE+L  
Sbjct: 199 SSTKVVNRFIFAFAECGQFDKAILIFEQMENLKCKPDLVTYNTVLDLLGRAGRIDEMLGE 258

Query: 345 FVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGR 404
           F SMKE GI PD +SYNTL+N L KVGRLD+C +YFR+MV   IEPDLLTYTALI SFG+
Sbjct: 259 FASMKEAGILPDFISYNTLLNQLTKVGRLDLCSVYFRDMVGNGIEPDLLTYTALIWSFGQ 318

Query: 405 SGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPK 462
           SGN+EE+L L  EMK K IRPS YIY+SLI++  K+GK+ELAM  L+EM  S S LAGPK
Sbjct: 319 SGNIEESLRLFNEMKTKQIRPSIYIYRSLIASLKKMGKIELAMTFLEEMNASMSNLAGPK 378

[Close]

BLAST of CmoCh13G002710 vs. TAIR10
Match: AT1G11900.1 (AT1G11900.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 244.2 bits (622), Expect = 1.8e-64
Identity = 144/315 (45.71%), Postives = 206/315 (65.40%), Query Frame = 1


Query: 153 EKVEDEVLNQITATRENAS-MCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSS 212
           E+ E+E+L +I    E+ S + S   +   ++K  R  NL+ A  LL+S  ++ I L  S
Sbjct: 47  EEDEEELLKKIVNHSESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNICLPIS 106

Query: 213 KAYDMVLLAASERGDTTLLCQVFKDSLV--SRKPLSSTSYMNFAKAFARTDDSSKLLEYV 272
             +  +L AA E  D  L C+VF++ L+   ++PLSS  Y+N A+AF  TDD + L   +
Sbjct: 107 -VFKNLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFINTDDCTYLTSLL 166

Query: 273 KEIIEMTFP-NFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRA 332
           KEI E + P   +V+NRIIFAF+E R+IDK L I  +MK    +PD+ TYN +LD LGRA
Sbjct: 167 KEISESSLPYRLIVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGRA 226

Query: 333 GRMDEILHMFVSMKED-GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLT 392
           G ++EIL +  +MKED  ++ +I++YNT++N +RK  R DMCL+ + EMV   IEPDLL+
Sbjct: 227 GLVNEILGVLSTMKEDCSVSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLLS 286

Query: 393 YTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 452
           YTA+I+S GRSGNV+E+L L  EMK + IRPS Y+Y++LI    K G  + A+ L  E+K
Sbjct: 287 YTAVIDSLGRSGNVKESLRLFDEMKQRQIRPSVYVYRALIDCLKKSGDFQSALQLSDELK 346

Query: 453 LSYS-KLAGPKDFKR 462
            + S  LAGP+DFKR
Sbjct: 347 NTSSLDLAGPQDFKR 360

[Close]

BLAST of CmoCh13G002710 vs. TAIR10
Match: AT1G51965.1 (AT1G51965.1 ABA Overly-Sensitive 5)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-26
Identity = 64/201 (31.84%), Postives = 113/201 (56.22%), Query Frame = 1


Query: 248 SYMNFAKAFARTDDSSKLLEYVKEIIEM-TFPNFLVINRIIFAFSECREIDKALQIFNQM 307
           SYM+  ++      + + +E + +I E     + ++ N +  A  + ++I     +F +M
Sbjct: 409 SYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKM 468

Query: 308 KLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRL 367
           K     PD++TYNI++ + GR G +DE +++F  ++     PDI+SYN+LIN L K G +
Sbjct: 469 KKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDV 528

Query: 368 DMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSL 427
           D   + F+EM    + PD++TY+ L+E FG++  VE A +L  EM +K  +P+   Y  L
Sbjct: 529 DEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNIL 588

Query: 428 ISNSMKIGKVELAMNLLKEMK 448
           +    K G+   A++L  +MK
Sbjct: 589 LDCLEKNGRTAEAVDLYSKMK 609

[Close]

BLAST of CmoCh13G002710 vs. TAIR10
Match: AT1G62670.1 (AT1G62670.1 rna processing factor 2)

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-25
Identity = 74/294 (25.17%), Postives = 143/294 (48.64%), Query Frame = 1


Query: 157 DEVLNQITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDM 216
           D+ LN            +  T+   I  +C     + A++LL    +RKI+      +  
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN-PDVFTFSA 332

Query: 217 VLLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFA---RTDDSSKLLEYVKEII 276
           ++ A  + G      +++ + +      S  +Y +    F    R D++ ++ E++  + 
Sbjct: 333 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM--VS 392

Query: 277 EMTFPNFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDE 336
           +  FP+ +  N +I  F + + +++ +++F +M       +  TYNI++  L +AG  D 
Sbjct: 393 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 452

Query: 337 ILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIE 396
              +F  M  DG+ P+I++YNTL++ L K G+L+  ++ F  +   ++EP + TY  +IE
Sbjct: 453 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 512

Query: 397 SFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 448
              ++G VE+   L   + LK ++P    Y ++IS   + G  E A  L KEMK
Sbjct: 513 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

[Close]

BLAST of CmoCh13G002710 vs. TAIR10
Match: AT4G31850.1 (AT4G31850.1 proton gradient regulation 3)

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-25
Identity = 101/373 (27.08%), Postives = 171/373 (45.84%), Query Frame = 1


Query: 80   NGLCGLIASLYLCINDLMLLHCKWRLLSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRF 139
            NG+C    S+ + I   +   CK   +S    L   +T  +   P     N L+  +   
Sbjct: 742  NGICRDGDSILVPI---IRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGL--- 801

Query: 140  GHQPSTTNISPDEEKVEDEVLNQITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLK 199
                    +  D  ++  +V  Q+ +T     +    T++  +D   +S  +    +L K
Sbjct: 802  --------LEADMIEIAQDVFLQVKST---GCIPDVATYNFLLDAYGKSGKIDELFELYK 861

Query: 200  SSCDRKISLSSSKAYDMVLLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFART 259
                 +   +++  +++V+    + G+      ++ D L+S +  S T+   +       
Sbjct: 862  EMSTHECE-ANTITHNIVISGLVKAGNVDDALDLYYD-LMSDRDFSPTA-CTYGPLIDGL 921

Query: 260  DDSSKLLEYVKEIIEMTF-----PNFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPD 319
              S +L E  K++ E        PN  + N +I  F +  E D A  +F +M     RPD
Sbjct: 922  SKSGRLYE-AKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPD 981

Query: 320  LYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFR 379
            L TY++++D L   GR+DE LH F  +KE G+ PD+V YN +IN L K  RL+  L+ F 
Sbjct: 982  LKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFN 1041

Query: 380  EMVAMR-IEPDLLTYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKI 439
            EM   R I PDL TY +LI + G +G VEEA  +  E++   + P+ + + +LI      
Sbjct: 1042 EMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLS 1093

Query: 440  GKVELAMNLLKEM 447
            GK E A  + + M
Sbjct: 1102 GKPEHAYAVYQTM 1093

[Close]

BLAST of CmoCh13G002710 vs. TAIR10
Match: AT1G62930.1 (AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 112.8 bits (281), Expect = 6.3e-25
Identity = 75/294 (25.51%), Postives = 144/294 (48.98%), Query Frame = 1


Query: 157 DEVLNQITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDM 216
           ++ LN  T         +  T++  I  +C     + A++LL    +RKI+  +   +  
Sbjct: 272 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN-PNVVTFSA 331

Query: 217 VLLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFA---RTDDSSKLLEYVKEII 276
           ++ A  + G      +++ + +         +Y +    F    R D++  + E +  I 
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM--IS 391

Query: 277 EMTFPNFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDE 336
           +  FPN +  N +I  F + + +++ +++F +M       +  TYN ++  L +AG  D 
Sbjct: 392 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 451

Query: 337 ILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIE 396
              +F  M  DG+ PDI++Y+ L++ L K G+L+  L+ F  +   ++EPD+ TY  +IE
Sbjct: 452 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 511

Query: 397 SFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 448
              ++G VE+   L   + LK ++P+  IY ++IS   + G  E A  L +EMK
Sbjct: 512 GMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

[Close]

BLAST of CmoCh13G002710 vs. NCBI nr
Match: gi|659071898|ref|XP_008462480.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis melo])

HSP 1 Score: 523.1 bits (1346), Expect = 5.8e-145
Identity = 275/361 (76.18%), Postives = 309/361 (85.60%), Query Frame = 1


Query: 103 WRLLSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVEDEVLNQ 162
           ++L   RN+LHYSY N I S+PVGN Q W LYAI+ F HQ S+TNISPDE KV DEVLNQ
Sbjct: 4   YQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQ 63

Query: 163 ITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAAS 222
           I A RENAS CSHE  D CIDK+C   +L AAAQLLKS C+ KISL+SSKAYDMVLLAAS
Sbjct: 64  IIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAAS 123

Query: 223 ERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLV 282
           ERGDT LLCQVFK ++VS K LSS SYM+FA+AF +T+DSSKLLE VKEI+E+T  N  V
Sbjct: 124 ERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSV 183

Query: 283 INRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMK 342
           INRIIFAFS+CREIDKA QIFNQMK LS  PDLYTYNI+LD LGRAGR++EILH+FVSMK
Sbjct: 184 INRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDMLGRAGRVNEILHLFVSMK 243

Query: 343 EDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVE 402
           ++GIAPDIVSYNTLINSLRKVGRLD+ LIYFREMVAM I+PDLLTYTALIESFGR GN+E
Sbjct: 244 DEGIAPDIVSYNTLINSLRKVGRLDISLIYFREMVAMGIKPDLLTYTALIESFGRFGNIE 303

Query: 403 EALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRK 462
           EALTLL+EMKLK I PSSYIYKSLI+NS K+GKVELA NLL EMKLS SKLA P+DFKR+
Sbjct: 304 EALTLLKEMKLKKICPSSYIYKSLIANSKKMGKVELATNLLNEMKLSESKLARPEDFKRR 363

Query: 463 R 464
           +
Sbjct: 364 K 364

[Close]

BLAST of CmoCh13G002710 vs. NCBI nr
Match: gi|778659264|ref|XP_011654081.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis sativus])

HSP 1 Score: 478.8 bits (1231), Expect = 1.2e-131
Identity = 259/362 (71.55%), Postives = 294/362 (81.22%), Query Frame = 1


Query: 103 WRLLSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVEDEVLNQ 162
           + L   RN LHYSY N I S PVGN Q W LYAI+   HQ S T I P+E KV DE LNQ
Sbjct: 4   YHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQ 63

Query: 163 ITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAAS 222
           I A  ENAS C HE  D CIDK+CR  +L AAA LLKS C+ K+   SS+AYDMVLLAAS
Sbjct: 64  IIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKV-FKSSEAYDMVLLAAS 123

Query: 223 ERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLV 282
           ERGDT LLC+VFK +L+S K LSS SYM+FA+AF +T+DS KLLE VKEIIE+T    +V
Sbjct: 124 ERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDS-KLLECVKEIIEITSQKCIV 183

Query: 283 INRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMK 342
           INRIIFAFSE REIDKA QIFNQMK LS  PDLYTYNIILD +GRAGR+DEILH+FVSMK
Sbjct: 184 INRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMK 243

Query: 343 EDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVE 402
           E+GIAPDIVSYNTLINSLRKVGRLD+ +IYFREMVAM IEPDLLTYTALIES+GR GN+E
Sbjct: 244 EEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLE 303

Query: 403 EALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRK 462
           EALTLL+EMKL +IRPSSYIY+SLI NSM + KVELA +LL EMKLS S+LA P+DFKR+
Sbjct: 304 EALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKRR 363

Query: 463 RI 465
           ++
Sbjct: 364 KM 363

[Close]

BLAST of CmoCh13G002710 vs. NCBI nr
Match: gi|778659267|ref|XP_011654087.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis sativus])

HSP 1 Score: 463.4 bits (1191), Expect = 5.4e-127
Identity = 251/347 (72.33%), Postives = 285/347 (82.13%), Query Frame = 1


Query: 118 NSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVEDEVLNQITATRENASMCSHET 177
           N I S PVGN Q W LYAI+   HQ S T I P+E KV DE LNQI A  ENAS C HE 
Sbjct: 2   NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASKCIHEI 61

Query: 178 FDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAASERGDTTLLCQVFKDS 237
            D CIDK+CR  +L AAA LLKS C+ K+   SS+AYDMVLLAASERGDT LLC+VFK +
Sbjct: 62  IDACIDKICRLGHLAAAAHLLKSLCNEKV-FKSSEAYDMVLLAASERGDTPLLCEVFKVA 121

Query: 238 LVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFSECREID 297
           L+S K LSS SYM+FA+AF +T+DS KLLE VKEIIE+T    +VINRIIFAFSE REID
Sbjct: 122 LLSCKSLSSASYMSFARAFTKTNDS-KLLECVKEIIEITSQKCIVINRIIFAFSERREID 181

Query: 298 KALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSYNTLI 357
           KA QIFNQMK LS  PDLYTYNIILD +GRAGR+DEILH+FVSMKE+GIAPDIVSYNTLI
Sbjct: 182 KAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLI 241

Query: 358 NSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREMKLKHIR 417
           NSLRKVGRLD+ +IYFREMVAM IEPDLLTYTALIES+GR GN+EEALTLL+EMKL +IR
Sbjct: 242 NSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMKLNNIR 301

Query: 418 PSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRI 465
           PSSYIY+SLI NSM + KVELA +LL EMKLS S+LA P+DFKR+++
Sbjct: 302 PSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKRRKM 346

[Close]

BLAST of CmoCh13G002710 vs. NCBI nr
Match: gi|659071901|ref|XP_008462492.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis melo])

HSP 1 Score: 372.5 bits (955), Expect = 1.3e-99
Identity = 193/261 (73.95%), Postives = 219/261 (83.91%), Query Frame = 1


Query: 103 WRLLSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVEDEVLNQ 162
           ++L   RN+LHYSY N I S+PVGN Q W LYAI+ F HQ S+TNISPDE KV DEVLNQ
Sbjct: 4   YQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQ 63

Query: 163 ITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAAS 222
           I A RENAS CSHE  D CIDK+C   +L AAAQLLKS C+ KISL+SSKAYDMVLLAAS
Sbjct: 64  IIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAAS 123

Query: 223 ERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLV 282
           ERGDT LLCQVFK ++VS K LSS SYM+FA+AF +T+DSSKLLE VKEI+E+T  N  V
Sbjct: 124 ERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSV 183

Query: 283 INRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMK 342
           INRIIFAFS+CREIDKA QIFNQMK LS  PDLYTYNI+LD LGRAGR++EILH+FVSMK
Sbjct: 184 INRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDMLGRAGRVNEILHLFVSMK 243

Query: 343 EDGIAPDIVSYNTLINSLRKV 364
           ++GIAPDIVSYNTLINSLRK+
Sbjct: 244 DEGIAPDIVSYNTLINSLRKL 264

[Close]

BLAST of CmoCh13G002710 vs. NCBI nr
Match: gi|590690336|ref|XP_007043481.1| (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 341.3 bits (874), Expect = 3.1e-90
Identity = 190/378 (50.26%), Postives = 261/378 (69.05%), Query Frame = 1


Query: 97  MLLHCKWRLLSARNVL-------HYSYTNSITSVPVGNPQNWLLY-AIRRF--GHQPSTT 156
           +LL CK    S  +++       HY + N ITS+PVG P   LLY  + +    ++   T
Sbjct: 10  LLLRCKGTFNSYSSLIPGWGNRGHYPHDNYITSIPVGFPCICLLYPTVSKIVGNYKLLAT 69

Query: 157 NISPDEEKVEDEVLNQITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKI 216
             +PDEE+V DEVLNQI AT EN    S ET +  + K+C++ NL+ A +LL+S  D+ I
Sbjct: 70  QAAPDEEEVTDEVLNQILATCENTPKSSGETCNAYVHKLCKAGNLSMAIRLLQSLRDKNI 129

Query: 217 SLSSSKAYDMVLLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLL 276
            + +  AY+ +L AA+ER +  L  Q+FKD LV   PLSST Y+N A++F +++D + L+
Sbjct: 130 FIPN--AYNTLLAAAAERNEIDLSFQIFKDLLVFHGPLSSTCYLNLARSFVKSNDCTALI 189

Query: 277 EYVKEIIEMTFPNFL-VINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDAL 336
            +VK++ E+ FP+   VINRII AF+EC +I+KAL +FNQ+K    +PD+ TYN ILD L
Sbjct: 190 RFVKQVSELAFPSSTTVINRIILAFAECWQIEKALLVFNQIKSFGCKPDVITYNTILDIL 249

Query: 337 GRAGRMDEILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDL 396
           GRAGR+DE++H F SMKE G+ PDI++YNTL+N+LRK+GRLDMCL++FREM    +EPDL
Sbjct: 250 GRAGRVDEMVHEFASMKEAGLVPDIITYNTLLNNLRKLGRLDMCLVFFREMSDTGVEPDL 309

Query: 397 LTYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKE 456
           LTY A+IE+FGRSGN+ EAL L REMK + I PS YIY+SLI    K GKV+LAM+  +E
Sbjct: 310 LTYRAMIETFGRSGNINEALRLFREMKQRQIYPSVYIYRSLICILKKAGKVDLAMSFSEE 369

Query: 457 M-KLSYSKLAGPKDFKRK 463
           M   S S +A  ++FKRK
Sbjct: 370 MNSSSLSDIAATENFKRK 385

The following BLAST results are available for this feature:

BLAST of CmoCh13G002710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR35_ARATH	3.2e-63	45.71	Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana GN...	[more]
PPR76_ARATH	3.5e-25	31.84	Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidop...	[more]
PPR91_ARATH	5.0e-24	25.17	Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop...	[more]
PP344_ARATH	5.0e-24	27.08	Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidop...	[more]
PPR96_ARATH	1.1e-23	25.51	Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop...	[more]

BLAST of CmoCh13G002710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXZ6_CUCSA	8.7e-132	71.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132170 PE=4 SV=1	[more]
A0A061EAL5_THECC	2.2e-90	50.26	Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobro...	[more]
A0A067EX48_CITSI	9.1e-89	51.26	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016395mg PE=4 SV=1	[more]
E0CU43_VITVI	8.5e-87	53.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00220 PE=4 SV=...	[more]
B9HNJ0_POPTR	1.1e-86	50.55	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07170g PE=4 SV=1	[more]

BLAST of CmoCh13G002710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11900.1	1.8e-64	45.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G51965.1	2.0e-26	31.84	ABA Overly-Sensitive 5	[more]
AT1G62670.1	2.8e-25	25.17	rna processing factor 2	[more]
AT4G31850.1	2.8e-25	27.08	proton gradient regulation 3	[more]
AT1G62930.1	6.3e-25	25.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CmoCh13G002710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071898\|ref\|XP_008462480.1\|	5.8e-145	76.18	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc...	[more]
gi\|778659264\|ref\|XP_011654081.1\|	1.2e-131	71.55	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc...	[more]
gi\|778659267\|ref\|XP_011654087.1\|	5.4e-127	72.33	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc...	[more]
gi\|659071901\|ref\|XP_008462492.1\|	1.3e-99	73.95	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc...	[more]
gi\|590690336\|ref\|XP_007043481.1\|	3.1e-90	50.26	Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G002710.1	CmoCh13G002710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 422..447 score: 0.04coord: 284..307 score:
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 380..412 score: 1.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 313..361 score: 4.6
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 351..384 score: 1.7E-6coord: 284..314 score: 0.0024coord: 316..350 score: 5.6E-10coord: 387..419 score: 3.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 419..453 score: 7.596coord: 174..208 score: 6.04coord: 349..383 score: 11.224coord: 384..418 score: 12.496coord: 314..348 score: 13.033coord: 245..275 score: 5.064coord: 279..313 score: 8
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 212..440 score: 2.
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 155..527 score: 4.0E
None	No IPR available	PANTHER	PTHR24015:SF488	SUBFAMILY NOT NAMED	coord: 155..527 score: 4.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G002710	CmaCh13G002640	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G002710	Cla001852	Watermelon (97103) v1	cmowmB191
CmoCh13G002710	Csa1G132170	Cucumber (Chinese Long) v2	cmocuB188
CmoCh13G002710	ClCG01G013900	Watermelon (Charleston Gray)	cmowcgB172
CmoCh13G002710	CSPI01G13950	Wild cucumber (PI 183967)	cmocpiB192
CmoCh13G002710	Lsi03G000590	Bottle gourd (USVL1VR-Ls)	cmolsiB203
CmoCh13G002710	Cp4.1LG20g07430	Cucurbita pepo (Zucchini)	cmocpeB203
CmoCh13G002710	Cla97C01G012870	Watermelon (97103) v2	cmowmbB193
CmoCh13G002710	Bhi08G000123	Wax gourd	cmowgoB0259

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G002710	Cucurbita moschata (Rifu)	cmocmoB135
CmoCh13G002710	Cucumber (Gy14) v1	cgycmoB0594
CmoCh13G002710	Cucurbita maxima (Rimu)	cmacmoB179
CmoCh13G002710	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G002710	Cucurbita pepo (Zucchini)	cmocpeB216
CmoCh13G002710	Cucumber (Gy14) v2	cgybcmoB057
CmoCh13G002710	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G002710	Silver-seed gourd	carcmoB0234
CmoCh13G002710	Cucumber (Chinese Long) v3	cmocucB0221