Cla97C01G012870 (gene) Watermelon (97103) v2

Overview
NameCla97C01G012870
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPentatricopeptide repeat
LocationCla97Chr01 : 26522357 .. 26524340 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCGAGCCACTTTTCCATTTACTTGCTTTTTCGATTTCAGTTCTGGCAGGTCATGTCAGTTTACGAACTTGCTATCTACCAGGAATCTTCTGTATTACTCGTACGCTGTAAGTTGAACCTTTAAATTTCTTCTGTTCTTGTTTGTTTCTGTAATACTCCTCTGGAAAATTGATTGTTTTGCCACGAACTGTGTTTGTTATCAATTAGATTCGACCCAAAAATTCATTCATTTCTCTAGGCGTGCTGTCATTATGAAAACTATAGTTTTCCGATTGGTTTTGAATTGAGCATTATCTGAACGTTTATGCCTTTGCGGTGTCCACACAGTTTTGTATTACTGGGGTGGTTTGGAGGTTTCTTTTCATTCATTTTACTCCCGGTTTTGTTGTATTTCTAAGTTAGTGCCCAAGTTGGAGTAGTAGTCGTAGTGATGATAAGGATATCCTTTTAGAATTTTCGATTAAGTGAAAATTGTGGGGTTAGAAATTTGTTTTTACACTTTTATATGACTATCATGTTTAGCAGTTATTGGTCATACCATTTAGGATTTATGAACTGTTTTTAATTCATTATTTGAGGCTTATACCTCATATTGTCAGGATTACGCCTCGCCTCTCCAAGAGGAAAAAAAAAAAAGGCTCAAAGGCCGTTTTTAATCTTTTAGAATATTGATTAGAGTTCATGGCAATAGAGCTTTTACTTCTGGCCTGTTGATGATGCAATCAACGCTGCTGAGGATTGTCCGTAGATGTTGTTGATAGGTGGAATCCAGCTTATTTCTCAATGTCTCTTCTAGGTTTCCATTACCAAAACTTTGTATCTCTTGCTTTAAAGAAAATCTGTCATTGGCAGACTTTGCTATAGATCGTCTTTTTCTAGAGCTTATAACCAATGTTAACGTAATTTACCAAATTTTTGTTCCTTCATATCAATTATTGGAAACCTGGATTCTGGAAGCCCAATAGTCAATTAGTAACTTATCGATGCCATTTATCTTAATTCAACTTAGGTTAATAACTACATCTTATACACCTTCACATCTTACCTGCATTCTGCATATATCTTTTAGATGATTTGCGAATTAAATATTTAATTTTGTCTTTACATGTCTAATACAGAATAGCATTGCATGTATCCCTGTTAGTAACCCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCTACTACAAATATATCTCCTGATGAAGTGAAAGTAGGGGATGAAGTCTTGAATCAGATCATTACCCCAAGGGAAAATGTCTCAAGGTGTAGCCATGAAACCTTTGATGCTTGCATTGATAAGATGTGTCAATCTGGAAATGTTGCAGCTGCTGCTCAACTTAAATCTTTGTGCGATAGGAAAATATCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTTCTTGCAGCAAGTGAAAGGGGAGACATTACCCTTTTATGTCAAGTTTTTAAAGATTACCTGGTTTCCTGTAAATCATTGAGTTCAACCGCTTACATGAATTTTGCCAAGGCCTTTACCAGGACAAATGATTGTAGCAAGCTACTGGAATTTGTCAAAGAAATAATTGAGATGAGCTTTCCAAACTGCATGGTTATAAACAGAATTATATTTGCCTTCTCCAAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATGTAGACCAGATTTGTATACGTATAACATCATTTTGGATATGCTAGGCCGTGCAGGTCGCTTGAATGAACTTCTTCATATATTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATTGTGTCCTATAATACATTGATAAATAGCTTAAGGAAGGTGGGTAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAGAGTGGAACCTGATTTGCTTACTTATACTGCTTTGATAGAGAGTTTTGGTCGATCTGGAAATATTGAGGAAGCTTTGA

mRNA sequence

ATGGTTCGAGCCACTTTTCCATTTACTTGCTTTTTCGATTTCAGTTCTGGCAGGTCATGTCAGTTTACGAACTTGCTATCTACCAGGAATCTTCTGTATTACTCGTACGCTAATAGCATTGCATGTATCCCTGTTAGTAACCCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCTACTACAAATATATCTCCTGATGAAGTGAAAGTAGGGGATGAAGTCTTGAATCAGATCATTACCCCAAGGGAAAATGTCTCAAGGTGTAGCCATGAAACCTTTGATGCTTGCATTGATAAGATGTGTCAATCTGGAAATGTTGCAGCTGCTGCTCAACTTAAATCTTTGTGCGATAGGAAAATATCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTTCTTGCAGCAAGTGAAAGGGGAGACATTACCCTTTTATGTCAAGTTTTTAAAGATTACCTGGTTTCCTGTAAATCATTGAGTTCAACCGCTTACATGAATTTTGCCAAGGCCTTTACCAGGACAAATGATTGTAGCAAGCTACTGGAATTTGTCAAAGAAATAATTGAGATGAGCTTTCCAAACTGCATGGTTATAAACAGAATTATATTTGCCTTCTCCAAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATGTAGACCAGATTTGTATACGTATAACATCATTTTGGATATGCTAGGCCGTGCAGGTCGCTTGAATGAACTTCTTCATATATTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATTGTGTCCTATAATACATTGATAAATAGCTTAAGGAAGAGAGTTTTGGTCGATCTGGAAATATTGAGGAAGCTTTGA

Coding sequence (CDS)

ATGGTTCGAGCCACTTTTCCATTTACTTGCTTTTTCGATTTCAGTTCTGGCAGGTCATGTCAGTTTACGAACTTGCTATCTACCAGGAATCTTCTGTATTACTCGTACGCTAATAGCATTGCATGTATCCCTGTTAGTAACCCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCTACTACAAATATATCTCCTGATGAAGTGAAAGTAGGGGATGAAGTCTTGAATCAGATCATTACCCCAAGGGAAAATGTCTCAAGGTGTAGCCATGAAACCTTTGATGCTTGCATTGATAAGATGTGTCAATCTGGAAATGTTGCAGCTGCTGCTCAACTTAAATCTTTGTGCGATAGGAAAATATCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTTCTTGCAGCAAGTGAAAGGGGAGACATTACCCTTTTATGTCAAGTTTTTAAAGATTACCTGGTTTCCTGTAAATCATTGAGTTCAACCGCTTACATGAATTTTGCCAAGGCCTTTACCAGGACAAATGATTGTAGCAAGCTACTGGAATTTGTCAAAGAAATAATTGAGATGAGCTTTCCAAACTGCATGGTTATAAACAGAATTATATTTGCCTTCTCCAAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATGTAGACCAGATTTGTATACGTATAACATCATTTTGGATATGCTAGGCCGTGCAGGTCGCTTGAATGAACTTCTTCATATATTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATTGTGTCCTATAATACATTGATAAATAGCTTAAGGAAGAGAGTTTTGGTCGATCTGGAAATATTGAGGAAGCTTTGA

Protein sequence

MVRATFPFTCFFDFSSGRSCQFTNLLSTRNLLYYSYANSIACIPVSNPQIWPLYAIKCLSHQSSTTNISPDEVKVGDEVLNQIITPRENVSRCSHETFDACIDKMCQSGNVAAAAQLKSLCDRKISLSSSKAYDMVFLAASERGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEIIEMSFPNCMVINRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKEDGIAPDIVSYNTLINSLRKRVLVDLEILRKL
Homology
[Close]
BLAST of Cla97C01G012870 vs. NCBI nr
Match: XP_022970322.1 (pentatricopeptide repeat-containing protein At1g11900 [Cucurbita maxima])

HSP 1 Score: 321.2 bits (822), Expect = 3.6e-84
Identity = 168/209 (80.38%), Postives = 180/209 (86.12%), Query Frame = 0 

Query: 24  NLLSTRNLLYYSYANSIACIPVSNPQIWPLYAIKCLSHQSSTTNISPDEVKVGDEVLNQI 83
           +LLS RN+L+YSY NSI  IPV NPQ W LYAI+   HQSST NISPDE KV DEVLNQI
Sbjct: 8   SLLSARNVLHYSYTNSITSIPVGNPQNWLLYAIRRFGHQSSTNNISPDEEKVKDEVLNQI 67

Query: 84  ITPRENVSRCSHETFDACIDKMCQSGNVAAAAQ-LKSLCDRKISLSSSKAYDMVFLAASE 143
              REN SRCSHETFD CIDKMC+SGN+ AAAQ LKSLCDRKISLSSSKAYDMV LAASE
Sbjct: 68  TATRENASRCSHETFDVCIDKMCRSGNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASE 127

Query: 144 RGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEIIEMSFPNCMVI 203
           RGD TLLCQVFKD LVS K LSST+YMNFAKAF RT+D SKLLE+VKEIIEM+FPN +VI
Sbjct: 128 RGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVI 187

Query: 204 NRIIFAFSKCREIDKALQIFNQMKLLSCR 232
           NRIIFAFS+CREIDKALQIFNQMKLLS R
Sbjct: 188 NRIIFAFSECREIDKALQIFNQMKLLSYR 216

[Close]
BLAST of Cla97C01G012870 vs. NCBI nr
Match: XP_008462480.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 1.0e-83
Identity = 163/206 (79.13%), Postives = 178/206 (86.41%), Query Frame = 0 

Query: 29  RNLLYYSYANSIACIPVSNPQIWPLYAIKCLSHQSSTTNISPDEVKVGDEVLNQIITPRE 88
           RNLL+YSYAN IA IPV N QIWPLYAIKC SHQSS+TNISPDEVKVGDEVLNQII PRE
Sbjct: 10  RNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQIIAPRE 69

Query: 89  NVSRCSHETFDACIDKMCQSGNVAAAAQ-LKSLCDRKISLSSSKAYDMVFLAASERGDIT 148
           N S CSHE  DACIDK+C  G++AAAAQ LKSLC+ KISL+SSKAYDMV LAASERGD  
Sbjct: 70  NASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAASERGDTP 129

Query: 149 LLCQVFKDYLVSCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEIIEMSFPNCMVINRIIF 208
           LLCQVFK  +VSCKSLSS +YM+FA+AFT+TND SKLLE VKEI+E++  NC VINRIIF
Sbjct: 130 LLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRPD 234
           AFSKCREIDKA QIFNQMK LSC PD
Sbjct: 190 AFSKCREIDKAFQIFNQMKCLSCTPD 215

[Close]
BLAST of Cla97C01G012870 vs. NCBI nr
Match: XP_008462492.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 1.0e-83
Identity = 163/206 (79.13%), Postives = 178/206 (86.41%), Query Frame = 0 

Query: 29  RNLLYYSYANSIACIPVSNPQIWPLYAIKCLSHQSSTTNISPDEVKVGDEVLNQIITPRE 88
           RNLL+YSYAN IA IPV N QIWPLYAIKC SHQSS+TNISPDEVKVGDEVLNQII PRE
Sbjct: 10  RNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQIIAPRE 69

Query: 89  NVSRCSHETFDACIDKMCQSGNVAAAAQ-LKSLCDRKISLSSSKAYDMVFLAASERGDIT 148
           N S CSHE  DACIDK+C  G++AAAAQ LKSLC+ KISL+SSKAYDMV LAASERGD  
Sbjct: 70  NASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAASERGDTP 129

Query: 149 LLCQVFKDYLVSCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEIIEMSFPNCMVINRIIF 208
           LLCQVFK  +VSCKSLSS +YM+FA+AFT+TND SKLLE VKEI+E++  NC VINRIIF
Sbjct: 130 LLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRPD 234
           AFSKCREIDKA QIFNQMK LSC PD
Sbjct: 190 AFSKCREIDKAFQIFNQMKCLSCTPD 215

[Close]
BLAST of Cla97C01G012870 vs. NCBI nr
Match: XP_023518970.1 (pentatricopeptide repeat-containing protein At1g11900 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.5 bits (802), Expect = 7.4e-82
Identity = 165/209 (78.95%), Postives = 177/209 (84.69%), Query Frame = 0 

Query: 24  NLLSTRNLLYYSYANSIACIPVSNPQIWPLYAIKCLSHQSSTTNISPDEVKVGDEVLNQI 83
           +LLS RN+L+YSY NSI  IPV NPQ W LYAI+   HQ STTNISPDE KV DEVLNQ 
Sbjct: 8   SLLSARNVLHYSYTNSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQN 67

Query: 84  ITPRENVSRCSHETFDACIDKMCQSGNVAAAAQ-LKSLCDRKISLSSSKAYDMVFLAASE 143
              REN S CSHETFD CIDKMC+S N+ AAAQ LKSLCDRKISLSSSKAYDMV LAASE
Sbjct: 68  TVTRENASMCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASE 127

Query: 144 RGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEIIEMSFPNCMVI 203
           RGD TLLCQVFKD LVS K LSST+YMNFAKAF RT+D SKLLE+VKEIIEM+FPN +VI
Sbjct: 128 RGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVI 187

Query: 204 NRIIFAFSKCREIDKALQIFNQMKLLSCR 232
           NRIIFAFS+CREIDKALQIFNQMKLLS R
Sbjct: 188 NRIIFAFSECREIDKALQIFNQMKLLSYR 216

[Close]
BLAST of Cla97C01G012870 vs. NCBI nr
Match: XP_022964991.1 (pentatricopeptide repeat-containing protein At1g11900-like [Cucurbita moschata])

HSP 1 Score: 312.8 bits (800), Expect = 1.3e-81
Identity = 164/208 (78.85%), Postives = 176/208 (84.62%), Query Frame = 0 

Query: 25  LLSTRNLLYYSYANSIACIPVSNPQIWPLYAIKCLSHQSSTTNISPDEVKVGDEVLNQII 84
           LLS RN+L+YSY NSI  +PV NPQ W LYAI+   HQ STTNISPDE KV DEVLNQI 
Sbjct: 9   LLSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVEDEVLNQIT 68

Query: 85  TPRENVSRCSHETFDACIDKMCQSGNVAAAAQ-LKSLCDRKISLSSSKAYDMVFLAASER 144
             REN S CSHETFD CIDKMC+S N+ AAAQ LKS CDRKISLSSSKAYDMV LAASER
Sbjct: 69  ATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAASER 128

Query: 145 GDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEIIEMSFPNCMVIN 204
           GD TLLCQVFKD LVS K LSST+YMNFAKAF RT+D SKLLE+VKEIIEM+FPN +VIN
Sbjct: 129 GDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVIN 188

Query: 205 RIIFAFSKCREIDKALQIFNQMKLLSCR 232
           RIIFAFS+CREIDKALQIFNQMKLLS R
Sbjct: 189 RIIFAFSECREIDKALQIFNQMKLLSYR 216

[Close]
BLAST of Cla97C01G012870 vs. TrEMBL
Match: tr|A0A1S3CIJ8|A0A1S3CIJ8_CUCME (pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 6.8e-84
Identity = 163/206 (79.13%), Postives = 178/206 (86.41%), Query Frame = 0 

Query: 29  RNLLYYSYANSIACIPVSNPQIWPLYAIKCLSHQSSTTNISPDEVKVGDEVLNQIITPRE 88
           RNLL+YSYAN IA IPV N QIWPLYAIKC SHQSS+TNISPDEVKVGDEVLNQII PRE
Sbjct: 10  RNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQIIAPRE 69

Query: 89  NVSRCSHETFDACIDKMCQSGNVAAAAQ-LKSLCDRKISLSSSKAYDMVFLAASERGDIT 148
           N S CSHE  DACIDK+C  G++AAAAQ LKSLC+ KISL+SSKAYDMV LAASERGD  
Sbjct: 70  NASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAASERGDTP 129

Query: 149 LLCQVFKDYLVSCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEIIEMSFPNCMVINRIIF 208
           LLCQVFK  +VSCKSLSS +YM+FA+AFT+TND SKLLE VKEI+E++  NC VINRIIF
Sbjct: 130 LLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRPD 234
           AFSKCREIDKA QIFNQMK LSC PD
Sbjct: 190 AFSKCREIDKAFQIFNQMKCLSCTPD 215

[Close]
BLAST of Cla97C01G012870 vs. TrEMBL
Match: tr|A0A1S3CH34|A0A1S3CH34_CUCME (pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 6.8e-84
Identity = 163/206 (79.13%), Postives = 178/206 (86.41%), Query Frame = 0 

Query: 29  RNLLYYSYANSIACIPVSNPQIWPLYAIKCLSHQSSTTNISPDEVKVGDEVLNQIITPRE 88
           RNLL+YSYAN IA IPV N QIWPLYAIKC SHQSS+TNISPDEVKVGDEVLNQII PRE
Sbjct: 10  RNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQIIAPRE 69

Query: 89  NVSRCSHETFDACIDKMCQSGNVAAAAQ-LKSLCDRKISLSSSKAYDMVFLAASERGDIT 148
           N S CSHE  DACIDK+C  G++AAAAQ LKSLC+ KISL+SSKAYDMV LAASERGD  
Sbjct: 70  NASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAASERGDTP 129

Query: 149 LLCQVFKDYLVSCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEIIEMSFPNCMVINRIIF 208
           LLCQVFK  +VSCKSLSS +YM+FA+AFT+TND SKLLE VKEI+E++  NC VINRIIF
Sbjct: 130 LLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRPD 234
           AFSKCREIDKA QIFNQMK LSC PD
Sbjct: 190 AFSKCREIDKAFQIFNQMKCLSCTPD 215

[Close]
BLAST of Cla97C01G012870 vs. TrEMBL
Match: tr|A0A0A0LXZ6|A0A0A0LXZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132170 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.5e-72
Identity = 148/206 (71.84%), Postives = 168/206 (81.55%), Query Frame = 0 

Query: 29  RNLLYYSYANSIACIPVSNPQIWPLYAIKCLSHQSSTTNISPDEVKVGDEVLNQIITPRE 88
           RN L+YSYAN IA  PV N QIWPLYAIKCLSHQSS T I P+EVKVGDE LNQII P E
Sbjct: 10  RNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTE 69

Query: 89  NVSRCSHETFDACIDKMCQSGNVAAAAQ-LKSLCDRKISLSSSKAYDMVFLAASERGDIT 148
           N S+C HE  DACIDK+C+ G++AAAA  LKSLC+ K+   SS+AYDMV LAASERGD  
Sbjct: 70  NASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKV-FKSSEAYDMVLLAASERGDTP 129

Query: 149 LLCQVFKDYLVSCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEIIEMSFPNCMVINRIIF 208
           LLC+VFK  L+SCKSLSS +YM+FA+AFT+TND SKLLE VKEIIE++   C+VINRIIF
Sbjct: 130 LLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQKCIVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRPD 234
           AFS+ REIDKA QIFNQMK LSC PD
Sbjct: 190 AFSERREIDKAFQIFNQMKCLSCTPD 213

[Close]
BLAST of Cla97C01G012870 vs. TrEMBL
Match: tr|E0CU43|E0CU43_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g00220 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.5e-35
Identity = 106/239 (44.35%), Postives = 149/239 (62.34%), Query Frame = 0 

Query: 1   MVRATFPFTCFFDFSSGRSCQFTNLLSTRNLLYYSYANSIACIPVSNPQIWPLYAI---K 60
           M+  + PFT  F     RS   +NL        + Y+N I+ IP     I P +AI    
Sbjct: 1   MIALSRPFTKIFPSIFFRSFH-SNLGPIAATRRHRYSNFISAIPDDVSWILPFFAILSKS 60

Query: 61  CLSHQSSTTNISPDEVKVGDEVLNQIITPRENVSRCSHETF-DACIDKMCQSGNVAAAAQ 120
             S+QS  T  SPDE  V DE LN+I++  E   + S E      IDK+ ++GN +AAA+
Sbjct: 61  IGSYQSLATEASPDEEVVPDEFLNEILSDIERSPKFSSEKLCTTYIDKLLKAGNPSAAAR 120

Query: 121 -LKSLCDRKISLSSSKAYDMVFLAASERGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAF 180
            ++SL D+ I LS + AY+++ +AASE   I  L Q+FKD LVS K LSST+Y N AK F
Sbjct: 121 FMQSLHDKHIFLSPN-AYNLLLVAASEANAIDFLSQIFKDLLVSNKPLSSTSYFNVAKVF 180

Query: 181 TRTNDCSKLLEFVKEIIEMSFP-NCMVINRIIFAFSKCREIDKALQIFNQMKLLSCRPD 234
           T+T+D S LL+FV+E+ E++FP N  ++NRII AF++CR+I+K+L IF+ MK L C+PD
Sbjct: 181 TKTDD-SVLLKFVREVSELTFPRNATILNRIIHAFAECRQIEKSLIIFDHMKSLKCKPD 236

[Close]
BLAST of Cla97C01G012870 vs. TrEMBL
Match: tr|A0A2P4JMC8|A0A2P4JMC8_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_76968 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 99/212 (46.70%), Postives = 132/212 (62.26%), Query Frame = 0 

Query: 24  NLLSTRNLLYYSYANSIACIPVSNPQIWPLYAI------KCLSHQSSTTNISPDEVKVGD 83
           +++ +R  +YY   N IA I V  P   P + I      KC   Q   T  SP++ +V D
Sbjct: 28  SIIQSRLHIYY---NCIASITVGFP--LPFFTIIRNFIGKC---QFPATQASPNKEEVTD 87

Query: 84  EVLNQIITPRENVSRCSHETFDACIDKMCQSGNVAAAAQLKSLCDRKISLSSSKAYDMVF 143
           EVLNQI+T  EN  R + +   A  DK C++GN++AAA+L      K    S KAY ++ 
Sbjct: 88  EVLNQILTSVENAPRPNTKICTAYADKFCRAGNLSAAARLLQSLHHKHIFLSPKAYKILL 147

Query: 144 LAASERGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEIIEMSFP 203
            AASER DI LL QVFKD L+S   LSST Y + AKAFT+TND  +LL FVK++  ++ P
Sbjct: 148 RAASERHDIDLLSQVFKDLLISNGVLSSTCYADVAKAFTKTNDGIQLLRFVKKVSALTSP 207

Query: 204 NCMVINRIIFAFSKCREIDKALQIFNQMKLLS 230
           +  V+NRIIFAF+KC +IDKAL I++Q K LS
Sbjct: 208 SATVVNRIIFAFAKCGQIDKALLIYDQFKSLS 231

[Close]
BLAST of Cla97C01G012870 vs. Swiss-Prot
Match: sp|Q5BIV3|PPR35_ARATH (Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana OX=3702 GN=At1g11900 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-12
Identity = 51/139 (36.69%), Postives = 82/139 (58.99%), Query Frame = 0 

Query: 77  DEVLNQIITPRENVSR-CSHETFDACIDKMCQSGNVAAAAQ-LKSLCDRKISLSSSKAYD 136
           +E+L +I+   E+ S+  S   +   ++K  + GN++ A   L+SL ++ I L  S  + 
Sbjct: 51  EELLKKIVNHSESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNICLPIS-VFK 110

Query: 137 MVFLAASERGDITLLCQVFKDYLV--SCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEII 196
            +  AA E  D+ L C+VF++ L+    + LSS  Y+N A+AF  T+DC+ L   +KEI 
Sbjct: 111 NLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFINTDDCTYLTSLLKEIS 170

Query: 197 EMSFP-NCMVINRIIFAFS 211
           E S P   +V+NRIIFAF+
Sbjct: 171 ESSLPYRLIVMNRIIFAFA 188

[Close]
BLAST of Cla97C01G012870 vs. TAIR10
Match: AT1G11900.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-13
Identity = 51/139 (36.69%), Postives = 82/139 (58.99%), Query Frame = 0 

Query: 77  DEVLNQIITPRENVSR-CSHETFDACIDKMCQSGNVAAAAQ-LKSLCDRKISLSSSKAYD 136
           +E+L +I+   E+ S+  S   +   ++K  + GN++ A   L+SL ++ I L  S  + 
Sbjct: 51  EELLKKIVNHSESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNICLPIS-VFK 110

Query: 137 MVFLAASERGDITLLCQVFKDYLV--SCKSLSSTAYMNFAKAFTRTNDCSKLLEFVKEII 196
            +  AA E  D+ L C+VF++ L+    + LSS  Y+N A+AF  T+DC+ L   +KEI 
Sbjct: 111 NLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFINTDDCTYLTSLLKEIS 170

Query: 197 EMSFP-NCMVINRIIFAFS 211
           E S P   +V+NRIIFAF+
Sbjct: 171 ESSLPYRLIVMNRIIFAFA 188

The following BLAST results are available for this feature:
BLAST of Cla97C01G012870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022970322.13.6e-8480.38pentatricopeptide repeat-containing protein At1g11900 [Cucurbita maxima][more]
XP_008462480.11.0e-8379.13PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc... [more]
XP_008462492.11.0e-8379.13PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc... [more]
XP_023518970.17.4e-8278.95pentatricopeptide repeat-containing protein At1g11900 [Cucurbita pepo subsp. pep... [more]
XP_022964991.11.3e-8178.85pentatricopeptide repeat-containing protein At1g11900-like [Cucurbita moschata][more]
BLAST of Cla97C01G012870 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CIJ8|A0A1S3CIJ8_CUCME6.8e-8479.13pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo... [more]
tr|A0A1S3CH34|A0A1S3CH34_CUCME6.8e-8479.13pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Cucumis melo... [more]
tr|A0A0A0LXZ6|A0A0A0LXZ6_CUCSA3.5e-7271.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132170 PE=4 SV=1[more]
tr|E0CU43|E0CU43_VITVI4.5e-3544.35Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g00220 PE=4 SV=... [more]
tr|A0A2P4JMC8|A0A2P4JMC8_QUESU1.0e-3446.70Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_7... [more]
BLAST of Cla97C01G012870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q5BIV3|PPR35_ARATH3.2e-1236.69Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana OX... [more]
BLAST of Cla97C01G012870 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11900.11.8e-1336.69Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G012870.1Cla97C01G012870.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 197..244
e-value: 6.0E-11
score: 42.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 235..269
e-value: 1.0E-8
score: 32.8
coord: 202..233
e-value: 1.5E-5
score: 22.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 247..278
e-value: 1.2E-5
score: 25.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 233..267
score: 12.277
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 198..232
score: 9.482
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 268..293
score: 5.722
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 158..289
e-value: 7.7E-30
score: 105.6
NoneNo IPR availablePANTHERPTHR24015:SF488SUBFAMILY NOT NAMEDcoord: 88..282
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 88..282

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G012870Cla001852Watermelon (97103) v1wmwmbB248
Cla97C01G012870Csa1G132170Cucumber (Chinese Long) v2cuwmbB002
Cla97C01G012870ClCG01G013900Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G012870CSPI01G13950Wild cucumber (PI 183967)cpiwmbB002
Cla97C01G012870CmaCh13G002640Cucurbita maxima (Rimu)cmawmbB209
Cla97C01G012870CmoCh13G002710Cucurbita moschata (Rifu)cmowmbB193
Cla97C01G012870Lsi03G000590Bottle gourd (USVL1VR-Ls)lsiwmbB216
Cla97C01G012870Bhi08G000123Wax gourdwgowmbB461
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G012870Silver-seed gourdcarwmbB0173
Cla97C01G012870Cucumber (Gy14) v2cgybwmbB003
Cla97C01G012870Cucumber (Gy14) v1cgywmbB374
Cla97C01G012870Cucurbita maxima (Rimu)cmawmbB163
Cla97C01G012870Cucurbita moschata (Rifu)cmowmbB149
Cla97C01G012870Cucumber (Chinese Long) v3cucwmbB002
Cla97C01G012870Melon (DHL92) v3.6.1medwmbB127
Cla97C01G012870Melon (DHL92) v3.5.1mewmbB134