CsGy1G013950.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G013950.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pentatricopeptide repeat-containing protein isoform X2
Location	Chr1 : 9585346 .. 9588003 (-)
Sequence length	2179

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTTTCAACCGTTCAAATAAATTGATTTCTCTTCCTCTTCTTCCTTTGCTTCAGCCGAACTCCGCTTCCCTCACCGTCTTCTCTCTTCACGTCTCACCCGCCGCGTCTCCTAGCCGCCCGTTCCTCCTCGCGTTGCCGCTTATCTGACGCCCAGACGAGCGGAGCCGACGTCTCCTTCGCTGCAGCTGGAGTTCGTCGCGCCGCCGTGTGGTTGTTTCACACCCGTCGTCCGAAGCCTTCGCCGCTGCCACTGCGTTGCCCATCTGCCGCCGCCGGTCCCGTCAACCACTGAAGTTAGGTACAGAGTTTGGGAATGGGTTTGGTAGTAATCTTAGCATTCATCTTTATCGAGTTAGGGCTGATTTCACCATAGGCAAAGGCTGAGCGGAAAAGCAAGATGCAAACCCTGGAATTTTGTAACGAAGAAGAATCGCAAAAAGCAGTGTCGTGGTTTTAGGGTTTTGGGTTTAGAGTGCTTTGGCCTTCTTCCACATTTCAGCTTATGGTTCGAACCACTTCCCCATTTACTTGCATTTTCAATTTCAGTTCTGGCCGTTTATGTCGCTTTACCATCTTGCTATCCATAGGAATTTTCTGCATTACTCGTATGCTGTAAGTTAAACCTCCAAACTTCTTCTCTTTTTGTTTTCTTTTTTGTGAAATAATGCTCTGGGAAATGCTTAAATGCTATTTTTGTGGCAAGCAAAGAGTGGTGGTATAGAAAATTTTTCGGACATACTAGAAATTTTCTGCTCTACTACGAAAACTTTTTGGGTCTCTTTAAGTAAATCTATCAGTGGTAGGATTTGCTTTAGATTATGTTTTTCTAGAGCTTGTAGCCAATGTTTATTCACCAACTTAATTACAAAAATTTTGTTCCTTAAACATCAATTATTGGGAATTCGGATTTTGGAAGCTCAGTAGTTGATTAATAACTCATCAATACCATTTATCTTTCGTAATTCAACTTAGGTTAAGAACAATATCTTATCCACATTCTCATCATACCTGTATATATCTTTTAGATGATTACACATGACTTATGCCTTACGAATTAAATATTTAATTTGGCCTCTACATGTCTAATACAGAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAACGGAAAATGCCTCAAACTGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAGTGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCGGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGGTGGGTCGACTAGATATATCCGTGATTTACTTCAGGGAAATGGTTGCAATGGGAATTGAACCTGATTTGCTTACTTATACAGCTTTGATAGAGAGTTATGGTCGATTTGGAAACCTCGAAGAAGCTTTGACACTCCTCAAAGAGATGAAGCTTAATAACATCCGTCCTTCAAGCTATATTTACAGGTCCCTTATCAGAAATTCAATGACGATGAAGAAGGTGGAATTGGCTACGGACCTTCTCAATGAAATGAAATTAAGTAAATCAGAACTTGCTCGTCCAGAGGATTTCAAACGAAGAAAAATGTAACCAATTGAATAGTTTCACAGCAGACTTTGAGATTGATAAGCATGTGAATGTCATGGCTTTAATCTTCAAAGTGAGATCTGCCAGAGTGACTGCATGCATAGGTAATATTTCTACCTATTTATCTACTTCTCTTATGTCTGACTCGAAATACACAAATTGTTGTCATAAGTTGCAATAGAAGTCTTGTGACGAATTTTGGAGATTCATTTTAGGACCAATATACAAAAACGTAAGATGAATATTTGGTTTGTTTAATTGTCTGTTATGTAAGGTGCTGTGTGTAACTAACGTTTGTTGGGAGATATAACTCAAATCGTGGAGCATTTTTAGAATATTTGCAAGAACTTAGAAAAGATGTAATTCAAGAAATTTGCTATGAGGAAGAAAACTATGAACAAAAATCAGGGGCTCACAAAATTTCAAAAAAAGACTTTAACACAATCAAAATTCGACACTGAAGTGAAAATCATCGGTGAAAACAAGCATCTAGGGATTCAATTTGAATAATATGATAAGTTGATTAAAGA

mRNA sequence

TTCCTTTCAACCGTTCAAATAAATTGATTTCTCTTCCTCTTCTTCCTTTGCTTCAGCCGAACTCCGCTTCCCTCACCGTCTTCTCTCTTCACGTCTCACCCGCCGCGTCTCCTAGCCGCCCGTTCCTCCTCGCGTTGCCGCTTATCTGACGCCCAGACGAGCGGAGCCGACGTCTCCTTCGCTGCAGCTGGAGTTCGTCGCGCCGCCGTGTGGTTGTTTCACACCCGTCGTCCGAAGCCTTCGCCGCTGCCACTGCGTTGCCCATCTGCCGCCGCCGGTCCCGTCAACCACTGAAGTTAGGTACAGAGTTTGGGAATGGGTTTGGTAGTAATCTTAGCATTCATCTTTATCGAGTTAGGGCTGATTTCACCATAGGCAAAGGCTGAGCGGAAAAGCAAGATGCAAACCCTGGAATTTTGTAACGAAGAAGAATCGCAAAAAGCAGTGTCGTGGTTTTAGGGTTTTGGGTTTAGAGTGCTTTGGCCTTCTTCCACATTTCAGCTTATGGTTCGAACCACTTCCCCATTTACTTGCATTTTCAATTTCAGTTCTGGCCGTTTATGTCGCTTTACCATCTTGCTATCCATAGGAATTTTCTGCATTACTCGTATGCTAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAACGGAAAATGCCTCAAACTGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAGTGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCGGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGGTGGGTCGACTAGATATATCCGTGATTTACTTCAGGGAAATGGTTGCAATGGGAATTGAACCTGATTTGCTTACTTATACAGCTTTGATAGAGAGTTATGGTCGATTTGGAAACCTCGAAGAAGCTTTGACACTCCTCAAAGAGATGAAGCTTAATAACATCCGTCCTTCAAGCTATATTTACAGGTCCCTTATCAGAAATTCAATGACGATGAAGAAGGTGGAATTGGCTACGGACCTTCTCAATGAAATGAAATTAAGTAAATCAGAACTTGCTCGTCCAGAGGATTTCAAACGAAGAAAAATGTAACCAATTGAATAGTTTCACAGCAGACTTTGAGATTGATAAGCATGTGAATGTCATGGCTTTAATCTTCAAAGTGAGATCTGCCAGAGTGACTGCATGCATAGGTAATATTTCTACCTATTTATCTACTTCTCTTATGTCTGACTCGAAATACACAAATTGTTGTCATAAGTTGCAATAGAAGTCTTGTGACGAATTTTGGAGATTCATTTTAGGACCAATATACAAAAACGTAAGATGAATATTTGGTTTGTTTAATTGTCTGTTATGTAAGGTGCTGTGTGTAACTAACGTTTGTTGGGAGATATAACTCAAATCGTGGAGCATTTTTAGAATATTTGCAAGAACTTAGAAAAGATGTAATTCAAGAAATTTGCTATGAGGAAGAAAACTATGAACAAAAATCAGGGGCTCACAAAATTTCAAAAAAAGACTTTAACACAATCAAAATTCGACACTGAAGTGAAAATCATCGGTGAAAACAAGCATCTAGGGATTCAATTTGAATAATATGATAAGTTGATTAAAGA

Coding sequence (CDS)

ATGTCGCTTTACCATCTTGCTATCCATAGGAATTTTCTGCATTACTCGTATGCTAATAGAATTGCATCTGCCCCAGTTGGTAACTCTCAAATCTGGCCGCTTTATGCCATCAAATGCCTTAGCCATCAGTCATCCGGTACAAAAATCTTTCCTAATGAAGTGAAAGTGGGGGATGAAGACTTGAATCAGATTATTGCTCCAACGGAAAATGCCTCAAACTGTATCCATGAGATCATTGATGCTTGCATTGATAAGATTTGTCGACTGGGACATCTTGCAGCTGCAGCTCATTTACTTAAATCATTGTGCAGTGAGAAAGTATTTAAATCCTCGGAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGGGGAGACACTCCTCTTTTATGTGAAGTTTTTAAAGTTGCCCTACTTTCATGTAAATCACTGAGTTCGGCTTCTTACATGAGTTTTGCCAGGGCCTTTACCAAGACAAATGATAGCAAGCTGTTGGAATGTGTCAAAGAAATAATTGAGATTACCTCTCAGAAGTGCATAGTTATAAACAGAATTATCTTTGCCTTCTCCGAGCGTAGGGAGATTGATAAAGCCTTTCAAATATTTAATCAGATGAAGTGTCTGTCATGTACACCAGATTTGTATACATACAACATCATTTTGGACATGGTAGGTCGTGCAGGTCGCGTGGATGAAATTCTTCATATATTTGTTTCCATGAAAGAAGAAGGCATAGCCCCAGATATTGTGTCTTATAATACATTGATAAATAGCTTAAGAAAGGTGGGTCGACTAGATATATCCGTGATTTACTTCAGGGAAATGGTTGCAATGGGAATTGAACCTGATTTGCTTACTTATACAGCTTTGATAGAGAGTTATGGTCGATTTGGAAACCTCGAAGAAGCTTTGACACTCCTCAAAGAGATGAAGCTTAATAACATCCGTCCTTCAAGCTATATTTACAGGTCCCTTATCAGAAATTCAATGACGATGAAGAAGGTGGAATTGGCTACGGACCTTCTCAATGAAATGAAATTAAGTAAATCAGAACTTGCTCGTCCAGAGGATTTCAAACGAAGAAAAATGTAA

Protein sequence

MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMKLNNIRPSSYIYRSLIRNSMTMKKVELATDLLNEMKLSKSELARPEDFKRRKM

Homology

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BLAST of CsGy1G013950.1 vs. NCBI nr
Match: XP_011654081.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis sativus] >KGN64856.1 hypothetical protein Csa_1G132170 [Cucumis sativus])

HSP 1 Score: 441.0 bits (1133), Expect = 3.8e-120
Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLA 120
           LNQIIAPTENAS CIHEIIDACIDKICRLGHLAAAAHLLKSLC+EKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 224

[Close]

BLAST of CsGy1G013950.1 vs. NCBI nr
Match: XP_011654092.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X3 [Cucumis sativus])

HSP 1 Score: 441.0 bits (1133), Expect = 3.8e-120
Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLA 120
           LNQIIAPTENAS CIHEIIDACIDKICRLGHLAAAAHLLKSLC+EKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 224

[Close]

BLAST of CsGy1G013950.1 vs. NCBI nr
Match: XP_011654087.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 2.3e-109
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 19  NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASNCIHEI 78
           NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENAS CIHEI
Sbjct: 2   NRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASKCIHEI 61

Query: 79  IDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL 138
           IDACIDKICRLGHLAAAAHLLKSLC+EKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL
Sbjct: 62  IDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLAASERGDTPLLCEVFKVAL 121

Query: 139 LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKA 198
           LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKA
Sbjct: 122 LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRIIFAFSERREIDKA 181

Query: 199 FQIFNQMKCLSCTPDLYTYNIILDMV 225
           FQIFNQMKCLSCTPDLYTYNIILDMV
Sbjct: 182 FQIFNQMKCLSCTPDLYTYNIILDMV 207

[Close]

BLAST of CsGy1G013950.1 vs. NCBI nr
Match: XP_008462492.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cucumis melo])

HSP 1 Score: 377.1 bits (967), Expect = 6.8e-101
Identity = 192/226 (84.96%), Postives = 206/226 (91.15%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKV-FKSSEAYDMVLL 120
           LNQIIAP ENASNC HEI+DACIDKIC LGHLAAAA LLKSLC+EK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LDM+
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDML 226

[Close]

BLAST of CsGy1G013950.1 vs. NCBI nr
Match: XP_008462480.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cucumis melo])

HSP 1 Score: 375.2 bits (962), Expect = 2.6e-100
Identity = 191/224 (85.27%), Postives = 204/224 (91.07%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKV-FKSSEAYDMVLL 120
           LNQIIAP ENASNC HEI+DACIDKIC LGHLAAAA LLKSLC+EK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILD 223
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LD
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLD 224

[Close]

BLAST of CsGy1G013950.1 vs. TrEMBL
Match: tr|A0A0A0LXZ6|A0A0A0LXZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132170 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 2.5e-120
Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED
Sbjct: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLA 120
           LNQIIAPTENAS CIHEIIDACIDKICRLGHLAAAAHLLKSLC+EKVFKSSEAYDMVLLA
Sbjct: 61  LNQIIAPTENASKCIHEIIDACIDKICRLGHLAAAAHLLKSLCNEKVFKSSEAYDMVLLA 120

Query: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180
           ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI
Sbjct: 121 ASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCI 180

Query: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV
Sbjct: 181 VINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 224

[Close]

BLAST of CsGy1G013950.1 vs. TrEMBL
Match: tr|A0A1S3CH34|A0A1S3CH34_CUCME (pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.5e-101
Identity = 192/226 (84.96%), Postives = 206/226 (91.15%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKV-FKSSEAYDMVLL 120
           LNQIIAP ENASNC HEI+DACIDKIC LGHLAAAA LLKSLC+EK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LDM+
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDML 226

[Close]

BLAST of CsGy1G013950.1 vs. TrEMBL
Match: tr|A0A1S3CIJ8|A0A1S3CIJ8_CUCME (pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.7e-100
Identity = 191/224 (85.27%), Postives = 204/224 (91.07%), Query Frame = 0


Query: 1   MSLYHLAIHRNFLHYSYANRIASAPVGNSQIWPLYAIKCLSHQSSGTKIFPNEVKVGDED 60
           MSLY L I+RN LHYSYANRIAS PVGNSQIWPLYAIKC SHQSS T I P+EVKVGDE 
Sbjct: 1   MSLYQLTIYRNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEV 60

Query: 61  LNQIIAPTENASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKV-FKSSEAYDMVLL 120
           LNQIIAP ENASNC HEI+DACIDKIC LGHLAAAA LLKSLC+EK+   SS+AYDMVLL
Sbjct: 61  LNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLL 120

Query: 121 AASERGDTPLLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQK 180
           AASERGDTPLLC+VFKVA++SCKSLSSASYMSFARAFTKTND SKLLECVKEI+E+TSQ 
Sbjct: 121 AASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQN 180

Query: 181 CIVINRIIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILD 223
           C VINRIIFAFS+ REIDKAFQIFNQMKCLSCTPDLYTYNI+LD
Sbjct: 181 CSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLD 224

[Close]

BLAST of CsGy1G013950.1 vs. TrEMBL
Match: tr|A0A2P5C2X1|A0A2P5C2X1_PARAD (Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_188960 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 98/217 (45.16%), Postives = 134/217 (61.75%), Query Frame = 0


Query: 14  HYSYANRIASAPVGNSQIWPLYAIKCL---SHQSSGTKIFPNEVKVGDEDLNQIIAPTE- 73
           H   AN+I S PV     WPL+ +      + +S  TK  PNE +V    LN+I A T  
Sbjct: 44  HKCCANQIISFPVVFFWTWPLFIVASRFIGNSRSFSTKTSPNEEEV---VLNEIFAATAK 103

Query: 74  -NASNCIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLAASERGDTP 133
            NA     EI +A IDK+CR G+L+AAA  LKSL  + VF SS AY+ +L AASE+ D  
Sbjct: 104 GNALRSTSEICNAYIDKLCRSGNLSAAARFLKSLHDKHVFISSNAYEALLAAASEKNDIG 163

Query: 134 LLCEVFKVALLSCKSLSSASYMSFARAFTKTND-SKLLECVKEIIEITSQKCIVINRIIF 193
           L+ +VF  A+ S +S    SY+  A+AF KTND ++L   +K+++E+T     V+NR I 
Sbjct: 164 LVSQVFIDAIGSSESWRPTSYLYIAKAFAKTNDYTRLFRFIKDVVELTFPSLKVLNRTIL 223

Query: 194 AFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
           AF+E R+ID+A  IF+Q+K L C PDL  YNIILD++
Sbjct: 224 AFAEYRQIDQALLIFDQIKSLKCKPDLIMYNIILDIL 257

[Close]

BLAST of CsGy1G013950.1 vs. TrEMBL
Match: tr|A0A2I4H819|A0A2I4H819_9ROSI (pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Juglans regia OX=51240 GN=LOC109014315 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 9.8e-32
Identity = 87/212 (41.04%), Postives = 134/212 (63.21%), Query Frame = 0


Query: 17  YANRIASAPVGNSQIWPLYAI---KCLSHQSSGTKIFPNEVKVGDEDLNQIIAPTENASN 76
           Y N I S+ +G   IWP +A+       +    T+  PNE +V DE ++ I+    NA  
Sbjct: 42  YNNCITSSTLGFPLIWPFFAVINNFIGKYHLLTTQASPNEKEVTDEVISHILTTIINAQR 101

Query: 77  CIHEIIDACIDKICRLGHLAAAAHLLKSLCSEKVFKSSEAYDMVLLAASERGDTPLLCEV 136
              ++    ++K+C  G+L+AAA +L+SL  + +F S  AY+++L+AASER D  LL + 
Sbjct: 102 PNGKVC-TVVNKLCESGNLSAAARILQSLRDKHIFPSPIAYNLLLVAASERHDIDLLSQA 161

Query: 137 FKVALLSCKSLSSASYMSFARAFTKTNDS-KLLECVKEIIEITSQKCIVINRIIFAFSER 196
           FK  L+S  +LSS+SY+  A+AFTKT+DS +LL  ++E+  +TS    V+NRII AF+E 
Sbjct: 162 FKDLLVSRGALSSSSYLMVAKAFTKTDDSVQLLRFIEEVSALTSPSVTVLNRIISAFAEC 221

Query: 197 REIDKAFQIFNQMKCLSCTPDLYTYNIILDMV 225
            ++DKA  I++ +K L C PDL TYN I+D++
Sbjct: 222 GQVDKALLIYDMIKSLRCKPDLVTYNTIMDIL 252

The following BLAST results are available for this feature:

BLAST of CsGy1G013950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654081.1	3.8e-120	99.11	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc...	[more]
XP_011654092.1	3.8e-120	99.11	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X3 [Cuc...	[more]
XP_011654087.1	2.3e-109	99.03	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc...	[more]
XP_008462492.1	6.8e-101	84.96	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X2 [Cuc...	[more]
XP_008462480.1	2.6e-100	85.27	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 isoform X1 [Cuc...	[more]

BLAST of CsGy1G013950.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G013950.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G013950.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXZ6\|A0A0A0LXZ6_CUCSA	2.5e-120	99.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132170 PE=4 SV=1	[more]
tr\|A0A1S3CH34\|A0A1S3CH34_CUCME	4.5e-101	84.96	pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Cucumis melo...	[more]
tr\|A0A1S3CIJ8\|A0A1S3CIJ8_CUCME	1.7e-100	85.27	pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A2P5C2X1\|A0A2P5C2X1_PARAD	1.6e-34	45.16	Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_188960 P...	[more]
tr\|A0A2I4H819\|A0A2I4H819_9ROSI	9.8e-32	41.04	pentatricopeptide repeat-containing protein At1g11900 isoform X2 OS=Juglans regi...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G013950	CsGy1G013950	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G013950.1	CsGy1G013950.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G013950.1.five_prime_UTR.1	CsGy1G013950.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G013950.1.exon.2	CsGy1G013950.1.exon.2	exon
CsGy1G013950.1.exon.1	CsGy1G013950.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G013950.1.CDS.2	CsGy1G013950.1.CDS.2	CDS
CsGy1G013950.1.CDS.1	CsGy1G013950.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G013950.1.three_prime_UTR.1	CsGy1G013950.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 272..326 e-value: 3.9E-11 score: 42.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 216..260 e-value: 5.7E-11 score: 42.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 286..318 e-value: 2.6E-8 score: 31.5 coord: 215..249 e-value: 3.7E-8 score: 31.0 coord: 182..213 e-value: 4.8E-5 score: 21.3 coord: 250..283 e-value: 6.7E-6 score: 24.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 183..209 e-value: 0.1 score: 12.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 283..317 score: 12.584
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 248..282 score: 11.772
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 178..212 score: 8.265
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 318..352 score: 6.796
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 213..247 score: 12.332
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 178..361 e-value: 1.1E-44 score: 155.0
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 96..338
None	No IPR available	PANTHER	PTHR24015:SF488	SUBFAMILY NOT NAMED	coord: 96..338