CSPI01G12280 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G12280
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 7760638 .. 7761036 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAATATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA

mRNA sequence

ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAATATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA

Coding sequence (CDS)

ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAATATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA
Homology
[Close]
BLAST of CSPI01G12280 vs. TrEMBL
Match: A0A0A0LXF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G075010 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.3e-72
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60
           MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC
Sbjct: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60

Query: 61  GGSSVSDYGERSSAYIVRNNNIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120
           GGSSVSDYGERSSAYIVRNN+IKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS
Sbjct: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120

Query: 121 VVQPRPIQVPSP 133
           VVQPRPIQVPSP
Sbjct: 121 VVQPRPIQVPSP 132

[Close]
BLAST of CSPI01G12280 vs. NCBI nr
Match: gi|700209600|gb|KGN64696.1| (hypothetical protein Csa_1G075010 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 6.2e-72
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60
           MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC
Sbjct: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60

Query: 61  GGSSVSDYGERSSAYIVRNNNIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120
           GGSSVSDYGERSSAYIVRNN+IKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS
Sbjct: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120

Query: 121 VVQPRPIQVPSP 133
           VVQPRPIQVPSP
Sbjct: 121 VVQPRPIQVPSP 132

The following BLAST results are available for this feature:
BLAST of CSPI01G12280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G12280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXF9_CUCSA4.3e-7299.24Uncharacterized protein OS=Cucumis sativus GN=Csa_1G075010 PE=4 SV=1[more]
BLAST of CSPI01G12280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G12280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209600|gb|KGN64696.1|6.2e-7299.24hypothetical protein Csa_1G075010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G12280.1CSPI01G12280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G12280Csa1G075010Cucumber (Chinese Long) v2cpicuB000
CSPI01G12280MELO3C002621Melon (DHL92) v3.5.1cpimeB024
CSPI01G12280ClCG03G008080Watermelon (Charleston Gray)cpiwcgB051
CSPI01G12280Lsi02G007720Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G12280MELO3C002621.2Melon (DHL92) v3.6.1cpimedB023
CSPI01G12280CsaV3_1G012470Cucumber (Chinese Long) v3cpicucB001
CSPI01G12280Cla97C03G059370Watermelon (97103) v2cpiwmbB046
CSPI01G12280Bhi08G001869Wax gourdcpiwgoB052
CSPI01G12280CsGy1G012310Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G12280Melon (DHL92) v3.6.1cpimedB076
CSPI01G12280Cucumber (Gy14) v2cgybcpiB161
CSPI01G12280Cucumber (Gy14) v2cgybcpiB248
CSPI01G12280Silver-seed gourdcarcpiB0169
CSPI01G12280Silver-seed gourdcarcpiB0193
CSPI01G12280Silver-seed gourdcarcpiB0581
CSPI01G12280Silver-seed gourdcarcpiB0670
CSPI01G12280Silver-seed gourdcarcpiB0986
CSPI01G12280Cucumber (Chinese Long) v3cpicucB039
CSPI01G12280Cucumber (Chinese Long) v3cpicucB051
CSPI01G12280Watermelon (97103) v2cpiwmbB001
CSPI01G12280Watermelon (97103) v2cpiwmbB023
CSPI01G12280Wax gourdcpiwgoB023
CSPI01G12280Wax gourdcpiwgoB075
CSPI01G12280Wild cucumber (PI 183967)cpicpiB026
CSPI01G12280Wild cucumber (PI 183967)cpicpiB038
CSPI01G12280Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G12280Wild cucumber (PI 183967)cpicpiB051
CSPI01G12280Cucumber (Gy14) v1cgycpiB016
CSPI01G12280Cucumber (Gy14) v1cgycpiB162
CSPI01G12280Cucumber (Gy14) v1cgycpiB172
CSPI01G12280Cucurbita maxima (Rimu)cmacpiB009
CSPI01G12280Cucurbita maxima (Rimu)cmacpiB219
CSPI01G12280Cucurbita maxima (Rimu)cmacpiB395
CSPI01G12280Cucurbita maxima (Rimu)cmacpiB654
CSPI01G12280Cucurbita maxima (Rimu)cmacpiB865
CSPI01G12280Cucurbita moschata (Rifu)cmocpiB000
CSPI01G12280Cucurbita moschata (Rifu)cmocpiB205
CSPI01G12280Cucurbita moschata (Rifu)cmocpiB383
CSPI01G12280Cucurbita moschata (Rifu)cmocpiB423
CSPI01G12280Cucurbita moschata (Rifu)cmocpiB647
CSPI01G12280Cucurbita moschata (Rifu)cmocpiB846
CSPI01G12280Cucumber (Chinese Long) v2cpicuB034
CSPI01G12280Cucumber (Chinese Long) v2cpicuB044
CSPI01G12280Cucumber (Chinese Long) v2cpicuB051
CSPI01G12280Melon (DHL92) v3.5.1cpimeB086
CSPI01G12280Watermelon (Charleston Gray)cpiwcgB011
CSPI01G12280Watermelon (Charleston Gray)cpiwcgB016
CSPI01G12280Watermelon (97103) v1cpiwmB026
CSPI01G12280Watermelon (97103) v1cpiwmB043
CSPI01G12280Watermelon (97103) v1cpiwmB082
CSPI01G12280Cucurbita pepo (Zucchini)cpecpiB052
CSPI01G12280Cucurbita pepo (Zucchini)cpecpiB475
CSPI01G12280Cucurbita pepo (Zucchini)cpecpiB506
CSPI01G12280Cucurbita pepo (Zucchini)cpecpiB771
CSPI01G12280Bottle gourd (USVL1VR-Ls)cpilsiB018