Cla97C03G059370 (gene) Watermelon (97103) v2

Overview
NameCla97C03G059370
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr03 : 8793072 .. 8793461 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCCACACAAAGCAGCCTGATATGATCAGTAACACCACAAATAATTGGGTCAACTCTCTTTCCTTTTCTGGCTACTTGAACTCCAAAGACCGGGAACAACCCAACTCGAGTCCGGATGGATTCGAGTTGGCCCCAACCCGTCGTGGTTCAAGTCTGGGCAATGACGAGATTTTAGTCTTATCTGGGACCAATAGATCATCGCCATACATAGTGAGAAACAACAGTATCAGGAGGGGAAGTCAAGAAATAAGGGACAAAGAAAATAAATCATCATGGTCGTCGGGATGGAGTGTTTTTCGGTCGTTTGTTTCACCATGTAGGGAGTGTCGAGCTAGCAAGCCCAATGCAGTTCAACCACGTCCCACTCAAAGGCCTTCATCATGA

mRNA sequence

ATGGGAATCCACACAAAGCAGCCTGATATGATCAGTAACACCACAAATAATTGGGTCAACTCTCTTTCCTTTTCTGGCTACTTGAACTCCAAAGACCGGGAACAACCCAACTCGAGTCCGGATGGATTCGAGTTGGCCCCAACCCGTCGTGGTTCAAGTCTGGGCAATGACGAGATTTTAGTCTTATCTGGGACCAATAGATCATCGCCATACATAGTGAGAAACAACAGTATCAGGAGGGGAAGTCAAGAAATAAGGGACAAAGAAAATAAATCATCATGGTCGTCGGGATGGAGTGTTTTTCGGTCGTTTGTTTCACCATGTAGGGAGTGTCGAGCTAGCAAGCCCAATGCAGTTCAACCACGTCCCACTCAAAGGCCTTCATCATGA

Coding sequence (CDS)

ATGGGAATCCACACAAAGCAGCCTGATATGATCAGTAACACCACAAATAATTGGGTCAACTCTCTTTCCTTTTCTGGCTACTTGAACTCCAAAGACCGGGAACAACCCAACTCGAGTCCGGATGGATTCGAGTTGGCCCCAACCCGTCGTGGTTCAAGTCTGGGCAATGACGAGATTTTAGTCTTATCTGGGACCAATAGATCATCGCCATACATAGTGAGAAACAACAGTATCAGGAGGGGAAGTCAAGAAATAAGGGACAAAGAAAATAAATCATCATGGTCGTCGGGATGGAGTGTTTTTCGGTCGTTTGTTTCACCATGTAGGGAGTGTCGAGCTAGCAAGCCCAATGCAGTTCAACCACGTCCCACTCAAAGGCCTTCATCATGA

Protein sequence

MGIHTKQPDMISNTTNNWVNSLSFSGYLNSKDREQPNSSPDGFELAPTRRGSSLGNDEILVLSGTNRSSPYIVRNNSIRRGSQEIRDKENKSSWSSGWSVFRSFVSPCRECRASKPNAVQPRPTQRPSS
Homology
[Close]
BLAST of Cla97C03G059370 vs. NCBI nr
Match: KGN64696.1 (hypothetical protein Csa_1G075010 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25
Identity = 74/140 (52.86%), Postives = 91/140 (65.00%), Query Frame = 0 

Query: 1   MGIHTKQPDMISNTTNNWVNSLSFSGYLNSKDREQPNSS------------PDGFELAPT 60
           M IH K+P M S+TT+ W+NSLSFSGYLNSKDR+ P+                GFE +PT
Sbjct: 1   MRIHRKKPHM-SSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPT 60

Query: 61  RRGSSLGNDEILVLSGTNRSSPYIVRNNSIRRGSQEIRDKENKSSWSSGWSVFRSFVSPC 120
             GSS       V     RSS YIVRNNSI+RGS++I +++++S W SGW +F  FV PC
Sbjct: 61  CGGSS-------VSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRW-SGWRIFWLFVLPC 120

Query: 121 RECRASKPNAVQPRPTQRPS 129
           RECRA KP+ VQPRP Q PS
Sbjct: 121 RECRARKPSVVQPRPIQVPS 131

[Close]
BLAST of Cla97C03G059370 vs. TrEMBL
Match: tr|A0A0A0LXF9|A0A0A0LXF9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 74/140 (52.86%), Postives = 91/140 (65.00%), Query Frame = 0 

Query: 1   MGIHTKQPDMISNTTNNWVNSLSFSGYLNSKDREQPNSS------------PDGFELAPT 60
           M IH K+P M S+TT+ W+NSLSFSGYLNSKDR+ P+                GFE +PT
Sbjct: 1   MRIHRKKPHM-SSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPT 60

Query: 61  RRGSSLGNDEILVLSGTNRSSPYIVRNNSIRRGSQEIRDKENKSSWSSGWSVFRSFVSPC 120
             GSS       V     RSS YIVRNNSI+RGS++I +++++S W SGW +F  FV PC
Sbjct: 61  CGGSS-------VSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRW-SGWRIFWLFVLPC 120

Query: 121 RECRASKPNAVQPRPTQRPS 129
           RECRA KP+ VQPRP Q PS
Sbjct: 121 RECRARKPSVVQPRPIQVPS 131

The following BLAST results are available for this feature:
BLAST of Cla97C03G059370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64696.12.8e-2552.86hypothetical protein Csa_1G075010 [Cucumis sativus][more]
BLAST of Cla97C03G059370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXF9|A0A0A0LXF9_CUCSA1.9e-2552.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1[more]
BLAST of Cla97C03G059370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C03G059370 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G059370.1Cla97C03G059370.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..56

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C03G059370Csa1G075010Cucumber (Chinese Long) v2cuwmbB044
Cla97C03G059370MELO3C002621Melon (DHL92) v3.5.1mewmbB154
Cla97C03G059370ClCG03G008080Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G059370CSPI01G12280Wild cucumber (PI 183967)cpiwmbB046
Cla97C03G059370Lsi02G007720Bottle gourd (USVL1VR-Ls)lsiwmbB181
Cla97C03G059370CsGy1G012310Cucumber (Gy14) v2cgybwmbB043
Cla97C03G059370MELO3C002621.2Melon (DHL92) v3.6.1medwmbB143
Cla97C03G059370CsaV3_1G012470Cucumber (Chinese Long) v3cucwmbB043
Cla97C03G059370Bhi08G001869Wax gourdwgowmbB471
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G059370Watermelon (97103) v2wmbwmbB015
Cla97C03G059370Silver-seed gourdcarwmbB0156
Cla97C03G059370Silver-seed gourdcarwmbB0573
Cla97C03G059370Silver-seed gourdcarwmbB0671
Cla97C03G059370Silver-seed gourdcarwmbB1000
Cla97C03G059370Cucumber (Gy14) v2cgybwmbB429
Cla97C03G059370Cucumber (Gy14) v1cgywmbB024
Cla97C03G059370Cucumber (Gy14) v1cgywmbB202
Cla97C03G059370Cucurbita maxima (Rimu)cmawmbB226
Cla97C03G059370Cucurbita maxima (Rimu)cmawmbB416
Cla97C03G059370Cucurbita maxima (Rimu)cmawmbB682
Cla97C03G059370Cucurbita maxima (Rimu)cmawmbB887
Cla97C03G059370Cucurbita moschata (Rifu)cmowmbB210
Cla97C03G059370Cucurbita moschata (Rifu)cmowmbB396
Cla97C03G059370Cucurbita moschata (Rifu)cmowmbB655
Cla97C03G059370Cucurbita moschata (Rifu)cmowmbB857
Cla97C03G059370Wild cucumber (PI 183967)cpiwmbB477
Cla97C03G059370Cucumber (Chinese Long) v3cucwmbB470
Cla97C03G059370Cucumber (Chinese Long) v2cuwmbB453
Cla97C03G059370Bottle gourd (USVL1VR-Ls)lsiwmbB130
Cla97C03G059370Melon (DHL92) v3.6.1medwmbB523
Cla97C03G059370Melon (DHL92) v3.5.1mewmbB530
Cla97C03G059370Watermelon (Charleston Gray)wcgwmbB104
Cla97C03G059370Watermelon (97103) v1wmwmbB124
Cla97C03G059370Watermelon (97103) v1wmwmbB261
Cla97C03G059370Wax gourdwgowmbB420