ClCG03G008080 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G008080
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 9216078 .. 9216467 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCCACACAAAGCAGCCTGATATGATCAGTAACACCACAAATAATTGGGTCAACTCTCTTTCCTTTTCTGGCTACTTGAACTCCAAAGACCGGGAACAACCCAACTCGAGTCCGGATGGATTCGAGTTGGCCCCAACCCGTCGTGGTTCAAGTCTGGGCAATGACGAGATTTTAGTCTTATCTGGGACCAATAGATCATCGCCATACATAGTGAGAAACAACAGTATCAGGAGGGGAAGTCAAGAAATAAGGGACAAAGAAAATAAATCATCATGGTCGTCGGGATGGAGTGTTTTTCGGTCGTTTGTTTCACCATGTAGGGAGTGTCGAGCTAGCAAGCCCAATGCAGTTCAACCACGTCCCACTCAAAGGCCTTCATCATGA

mRNA sequence

ATGGGAATCCACACAAAGCAGCCTGATATGATCAGTAACACCACAAATAATTGGGTCAACTCTCTTTCCTTTTCTGGCTACTTGAACTCCAAAGACCGGGAACAACCCAACTCGAGTCCGGATGGATTCGAGTTGGCCCCAACCCGTCGTGGTTCAAGTCTGGGCAATGACGAGATTTTAGTCTTATCTGGGACCAATAGATCATCGCCATACATAGTGAGAAACAACAGTATCAGGAGGGGAAGTCAAGAAATAAGGGACAAAGAAAATAAATCATCATGGTCGTCGGGATGGAGTGTTTTTCGGTCGTTTGTTTCACCATGTAGGGAGTGTCGAGCTAGCAAGCCCAATGCAGTTCAACCACGTCCCACTCAAAGGCCTTCATCATGA

Coding sequence (CDS)

ATGGGAATCCACACAAAGCAGCCTGATATGATCAGTAACACCACAAATAATTGGGTCAACTCTCTTTCCTTTTCTGGCTACTTGAACTCCAAAGACCGGGAACAACCCAACTCGAGTCCGGATGGATTCGAGTTGGCCCCAACCCGTCGTGGTTCAAGTCTGGGCAATGACGAGATTTTAGTCTTATCTGGGACCAATAGATCATCGCCATACATAGTGAGAAACAACAGTATCAGGAGGGGAAGTCAAGAAATAAGGGACAAAGAAAATAAATCATCATGGTCGTCGGGATGGAGTGTTTTTCGGTCGTTTGTTTCACCATGTAGGGAGTGTCGAGCTAGCAAGCCCAATGCAGTTCAACCACGTCCCACTCAAAGGCCTTCATCATGA

Protein sequence

MGIHTKQPDMISNTTNNWVNSLSFSGYLNSKDREQPNSSPDGFELAPTRRGSSLGNDEILVLSGTNRSSPYIVRNNSIRRGSQEIRDKENKSSWSSGWSVFRSFVSPCRECRASKPNAVQPRPTQRPSS
Homology
[Close]
BLAST of ClCG03G008080 vs. TrEMBL
Match: A0A0A0LXF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G075010 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 73/140 (52.14%), Postives = 92/140 (65.71%), Query Frame = 1 

Query: 1   MGIHTKQPDMISNTTNNWVNSLSFSGYLNSKDREQPNSSP------------DGFELAPT 60
           M IH K+P M S+TT+ W+NSLSFSGYLNSKDR+ P+                GFE +PT
Sbjct: 1   MRIHRKKPHM-SSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPT 60

Query: 61  RRGSSLGNDEILVLSGTNRSSPYIVRNNSIRRGSQEIRDKENKSSWSSGWSVFRSFVSPC 120
             GSS+ +          RSS YIVRNNSI+RGS++I +++++S WS GW +F  FV PC
Sbjct: 61  CGGSSVSDYG-------ERSSAYIVRNNSIKRGSKKIWEEKDESRWS-GWRIFWLFVLPC 120

Query: 121 RECRASKPNAVQPRPTQRPS 129
           RECRA KP+ VQPRP Q PS
Sbjct: 121 RECRARKPSVVQPRPIQVPS 131

[Close]
BLAST of ClCG03G008080 vs. NCBI nr
Match: gi|700209600|gb|KGN64696.1| (hypothetical protein Csa_1G075010 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-27
Identity = 73/140 (52.14%), Postives = 92/140 (65.71%), Query Frame = 1 

Query: 1   MGIHTKQPDMISNTTNNWVNSLSFSGYLNSKDREQPNSSP------------DGFELAPT 60
           M IH K+P M S+TT+ W+NSLSFSGYLNSKDR+ P+                GFE +PT
Sbjct: 1   MRIHRKKPHM-SSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPT 60

Query: 61  RRGSSLGNDEILVLSGTNRSSPYIVRNNSIRRGSQEIRDKENKSSWSSGWSVFRSFVSPC 120
             GSS+ +          RSS YIVRNNSI+RGS++I +++++S WS GW +F  FV PC
Sbjct: 61  CGGSSVSDYG-------ERSSAYIVRNNSIKRGSKKIWEEKDESRWS-GWRIFWLFVLPC 120

Query: 121 RECRASKPNAVQPRPTQRPS 129
           RECRA KP+ VQPRP Q PS
Sbjct: 121 RECRARKPSVVQPRPIQVPS 131

The following BLAST results are available for this feature:
BLAST of ClCG03G008080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXF9_CUCSA1.4e-2752.14Uncharacterized protein OS=Cucumis sativus GN=Csa_1G075010 PE=4 SV=1[more]
BLAST of ClCG03G008080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209600|gb|KGN64696.1|2.0e-2752.14hypothetical protein Csa_1G075010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G008080.1ClCG03G008080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G008080Csa1G075010Cucumber (Chinese Long) v2cuwcgB048
ClCG03G008080MELO3C002621Melon (DHL92) v3.5.1mewcgB150
ClCG03G008080Cla97C03G059370Watermelon (97103) v2wcgwmbB186
ClCG03G008080Bhi08G001869Wax gourdwcgwgoB341
ClCG03G008080CSPI01G12280Wild cucumber (PI 183967)cpiwcgB051
ClCG03G008080Lsi02G007720Bottle gourd (USVL1VR-Ls)lsiwcgB188
ClCG03G008080CsGy1G012310Cucumber (Gy14) v2cgybwcgB045
ClCG03G008080MELO3C002621.2Melon (DHL92) v3.6.1medwcgB142
ClCG03G008080CsaV3_1G012470Cucumber (Chinese Long) v3cucwcgB052
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G008080Cucumber (Gy14) v2cgybwcgB424
ClCG03G008080Melon (DHL92) v3.6.1medwcgB518
ClCG03G008080Silver-seed gourdcarwcgB0144
ClCG03G008080Silver-seed gourdcarwcgB0532
ClCG03G008080Silver-seed gourdcarwcgB0625
ClCG03G008080Silver-seed gourdcarwcgB0926
ClCG03G008080Cucumber (Chinese Long) v3cucwcgB483
ClCG03G008080Watermelon (97103) v2wcgwmbB174
ClCG03G008080Wax gourdwcgwgoB334
ClCG03G008080Watermelon (Charleston Gray)wcgwcgB093
ClCG03G008080Cucumber (Gy14) v1cgywcgB027
ClCG03G008080Cucumber (Gy14) v1cgywcgB205
ClCG03G008080Cucurbita maxima (Rimu)cmawcgB195
ClCG03G008080Cucurbita maxima (Rimu)cmawcgB357
ClCG03G008080Cucurbita maxima (Rimu)cmawcgB583
ClCG03G008080Cucurbita maxima (Rimu)cmawcgB759
ClCG03G008080Cucurbita moschata (Rifu)cmowcgB185
ClCG03G008080Cucurbita moschata (Rifu)cmowcgB352
ClCG03G008080Cucurbita moschata (Rifu)cmowcgB582
ClCG03G008080Cucurbita moschata (Rifu)cmowcgB760
ClCG03G008080Wild cucumber (PI 183967)cpiwcgB486
ClCG03G008080Cucumber (Chinese Long) v2cuwcgB462
ClCG03G008080Melon (DHL92) v3.5.1mewcgB523
ClCG03G008080Watermelon (97103) v1wcgwmB223
ClCG03G008080Watermelon (97103) v1wcgwmB238
ClCG03G008080Cucurbita pepo (Zucchini)cpewcgB035
ClCG03G008080Cucurbita pepo (Zucchini)cpewcgB069
ClCG03G008080Cucurbita pepo (Zucchini)cpewcgB431
ClCG03G008080Cucurbita pepo (Zucchini)cpewcgB468
ClCG03G008080Bottle gourd (USVL1VR-Ls)lsiwcgB133