CsaV3_1G012470 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G012470
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 7753708 .. 7754106 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAGTATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA

mRNA sequence

ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAGTATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA

Coding sequence (CDS)

ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAGTATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA

Protein sequence

MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTCGGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPSVVQPRPIQVPSP

Homology

[Close]

BLAST of CsaV3_1G012470 vs. NCBI nr
Match: KGN64696.1 (hypothetical protein Csa_1G075010 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 5.4e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60
           MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC
Sbjct: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60

Query: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120
           GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS
Sbjct: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120

Query: 121 VVQPRPIQVPSP 133
           VVQPRPIQVPSP
Sbjct: 121 VVQPRPIQVPSP 132

[Close]

BLAST of CsaV3_1G012470 vs. TrEMBL
Match: tr|A0A0A0LXF9|A0A0A0LXF9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.6e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60
           MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC
Sbjct: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60

Query: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120
           GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS
Sbjct: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120

Query: 121 VVQPRPIQVPSP 133
           VVQPRPIQVPSP
Sbjct: 121 VVQPRPIQVPSP 132

The following BLAST results are available for this feature:

BLAST of CsaV3_1G012470 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64696.1	5.4e-72	100.00	hypothetical protein Csa_1G075010 [Cucumis sativus]	[more]

BLAST of CsaV3_1G012470 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G012470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G012470 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXF9\|A0A0A0LXF9_CUCSA	3.6e-72	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G012470.1	CsaV3_1G012470.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G012470	CSPI01G12280	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G012470	CsGy1G012310	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G012470	MELO3C002621	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G012470	ClCG03G008080	Watermelon (Charleston Gray)	cucwcgB052
CsaV3_1G012470	Lsi02G007720	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G012470	MELO3C002621.2	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G012470	Cla97C03G059370	Watermelon (97103) v2	cucwmbB043
CsaV3_1G012470	Bhi08G001869	Wax gourd	cucwgoB054

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G012470	Cucumber (Chinese Long) v3	cuccucB030
CsaV3_1G012470	Cucumber (Chinese Long) v3	cuccucB044
CsaV3_1G012470	Silver-seed gourd	carcucB0170
CsaV3_1G012470	Silver-seed gourd	carcucB0193
CsaV3_1G012470	Silver-seed gourd	carcucB0582
CsaV3_1G012470	Silver-seed gourd	carcucB0672
CsaV3_1G012470	Silver-seed gourd	carcucB0991
CsaV3_1G012470	Cucumber (Gy14) v2	cgybcucB248
CsaV3_1G012470	Cucumber (Gy14) v1	cgycucB018
CsaV3_1G012470	Cucumber (Gy14) v1	cgycucB165
CsaV3_1G012470	Cucumber (Gy14) v1	cgycucB174
CsaV3_1G012470	Cucurbita maxima (Rimu)	cmacucB0011
CsaV3_1G012470	Cucurbita maxima (Rimu)	cmacucB0249
CsaV3_1G012470	Cucurbita maxima (Rimu)	cmacucB0465
CsaV3_1G012470	Cucurbita maxima (Rimu)	cmacucB0515
CsaV3_1G012470	Cucurbita maxima (Rimu)	cmacucB0774
CsaV3_1G012470	Cucurbita maxima (Rimu)	cmacucB1005
CsaV3_1G012470	Cucurbita moschata (Rifu)	cmocucB0000
CsaV3_1G012470	Cucurbita moschata (Rifu)	cmocucB0235
CsaV3_1G012470	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G012470	Cucurbita moschata (Rifu)	cmocucB0503
CsaV3_1G012470	Cucurbita moschata (Rifu)	cmocucB0759
CsaV3_1G012470	Cucurbita moschata (Rifu)	cmocucB0989
CsaV3_1G012470	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G012470	Cucurbita pepo (Zucchini)	cpecucB0060
CsaV3_1G012470	Cucurbita pepo (Zucchini)	cpecucB0585
CsaV3_1G012470	Cucurbita pepo (Zucchini)	cpecucB0624
CsaV3_1G012470	Cucurbita pepo (Zucchini)	cpecucB0668
CsaV3_1G012470	Cucurbita pepo (Zucchini)	cpecucB0812
CsaV3_1G012470	Cucurbita pepo (Zucchini)	cpecucB0953
CsaV3_1G012470	Wild cucumber (PI 183967)	cpicucB202
CsaV3_1G012470	Wild cucumber (PI 183967)	cpicucB310
CsaV3_1G012470	Bottle gourd (USVL1VR-Ls)	cuclsiB020
CsaV3_1G012470	Melon (DHL92) v3.5.1	cucmeB092
CsaV3_1G012470	Melon (DHL92) v3.6.1	cucmedB085
CsaV3_1G012470	Watermelon (Charleston Gray)	cucwcgB012
CsaV3_1G012470	Watermelon (Charleston Gray)	cucwcgB015
CsaV3_1G012470	Watermelon (97103) v1	cucwmB029
CsaV3_1G012470	Watermelon (97103) v1	cucwmB050
CsaV3_1G012470	Watermelon (97103) v1	cucwmB088
CsaV3_1G012470	Watermelon (97103) v2	cucwmbB001
CsaV3_1G012470	Watermelon (97103) v2	cucwmbB022
CsaV3_1G012470	Wax gourd	cucwgoB026
CsaV3_1G012470	Wax gourd	cucwgoB080