CSPI01G12280.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G12280.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 7760638 .. 7761036 (+)
Sequence length	399

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAATATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA

mRNA sequence

ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAATATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA

Coding sequence (CDS)

ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAATATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA

Homology

[Close]

BLAST of CSPI01G12280.1 vs. TrEMBL
Match: A0A0A0LXF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G075010 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.3e-72
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60
           MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC
Sbjct: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60

Query: 61  GGSSVSDYGERSSAYIVRNNNIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120
           GGSSVSDYGERSSAYIVRNN+IKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS
Sbjct: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120

Query: 121 VVQPRPIQVPSP 133
           VVQPRPIQVPSP
Sbjct: 121 VVQPRPIQVPSP 132

[Close]

BLAST of CSPI01G12280.1 vs. NCBI nr
Match: gi|700209600|gb|KGN64696.1| (hypothetical protein Csa_1G075010 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 6.2e-72
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60
           MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC
Sbjct: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60

Query: 61  GGSSVSDYGERSSAYIVRNNNIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120
           GGSSVSDYGERSSAYIVRNN+IKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS
Sbjct: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120

Query: 121 VVQPRPIQVPSP 133
           VVQPRPIQVPSP
Sbjct: 121 VVQPRPIQVPSP 132

The following BLAST results are available for this feature:

BLAST of CSPI01G12280.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G12280.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXF9_CUCSA	4.3e-72	99.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G075010 PE=4 SV=1	[more]

BLAST of CSPI01G12280.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G12280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209600\|gb\|KGN64696.1\|	6.2e-72	99.24	hypothetical protein Csa_1G075010 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G12280	CSPI01G12280	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G12280.1	CSPI01G12280.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G12280.1.cds1	CSPI01G12280.1.cds1	CDS