CsaV3_6G038840 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCATTTTGTAGGTATAAATACATACGTCTCGTTTGTAATTGGAAGTGAAAATTTTGAATTGATGGAAGGGCTTCCCTTGCAATCTCACTCCAACTCCTTCATGAACTCTCTGCCCTCTTCGAAGCTCAAACTCAAACTTCACCATTTCAGATTTCTTTGTACTTCCTCTTTCTCTTCAATTTGTTCTTCTGAAATCTCTACTATATCTTCTTCTTCCGTTCGGAAAGATAGCAGCGGCAAAGCTAAATTGGCAATCGCCCACGCTCAACTCAAGGACAACTGGTTGGCTTCTCTTTCCTGTCCTTTTCCTCTTGGTCACGATTACTCCTCCAATTCTTCCTCACCTGACCGAAATGCGGCTTCCGAATGTGTTATTGGCGTCGATCCCGATGTTTCTGGTGCTGTGGCGCTCTTGAGAACCGATGAATCGATTTCTTCGGCTCAGGTAGCTGGTTTTGTTTTCGCGTTTTTTGTTACTTTTGTTTAAGTTTAGGGATTATAGTGGTATGTGTTTGTTCTTATATGGCTTTGTTGTTCATGTTTGGCTATTGGTTGTATATACTTGGCTGATTTTGTCTTTATGATTGAGGGATTAAAAATAGTAGGTGACTGATAAGGGGGGAAAATTGGAAATCGTATTTGTAATTTACTTGTCTGCAAGCATGGTTGAAGTTTTTCCCCTTTCAGTAGTACTGTTAGTGCATAACTACATTGTTAGAAGCTTTCCAGATATGGGAGATGCTTATCCATCCAATGTAAGACTAAAGTGCTGATGAAATGTTAAACCTAAGTACAAAACAAGATCGATACAATTCTTCCTCTTTTTTTTTCGTCTTTTTATTTTGTTAATGATCGATGCAATTCAAAGTAAAAATAGTTATTACAGTTTGATTTCTTTTTAATCTTTTTTGTTTTTCAATTTGTTAGGTGTATGATTCTCCCCACGTGCAAATACTAGTTGGTGGAAGGAAACGGAAACGGTTAGATGCTAAGTCAATTGTCCAACTTCTTCACAGCTTTAATGCTCCCATTGGTACGAATATGATTGTATTTCTGTAGATTATTGTCTCTGAATACTTTTGCATACCGTATGTCTGTACTGGGATTGGGTGTTTTGTATAATTCTCAACTGACATAAATGTTTCTGGGTATGATGACTACGATCAAACGAAAATGAATATTTGGCTGTTTATAGCCAAAATAATGGTAAAGAAATTGGGTATGTCCTTTCATCTCTCTGTCTTTCCCCAGCAAATATTTTCATAGAGTTTACCTAAAGACAGGAAATGCTATACCCAACATATTGAGTTGAACTTCTTCACCCGAGGCTCTTTAGTTCCACACATTTGGCTGTTTATTTTTTTTAAATGTTGGTTTAGTAGGAAAATGTATCGATATCCTTGTTCCCTTTGTTTTCATCTCCCTATTTTAATGCATACTTCTATTTTCTTCATTTAACATACAACATGTGGGTCTGTTTTTAATGAGTTGATGATCCCAATTTTTAGGTACTACTGCATATCTGGAGCAGTCAAATCCATTTCCAAAGGATGGAAAACAGGTATGCCATTGATTTTAATTAGACTTCATTACAAGGAGGAATATAATTAGTTGGAGTATTTCTTGGATTATCTTTTTTTTATTTCTTTTCCCCACTAATTTCATTTTCTTTCTCTGAAGGGGTGGTGGGGTGGAGGATTTGGTTATGGATTGTGGATTGGCGTATTAGTTGGGCTAGGATTTTCTGTTGTTCCTGTGCCACCCCTTGCGTGGAAAAACAAATTTGAGCTATCGGGAAAGGATACTTCTAAGGTAAGTTCAGCCAATTGCCAACACTAGTCTAGGTAGTTGTCTCATTCACATATAGATCAAACACTTTATAATGTTCAATAGCCCTTTATCGTTATTACTGATCTCAATCTTTAGTGTGTCATTACCAATACGTAAAAAGTTAACCTAGTGGTAAACAAAGGGCGTTAAGTCGAGATGTTCAAGGGTGGGGCAGGGAAGGGGAAGTGGAGCAGTTCCCCATCCTTTAGTCATCGGGGAAAATTTTCTCCCCACTCCTTCCCCAATTCTCGAGGTTAAATGAACATCTCTAATATTGAGTTTGATAAAGGGCTAAGAGGGAATGAGTTCAATTCATGGTATATATATATATATTTAATATCTAATGAATTTTTTGACACTCAAATGTTGTAGGGTTAGACAAGTTGTCTTGTGAGCTTAGTTAAGGTGAGCTAAGCTGGTTCAAACACTTGCAAGTATCTAAACAAAATAAAAAAGTTTGTTATAGAACATATATTAGTGGCTAAAATCCGCGTTAATTTAATGATTTTATGTTCTTTAACTACCATCCCATGTTTCATTCTGAACAAGGGGAAAGGACTTCCAATCGTCTTATGCCACAAACATATTTATAAGACAGAAATAGCTGAGGGATAACAGATTCCTCCCAGAACTAAAAACAGAGCAGCCATTTATCTCAATAATGGTTATATTTCTGTTTAGTTTTAAAAAACTTGACTTTTGCTGATATGTGAAGAATTATACTCGTACCACCTCTCACACGGTTACAGCCTTTTCTAGCCGTGGCGATCCATAAAATTTATTGACAGGGGATTTTATAGTTTAATAAAAATAATAAGAAAAAATTGAACCTATGTCTAGTGGGAATCAAGAGATAGTCTTACCACTGGACAAACGTTTTGTATTGGTGTTTTTTCAGTTTTTTATATATATATTATATAAATAACATAAAGTTAAGGAGAGCTCGAGCCCTTAAATCTACCCTGTCTTCTTGTATACCAACTCTTATTGGAATTAATGTTTTAGAAAGTGATGGATTAATACTAGAAGTTAAAGCCAAAGGATACTGACTAAATGTGAACTCTATACTTTATTAGTTTACCAACGAATTGTTGGTTCGTCCTGCTTTCTGCTATTATTGTCTGCTCTATTGTATATTTTGTTATCTAGAAGTATTCTTTCTTATACTAATTTTATTTTGAATATTTTCATTGTAGGATGACAGTCGGAGGATTGCATCTGAATTATTTCCATCTCTAACCCCACTCTTGAAGAGGAAAAAAGATCACGGTATTTTATTACGTATTTTGTATGCTGTATGTTTCAAAAGTTCGTTAATTTTCAATTTTTATATTTGGACAAGAAGTTGGATAGATATCATATCTCACGTAACATACATAAATTTAGCATTTCTTTTAAAACAAAATATTGGGTGAAAGAGTCGAAACTCTTGACCTTTATGATTAAGTTCTATGCTCATTTTGATGACATTTTAGAAATGAAAGACTCGTTCTTTTAACTCATCTCTACAAAGTTAGGTTGAGGGCAATGATGAAGCTCTAAGTGAAACAAACACTTATTTTGTTATGGTTTTTCACCACTTGGAGGAGTTGTAAAATTCTTGTAAATGTACTAAAACCCATAAGCTTCTTCCAAGATTTGCATCTTCATTTCATTAACAAGAAGAAAACAGAGTTGGGTGTGATATAATGAAAAATTATTCTTTCATGTATCCCTTAAAAACATTTGTGCCTTTCCTCGTGTTTGCAGGGAGGGCTGATGCTTTACTCATTGCTGCTTATGGAAAAGGCTTGAAGTTGAATTCGAAAACACCATTGACTTAGAGGAGTCGATAGCTTTGGTTGGTATGGCAGATTGTCCTGATTCGATTCTTCCAATGAATTCAGGTCAAGGTTTGGCATTGAATAGAGTGAATGCAAGTGATGGGTGAGAGAGTGTATATTCCACATTTGATGAGTTCATTTGCTTTTTGATTATTTTGATTAAGGTTAACTAACCATTCGATCATGTTGCTAAATTAGAAATGAGCCTTGTAGCATTAGTAACTCGGTAACGAAATGAAATTGTTGTAGATTAGAAACCTTTGTATTATTAGAGATTGACATAACTTAACTATATTTTTTGTATGCAGAAAACGATTTTGGGTTGTGTTAGTTTTCTTTTGGATAATTGTAATGGATGGTAATTTGAAAATAATAATTAAGTATATAAGATTTTTAAAAAATTGTAAATATAACAAAACCTCCTTAAAAGGATTTTTTTTTCGCAGTTCAAATGAGACTCCTTAGTCGAGGACAAGGAATAGAACAAAACATGGCAAATGCATATTCTCTCTTTTAACACTTGAAATCATTAAGATTTAAAAAAAAAACTATAAAGTTGTAAAGCAAAAATAATAAAGG ATGGAAGGGCTTCCCTTGCAATCTCACTCCAACTCCTTCATGAACTCTCTGCCCTCTTCGAAGCTCAAACTCAAACTTCACCATTTCAGATTTCTTTGTACTTCCTCTTTCTCTTCAATTTGTTCTTCTGAAATCTCTACTATATCTTCTTCTTCCGTTCGGAAAGATAGCAGCGGCAAAGCTAAATTGGCAATCGCCCACGCTCAACTCAAGGACAACTGGTTGGCTTCTCTTTCCTGTCCTTTTCCTCTTGGTCACGATTACTCCTCCAATTCTTCCTCACCTGACCGAAATGCGGCTTCCGAATGTGTTATTGGCGTCGATCCCGATGTTTCTGGTGCTGTGGCGCTCTTGAGAACCGATGAATCGATTTCTTCGGCTCAGGTGTATGATTCTCCCCACGTGCAAATACTAGTTGGTGGAAGGAAACGGAAACGGTTAGATGCTAAGTCAATTGTCCAACTTCTTCACAGCTTTAATGCTCCCATTGGTACTACTGCATATCTGGAGCAGTCAAATCCATTTCCAAAGGATGGAAAACAGGGGTGGTGGGGTGGAGGATTTGGTTATGGATTGTGGATTGGCGTATTAGTTGGGCTAGGATTTTCTGTTGTTCCTGTGCCACCCCTTGCGTGGAAAAACAAATTTGAGCTATCGGGAAAGGATACTTCTAAGGATGACAGTCGGAGGATTGCATCTGAATTATTTCCATCTCTAACCCCACTCTTGAAGAGGAAAAAAGATCACGGGAGGGCTGATGCTTTACTCATTGCTGCTTATGGAAAAGGCTTGAAGTTGAATTCGAAAACACCATTGACTTAG ATGGAAGGGCTTCCCTTGCAATCTCACTCCAACTCCTTCATGAACTCTCTGCCCTCTTCGAAGCTCAAACTCAAACTTCACCATTTCAGATTTCTTTGTACTTCCTCTTTCTCTTCAATTTGTTCTTCTGAAATCTCTACTATATCTTCTTCTTCCGTTCGGAAAGATAGCAGCGGCAAAGCTAAATTGGCAATCGCCCACGCTCAACTCAAGGACAACTGGTTGGCTTCTCTTTCCTGTCCTTTTCCTCTTGGTCACGATTACTCCTCCAATTCTTCCTCACCTGACCGAAATGCGGCTTCCGAATGTGTTATTGGCGTCGATCCCGATGTTTCTGGTGCTGTGGCGCTCTTGAGAACCGATGAATCGATTTCTTCGGCTCAGGTGTATGATTCTCCCCACGTGCAAATACTAGTTGGTGGAAGGAAACGGAAACGGTTAGATGCTAAGTCAATTGTCCAACTTCTTCACAGCTTTAATGCTCCCATTGGTACTACTGCATATCTGGAGCAGTCAAATCCATTTCCAAAGGATGGAAAACAGGGGTGGTGGGGTGGAGGATTTGGTTATGGATTGTGGATTGGCGTATTAGTTGGGCTAGGATTTTCTGTTGTTCCTGTGCCACCCCTTGCGTGGAAAAACAAATTTGAGCTATCGGGAAAGGATACTTCTAAGGATGACAGTCGGAGGATTGCATCTGAATTATTTCCATCTCTAACCCCACTCTTGAAGAGGAAAAAAGATCACGGGAGGGCTGATGCTTTACTCATTGCTGCTTATGGAAAAGGCTTGAAGTTGAATTCGAAAACACCATTGACTTAG MEGLPLQSHSNSFMNSLPSSKLKLKLHHFRFLCTSSFSSICSSEISTISSSSVRKDSSGKAKLAIAHAQLKDNWLASLSCPFPLGHDYSSNSSSPDRNAASECVIGVDPDVSGAVALLRTDESISSAQVYDSPHVQILVGGRKRKRLDAKSIVQLLHSFNAPIGTTAYLEQSNPFPKDGKQGWWGGGFGYGLWIGVLVGLGFSVVPVPPLAWKNKFELSGKDTSKDDSRRIASELFPSLTPLLKRKKDHGRADALLIAAYGKGLKLNSKTPLT* Homology
BLAST of CsaV3_6G038840 vs. NCBI nr
Match: XP_004140187.1 (Holliday junction resolvase MOC1, chloroplastic [Cucumis sativus] >KGN48084.1 hypothetical protein Csa_003748 [Cucumis sativus]) HSP 1 Score: 543.1 bits (1398), Expect = 1.4e-150 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. NCBI nr
Match: XP_008449639.1 (PREDICTED: uncharacterized protein LOC103491461 isoform X1 [Cucumis melo] >KAA0061758.1 uncharacterized protein E6C27_scaffold212G001360 [Cucumis melo var. makuwa] >TYJ96100.1 uncharacterized protein E5676_scaffold182G00620 [Cucumis melo var. makuwa]) HSP 1 Score: 507.7 bits (1306), Expect = 6.4e-140 Identity = 254/271 (93.73%), Postives = 264/271 (97.42%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. NCBI nr
Match: XP_022943519.1 (Holliday junction resolvase MOC1, chloroplastic [Cucurbita moschata]) HSP 1 Score: 434.9 bits (1117), Expect = 5.2e-118 Identity = 224/276 (81.16%), Postives = 243/276 (88.04%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. NCBI nr
Match: XP_023512747.1 (Holliday junction resolvase MOC1, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 433.7 bits (1114), Expect = 1.2e-117 Identity = 224/277 (80.87%), Postives = 243/277 (87.73%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. NCBI nr
Match: KAG7010304.1 (hypothetical protein SDJN02_27097 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 433.7 bits (1114), Expect = 1.2e-117 Identity = 224/277 (80.87%), Postives = 243/277 (87.73%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. ExPASy Swiss-Prot
Match: Q8GWA2 (Holliday junction resolvase MOC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MOC1 PE=1 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 1.3e-63 Identity = 123/204 (60.29%), Postives = 149/204 (73.04%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. ExPASy Swiss-Prot
Match: A8ITB0 (Holliday junction resolvase MOC1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=MOC1 PE=3 SV=2) HSP 1 Score: 77.8 bits (190), Expect = 2.1e-13 Identity = 42/102 (41.18%), Postives = 55/102 (53.92%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. ExPASy TrEMBL
Match: A0A0A0KH00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429140 PE=4 SV=1) HSP 1 Score: 543.1 bits (1398), Expect = 6.6e-151 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. ExPASy TrEMBL
Match: A0A5D3B8B8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00620 PE=4 SV=1) HSP 1 Score: 507.7 bits (1306), Expect = 3.1e-140 Identity = 254/271 (93.73%), Postives = 264/271 (97.42%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. ExPASy TrEMBL
Match: A0A1S3BMH5 (uncharacterized protein LOC103491461 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491461 PE=4 SV=1) HSP 1 Score: 507.7 bits (1306), Expect = 3.1e-140 Identity = 254/271 (93.73%), Postives = 264/271 (97.42%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. ExPASy TrEMBL
Match: A0A6J1FUK2 (Holliday junction resolvase MOC1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448269 PE=4 SV=1) HSP 1 Score: 434.9 bits (1117), Expect = 2.5e-118 Identity = 224/276 (81.16%), Postives = 243/276 (88.04%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. ExPASy TrEMBL
Match: A0A6J1JDX6 (Holliday junction resolvase MOC1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483654 PE=4 SV=1) HSP 1 Score: 427.9 bits (1099), Expect = 3.1e-116 Identity = 215/267 (80.52%), Postives = 234/267 (87.64%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. TAIR 10
Match: AT2G26840.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43910.1); Has 835 Blast hits to 835 proteins in 26 species: Archae - 0; Bacteria - 25; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 2; Other Eukaryotes - 768 (source: NCBI BLink). ) HSP 1 Score: 244.6 bits (623), Expect = 9.3e-65 Identity = 123/204 (60.29%), Postives = 149/204 (73.04%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. TAIR 10
Match: AT2G26840.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43910.1). ) HSP 1 Score: 221.1 bits (562), Expect = 1.1e-57 Identity = 121/257 (47.08%), Postives = 149/257 (57.98%), Query Frame = 0
BLAST of CsaV3_6G038840 vs. TAIR 10
Match: AT3G43910.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26840.1); Has 680 Blast hits to 680 proteins in 17 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink). ) HSP 1 Score: 99.4 bits (246), Expect = 4.9e-21 Identity = 66/178 (37.08%), Postives = 102/178 (57.30%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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