Bhi12M002243 (mRNA) Wax gourd (B227) v1

Overview
NameBhi12M002243
TypemRNA
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionUnknown protein
Locationchr12: 79284530 .. 79284682 (+)
Sequence length153
RNA-Seq ExpressionBhi12M002243
SyntenyBhi12M002243
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAATTCATTCAACAAGATCCATTCGGATCTGACCGTGATGAATTGGATTGGTCTGACCTCGTCGCTCGGATGTCAGACTCCCGCCGCCGACAGATGTCCCATGCCACGTTTCGTGAACTGCTATGCCCGAAAATGAATGAATTGTGA

mRNA sequence

ATGGATCAATTCATTCAACAAGATCCATTCGGATCTGACCGTGATGAATTGGATTGGTCTGACCTCGTCGCTCGGATGTCAGACTCCCGCCGCCGACAGATGTCCCATGCCACGTTTCGTGAACTGCTATGCCCGAAAATGAATGAATTGTGA

Coding sequence (CDS)

ATGGATCAATTCATTCAACAAGATCCATTCGGATCTGACCGTGATGAATTGGATTGGTCTGACCTCGTCGCTCGGATGTCAGACTCCCGCCGCCGACAGATGTCCCATGCCACGTTTCGTGAACTGCTATGCCCGAAAATGAATGAATTGTGA

Protein sequence

MDQFIQQDPFGSDRDELDWSDLVARMSDSRRRQMSHATFRELLCPKMNEL
Homology
[Close]
BLAST of Bhi12M002243 vs. NCBI nr
Match: KAF9660711.1 (hypothetical protein SADUNF_SadunfMtG0000400 [Salix dunnii])

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-11
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 1  MDQFIQQDPFGSDRDELDWSDLVARMSDSRRRQMSHATFRELLCPKMN 49
          MDQFIQQDPFGSD+DE D SDL     DSRRRQMSHATFRE LCP++N
Sbjct: 1  MDQFIQQDPFGSDQDEWDGSDLSLGCDDSRRRQMSHATFREQLCPRIN 48

[Close]
BLAST of Bhi12M002243 vs. NCBI nr
Match: PNT00988.1 (hypothetical protein POPTR_015G077400 [Populus trichocarpa])

HSP 1 Score: 73.6 bits (179), Expect = 5.6e-10
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 1  MDQFIQQDPFGSDRDELDWSDLVARMSDSRRRQMSHATFRELLCPKMN 49
          MDQFIQQDPFGSD+DE D SDL     DSR RQMSHATFRE LCP++N
Sbjct: 1  MDQFIQQDPFGSDQDEWDESDLSLGCDDSRCRQMSHATFREQLCPRIN 48

[Close]
BLAST of Bhi12M002243 vs. ExPASy TrEMBL
Match: A0A6N2KJR9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS71663 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 1  MDQFIQQDPFGSDRDELDWSDLVARMSDSRRRQMSHATFRELLCPKMN 49
          MDQFIQQDPFGSD+DE D SDL     DSRRRQMSHATFRE LCP++N
Sbjct: 1  MDQFIQQDPFGSDQDEWDGSDLSLGCDDSRRRQMSHATFREQLCPRIN 48

[Close]
BLAST of Bhi12M002243 vs. ExPASy TrEMBL
Match: A0A2K1XJN3 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G077400 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 1  MDQFIQQDPFGSDRDELDWSDLVARMSDSRRRQMSHATFRELLCPKMN 49
          MDQFIQQDPFGSD+DE D SDL     DSR RQMSHATFRE LCP++N
Sbjct: 1  MDQFIQQDPFGSDQDEWDESDLSLGCDDSRCRQMSHATFREQLCPRIN 48

The following BLAST results are available for this feature:
BLAST of Bhi12M002243 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi12M002243 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi12M002243 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF9660711.15.1e-1177.08hypothetical protein SADUNF_SadunfMtG0000400 [Salix dunnii][more]
PNT00988.15.6e-1075.00hypothetical protein POPTR_015G077400 [Populus trichocarpa][more]
BLAST of Bhi12M002243 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6N2KJR92.4e-1177.08Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS71663 PE=4 SV=1[more]
A0A2K1XJN32.7e-1075.00Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G077400 PE=4 ... [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi12G002243Bhi12G002243gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi12M002243.exon1Bhi12M002243.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi12M002243cds.Bhi12M002243CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi12M002243Bhi12M002243-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion