Bhi09G000520 (gene) Wax gourd (B227) v1

Overview
NameBhi09G000520
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Descriptionarabinogalactan peptide 23-like
Locationchr9: 13287842 .. 13288510 (-)
RNA-Seq ExpressionBhi09G000520
SyntenyBhi09G000520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGCCACAAGTTATAAACGGCGAAAAAGGGCCGACATAAGACTCGCTCAAACCAGTTAATTAATTTTTAACGAATTAAATTGTTAATAAAGAAAAATCCCAAAATTAGCATACTGATTTCAGCTATAAATAATCTGAATTAGCTTCATTATTCCTCAGGCAGCAATCCAACAATCTAAGGCTTCTTCGGTTCGATCGCTCTCATCTCAATCGGAAGTGAGTTTTCTGCCGAAGAAAGCCAATTCAATATAATCAATCTCATCATCCGCCATGGAAATGAAGAAGATCGCTTGCGCCGCCCTCTTTGCCGCCGCCGCCGTCAGCTCCGCTGTGGCTGCCGATGAGTCTCTTTCTCCCGCCGCTGCCCCGGGGCCGAGCAGCGCCGCCTCCGCCGCTCTCCCCGCCCTCGGATCCCTTGTCGGTGCCTCACTTGTTACCTTCGTTGCCTACTTCTTGAACTGAAGCCCCGCCTGAGAAGGAAATTTTAAGTTTATTATTATTTTTCGCTTTTTTTATGTGTTTGGTTTTTACGATTTCCATGGAGGATGTGATTTGACGTCATATATGAATGAAAAATAAGAAGAAAAAAAAAAGAATCCGGATTCATTATATTATAAATTTTTACAAATTCTGTCCTTTTAGTCTGCATTCTAATTTAATATTCACATAT

mRNA sequence

CAGCCACAAGTTATAAACGGCGAAAAAGGGCCGACATAAGACTCGCTCAAACCAGTTAATTAATTTTTAACGAATTAAATTGTTAATAAAGAAAAATCCCAAAATTAGCATACTGATTTCAGCTATAAATAATCTGAATTAGCTTCATTATTCCTCAGGCAGCAATCCAACAATCTAAGGCTTCTTCGGTTCGATCGCTCTCATCTCAATCGGAAGTGAGTTTTCTGCCGAAGAAAGCCAATTCAATATAATCAATCTCATCATCCGCCATGGAAATGAAGAAGATCGCTTGCGCCGCCCTCTTTGCCGCCGCCGCCGTCAGCTCCGCTGTGGCTGCCGATGAGTCTCTTTCTCCCGCCGCTGCCCCGGGGCCGAGCAGCGCCGCCTCCGCCGCTCTCCCCGCCCTCGGATCCCTTGTCGGTGCCTCACTTGTTACCTTCGTTGCCTACTTCTTGAACTGAAGCCCCGCCTGAGAAGGAAATTTTAAGTTTATTATTATTTTTCGCTTTTTTTATGTGTTTGGTTTTTACGATTTCCATGGAGGATGTGATTTGACGTCATATATGAATGAAAAATAAGAAGAAAAAAAAAAGAATCCGGATTCATTATATTATAAATTTTTACAAATTCTGTCCTTTTAGTCTGCATTCTAATTTAATATTCACATAT

Coding sequence (CDS)

ATGGAAATGAAGAAGATCGCTTGCGCCGCCCTCTTTGCCGCCGCCGCCGTCAGCTCCGCTGTGGCTGCCGATGAGTCTCTTTCTCCCGCCGCTGCCCCGGGGCCGAGCAGCGCCGCCTCCGCCGCTCTCCCCGCCCTCGGATCCCTTGTCGGTGCCTCACTTGTTACCTTCGTTGCCTACTTCTTGAACTGA

Protein sequence

MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAYFLN
Homology
BLAST of Bhi09G000520 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-11
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAY 60
          MEMKKIAC  LFAAA++++ +AA+E  +P  APGP+SAASAALPALGSLVGASLV+  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 FLN 64
          +L+
Sbjct: 61 YLH 61

BLAST of Bhi09G000520 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGP-SSAASAALPALGSLVGASLVTFVA 60
          MEMKKIAC  +FAAA++++ +AA+     A APGP +S AS A+PALGSLVGASLV+  A
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASLVSLFA 60

Query: 61 YFLN 64
          Y+LN
Sbjct: 61 YYLN 61

BLAST of Bhi09G000520 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-10
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAY 60
          MEMKKIAC  LFAAA++++ +AA+E  +P  APGP+SAASAALPALGSLVGASLV+  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 FLN 64
          +L+
Sbjct: 61 YLH 61

BLAST of Bhi09G000520 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAY 60
          MEMKKIACAALFAAA V++ VA+DESLSPAAAPGPSSAASAALPALGSLVGASLV+FVAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

BLAST of Bhi09G000520 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 53/63 (84.13%), Postives = 60/63 (95.24%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAY 60
          MEMKKIACAALFAAA +++ VA+DESLSPAAAPGPSSAASAALPALGSLVGASLV+FVA+
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

BLAST of Bhi09G000520 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAY 60
          MEMKKIACAALFAAA V++ VA+DESLSPAAAPGPSSAASA LPALGSLVGASLV+ VAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

BLAST of Bhi09G000520 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAY 60
          MEMK IAC ALF AAAV++ VA+DES SPAAAPGPSSAASAALPALGSL+GASLV+FVAY
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 FLN 64
           LN
Sbjct: 61 VLN 63

BLAST of Bhi09G000520 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.2e-12
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFV-A 60
          MEMKKIACAALFAAAAVS+AVAADES+SPAAAPGPSSAASAALP L    GAS+V+FV A
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 60

Query: 61 YFLN 64
          YFLN
Sbjct: 61 YFLN 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT3G57690.11.4e-1166.67arabinogalactan protein 23 [more]
AT2G41905.11.8e-0860.94BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3... [more]
Match NameE-valueIdentityDescription
Q8S2W41.9e-1066.67Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1KX421.6e-1587.30arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4... [more]
A0A6J1H8I11.0e-1484.13arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE... [more]
A0A6J1F3F52.3e-1484.13arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE... [more]
A0A6J1IYE91.5e-1382.54arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4... [more]
A0A1S3CDX56.2e-1284.38arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 1..62
NoneNo IPR availablePANTHERPTHR34672:SF2ARABINOGALACTAN PROTEIN 23coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M000520Bhi09M000520mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane