Bhi08G000010 (gene) Wax gourd (B227) v1

Overview
NameBhi08G000010
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRegulator of rDNA transcription protein 15
Locationchr8: 257585 .. 257842 (-)
RNA-Seq ExpressionBhi08G000010
SyntenyBhi08G000010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGGATGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGCTCCTTCGGGGGCCTTCCCCGGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAA

mRNA sequence

ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGGATGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGCTCCTTCGGGGGCCTTCCCCGGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAA

Coding sequence (CDS)

ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGGATGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGCTCCTTCGGGGGCCTTCCCCGGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAA

Protein sequence

MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDARAAPAARAGRRVPAGGRTGNGSFGGLPRASNSQLRTGTDKGNPTV
Homology
BLAST of Bhi08G000010 vs. ExPASy TrEMBL
Match: A0A3Q7IVA7 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.9e-25
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 0

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDARAAPAARAGRRVPAGGRTGN 60
          MEQCR+GKSAKWIRN GKRI SEGWARGSQSRTRR +   RAAPA +AG RVP  GRT N
Sbjct: 1  MEQCRKGKSAKWIRNYGKRICSEGWARGSQSRTRRWT--ERAAPAVKAGHRVPDWGRTRN 60

Query: 61 GSFGGLPRASNSQLRTGTDKGNPTV 86
          GSFGGLPR SNSQLRTGT+KGN T+
Sbjct: 61 GSFGGLPRTSNSQLRTGTNKGNLTI 83

BLAST of Bhi08G000010 vs. ExPASy TrEMBL
Match: A0A699GL51 (Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_001396 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.1e-25
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDARAAPAARAGRRVPAGGRTGN 60
          MEQCRQGKSAKWIRNLGKRIGS+GWARGSQ RTRRLS D  +   ARAGRRV  GG+T N
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSKGWARGSQFRTRRLSADCSSCSRARAGRRVSTGGQTRN 60

Query: 61 GSFGGLPRASNSQLRTG 78
          GSFGGLPRASNSQLRTG
Sbjct: 61 GSFGGLPRASNSQLRTG 77

BLAST of Bhi08G000010 vs. ExPASy TrEMBL
Match: A0A6A5L408 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00045029 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 64/81 (79.01%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 5   RQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDARAAPAARAGRRVPAGGRTGNGSFG 64
           RQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVD  +     +G RVP GGR G G  G
Sbjct: 67  RQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSRVPVGGRIGTGPSG 126

Query: 65  GLPRASNSQLRTGTDKGNPTV 86
            LPRASNS+LRTGTDKGNPTV
Sbjct: 127 PLPRASNSRLRTGTDKGNPTV 147

BLAST of Bhi08G000010 vs. ExPASy TrEMBL
Match: C6JSN6 (Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=Sb1610s002010 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.5e-24
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 0

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDARAAPAARAG-RRVPAGGRTG 60
          MEQCRQGKSAK IRN GKRIGSEGWARGS+ RTRRL  D  +     +G  R+ AGGRTG
Sbjct: 1  MEQCRQGKSAKRIRNFGKRIGSEGWARGSRPRTRRLPADCSSCSRGESGPPRLLAGGRTG 60

Query: 61 NGSFGGLPRASNSQLRTGTDKGNPTV 86
          NGSFGGLPRASN++LRTGTDKGNPTV
Sbjct: 61 NGSFGGLPRASNNRLRTGTDKGNPTV 86

BLAST of Bhi08G000010 vs. ExPASy TrEMBL
Match: A0A3L6P952 (Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PMPSC055529 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-23
Identity = 61/85 (71.76%), Postives = 66/85 (77.65%), Query Frame = 0

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDARAAPAARAGRRVPAGGRTGN 60
          MEQCRQGKSAKWIRN GKRIGSEGWARGS+ RTRRL  D  +     +G      GRTGN
Sbjct: 1  MEQCRQGKSAKWIRNFGKRIGSEGWARGSRPRTRRLPADCSSCSRGESGPPRAGRGRTGN 60

Query: 61 GSFGGLPRASNSQLRTGTDKGNPTV 86
          G  GGLPRASN++LRTGTDKGNPTV
Sbjct: 61 GPLGGLPRASNNRLRTGTDKGNPTV 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A3Q7IVA73.9e-2578.82Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
A0A699GL515.1e-2583.12Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_001396 PE=... [more]
A0A6A5L4081.1e-2479.01Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00045029 PE=4 SV=1[more]
C6JSN62.5e-2475.58Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=Sb1610s002010 PE=4 SV=1[more]
A0A3L6P9521.2e-2371.76Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PMPSC055529 PE=4 S... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..85
NoneNo IPR availablePANTHERPTHR33187:SF11WU:FI09B08coord: 1..44
NoneNo IPR availablePANTHERPTHR33187WU:FI09B08coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M000010Bhi08M000010mRNA