ChyUNG228590 (gene) Cucumber (hystrix) v1

Overview
NameChyUNG228590
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description60S ribosomal protein L18
Locationscaffold26_size3936274: 2181810 .. 2185730 (+)
RNA-Seq ExpressionChyUNG228590
SyntenyChyUNG228590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGACGTCTCAAAGTTTGTTAATCGATAATCTGGTGTAGATCTACAAGTTGATGGTGATAGAACAAGAGAAAGGGGTGTTTACATTCAGGTTTTGCACTTTTTTTTTTTTTTTTTTTATTGTCATATGCTAGTCATGTTATAATTTTGAATCTATATATTCTCTAAGCAAGGTATTTTATAGATGTGGTGAAGGACAAGAGTGGAAAAGATATTGATGTAAGTTCATGGGCACAGGAATTTGCCGAACACCTTCCCGATGAAATGCCCACAACATGTTTGATGAAATGTCTGAATGTTTTCACCCATAAAATTTCTGAGCCTAAATATAATGTTGTGTTATCACATTATTTCCCCTTTTTTAGTAGGGAATATAGTTATACACAAGCATAAGCCATAAAAGGCTTTTCTTTTTAGTTTTTTAACAAAAAAAAAGTTTCCTTTGATGATTGACTTGACCATGCTAATGCTGATCAATTTGTGATTATTCTTTTCTTTAATTTTTCTGAGGGAACTGGCTCCAAGGTTTTAAGTTTTTGTGCACATAGGCCTGTCTTGCTTCTGAGTGTGGTTCTGTTTGCAAAGAGGAGAATGATTGATTTAAACATGTATTTTTTTTTTTTGCATTTTTTGCAAGTATAAATACTTGCATGAAGATTAATATATTTCCTTCCTCTGATACAAACTATTCATATGGACTCTAAATTTATCTTCAAAAACTTAAATTTTACACTTTTTTAATTTTCATATCCAGGAGTCTTCTACTTTTTTTTATTTGTGTGCAATACGGTTAGAACTTTGTGTGTATGTGGGTTATTCTACTCATGCTGGGAATAGAAGCTTTACTTGAATAAAATTGTTCTGTTTGTCTACTTACACACTGTTTCACCTTGCTTGCATGCACTAATATAACGATTTCATGTATTTCTTATCAGCTTTACCGCTTCCTTGTCCCTCAAATTGGAAGCAATTTCAATGCTGTGATTCTCAAGCGCTTGTTTATGAGCAAGGTTAACAAGCCTCCACTTTCCCTCTCTCGGCTTATCCAGTTCACGAAAGGAAAGGTTGATCAAATCGTGTAGTATTCTAATTTTGTTTTTTTTGTATGGTTGTGAATATATGAGATATCTGAAACTTTGTACATTCGTGTGTTATATAATAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGAGTCTATGAAGTTCTAGCACTGAAAGTTGCAGCTCTGAGGTTCACCGAGACAGCAAGGGCAAGGATCGAAAAGGCTGGATGGGAATGTTTGACATTTGACCAGCATGCTTTGAGGGCTCCTCTGGGTCAGAACACTGTATGTATATTATCATTTCTTTTCAAAATTTGGTGGATAAATTTTTCATGGTGAAGTCATTACTTAGTTCATTTTTTCATTCTTAACTTGTTGCTTCACATTGGTCAAGATTGAATGCGTTAAAGAGTTTCAAACAATGATTTAGTAGTTATTTTAGGGGTTTGAATCATAACTTGGCTTCATTTGCAGGTTCTTCTTAGAGGTCCTAAGAATTCCGGAGAGGCAGTGAAGCATTTCGGTCCAGCACCTGGTTTTCCACACAGCCATTCCAAGCCATATGTGAGGTCAAAGGGAAGGAAGTTTGAGAGGGCTAGAGGAAAGAGAAACAACAGGGGATATATTGATTTGATCTTTTACTTTTTTTCCAATTCTAATTTGATGCAAGTGTGTTATTTTGAAATTCAATATCCAAATTTTGCTAGATTTTAGTTGCATATCATTTATTCCATTTCTTACGGTTTTTGCCATAATATTGTTGATTATGAATTTGATTAAATGTTATTCAGCGGGACTTCATAGAGTTTCTTTGCTAGATTTTTGTGATTACCATTTTTTGTTCTGTTCATTTGAGTATCTAAAAAATCAAACAAGTAGGTTGTAAAATTGTCCTAAATTTGCAGTAGTGCTTTGCTCGATGTTCTATCTATATGTAGAGGTCTTGTTCTATTAAATGCTTATACTGATTTATTTGTCAAATGTCAATATCTTAATGTTTCTGTTTTTGGTGGTCTCTTCATCTGTAGTTGGAGTGGAAGTAAGAAAGCAATACTACAACAAGAAGAGCAAGCCTCAGAAGCAAAATGGTTCTAATTTGAATATTTCATATTTATGTAGTCTTCTACTTTAGATTGACAATCTAAAACTATAAAATACCAAGCGAACTGACTTTAATGTAGTGTTTATTTATGGTATTTGCTGATGAGAGTTCGATAATTATGTGTATGATAACCATTAAAGTATAGAATAGAAGTATCATGCATCATTTTATGACTTGGTAATTGGTAAGTATGCCCATCACATTATTGTTTCATTGAATACTTGATCTACACATTATTGGTAAGTATAACTTGGGGTTTGTAGGCTACTTTGGTTGATTCCTTTCTTGCAGATATCTTGATGAACTCTCTGATGAAGACAAGTTTCAGGTTTGTAAAGGCTTTTTACTTCTCCGTGTAAATGAAGTAATAATTATGTTGGTTGTTATGTAAGTGAAGTCTTTAATTTGTTTGGTTTATTCGGTGACTTTAATTTGTTTGGTTAATTTGATGGCTTTAATTGTTGTAATGTTTATAAGATTTGACCTTAAGCTTAGTTTTGTAGCTATATTTTTAAGTTCTTACTATAGCAAATAACTTTTTGTTTGTGTTCTTCTTGTGGTTTTGTTTCAGCTTCCTCAAGATATTGAATGGCATTTCATTGGGCATTTGCAGAGCAACAAAGTTAAATTGCTTCTTTGTACAATCCCTTCCATATTCTAACCATTGAATGCAGGTTTGCTTGTTATGTATTTTGTTCCATAAATGCATCAACTCTATTTCTTCCATTGATGCTTCCAATTTTGTTAGTTGACTATCTATCAATCTTCTTTCCACGAAAAATGAAGTAATGATCAGATATAAATGAGTATTATGAGATTTTTCATTTTTGTCAATGAAATTATGCAAACTGAATCTGAAGTCCAATGCAACGATAACTTGTTCTTCCAAAAATAGGAATATTCTAGAGAACAATTTTTTAATTTTGGTCAATTAGGATTGCTTGATATAAACCTACAGTGGTTTATACTTTGCTTAACAAATTTTTTTATTACTTGATTTTGTTCTTATTTACTATTATTTACCTTGGAAATGCTTCTGGACTTGCACTTGAATGTTCATCTAACTAATATTCATATTCCATGTGCAATTGATGTAACATTTCCTTAACTTCCATGTTCTGTTCTTAGTCTTCATACTATGGACATTAGAAGAGAGCAACACCTTGATGTGGTATGACATCCCTAAATTCGAAATGTAAATGATGTTTCCATATCATTTGGTTCTCCATGCAAGAAAATTCACAGATAAACAGTCCTTGGCACTTAGGACCCTTTGGTTAAATTTCATTTTAATGTCTTTTAATTATGCATTCATGAGTTGAACTACAAACACATTTCATACTTGTGTTTTTCATCCCACCGATACTTCTGTTTTACCGTATTAAGAGAGAATGTTTGAGTTGAGTTGACTCATATTCTACCGTTGTTTATTTTTCTGAAAGATATGCTCGAGTGCCAAACGTATATTTAGTGAACTCCATGAAAAAACCTTTTGTTGTGGAGCTTGATCTTCGAGGTATTTATTCTGTTTAATTTTGTTGATCATTTCCAATATTAATAATTGTTTGAAGAACCATTTTTATGACCTTGAAAATGTCATGATCTTGGGATTTGTATAATTTTGTTCGGTTGCTAGTGGAAAGGGAATAATGATCTTAAGCTTTCAAGGCCAGGAATTGAAAACCCATTTTTTTTGGAAGGCTCTCTTTGATGGTTTTGTTTATGTTTTTTCTTTGTCCAGCTCGGGTTACAAAATAG

mRNA sequence

ATGTTGACGTCTCAAAATGTGGTGAAGGACAAGAGTGGAAAAGATATTGATGTAAGTTCATGGGCACAGGAATTTGCCGAACACCTTCCCGATGAAATGCCCACAACATGTTTGATGAAATGTCTGAATCTTTACCGCTTCCTTGTCCCTCAAATTGGAAGCAATTTCAATGCTGTGATTCTCAAGCGCTTGTTTATGAGCAAGGTTAACAAGCCTCCACTTTCCCTCTCTCGGCTTATCCAGTTCACGAAAGGAAAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGAGTCTATGAAGTTCTAGCACTGAAAGTTGCAGCTCTGAGGTTCACCGAGACAGCAAGGGCAAGGATCGAAAAGGCTGGATGGGAATGTTTGACATTTGACCAGCATGCTTTGAGGGCTCCTCTGGGTCAGAACACTGTTCTTCTTAGAGGTCCTAAGAATTCCGGAGAGGCAGTGAAGCATTTCGGTCCAGCACCTGGTTTTCCACACAGCCATTCCAAGCCATATGTGAGATATGCTCGAGTGCCAAACGTATATTTAGTGAACTCCATGAAAAAACCTTTTGTTGTGGAGCTTGATCTTCGAGCTCGGGTTACAAAATAG

Coding sequence (CDS)

ATGTTGACGTCTCAAAATGTGGTGAAGGACAAGAGTGGAAAAGATATTGATGTAAGTTCATGGGCACAGGAATTTGCCGAACACCTTCCCGATGAAATGCCCACAACATGTTTGATGAAATGTCTGAATCTTTACCGCTTCCTTGTCCCTCAAATTGGAAGCAATTTCAATGCTGTGATTCTCAAGCGCTTGTTTATGAGCAAGGTTAACAAGCCTCCACTTTCCCTCTCTCGGCTTATCCAGTTCACGAAAGGAAAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGAGTCTATGAAGTTCTAGCACTGAAAGTTGCAGCTCTGAGGTTCACCGAGACAGCAAGGGCAAGGATCGAAAAGGCTGGATGGGAATGTTTGACATTTGACCAGCATGCTTTGAGGGCTCCTCTGGGTCAGAACACTGTTCTTCTTAGAGGTCCTAAGAATTCCGGAGAGGCAGTGAAGCATTTCGGTCCAGCACCTGGTTTTCCACACAGCCATTCCAAGCCATATGTGAGATATGCTCGAGTGCCAAACGTATATTTAGTGAACTCCATGAAAAAACCTTTTGTTGTGGAGCTTGATCTTCGAGCTCGGGTTACAAAATAG

Protein sequence

MLTSQNVVKDKSGKDIDVSSWAQEFAEHLPDEMPTTCLMKCLNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVKHFGPAPGFPHSHSKPYVRYARVPNVYLVNSMKKPFVVELDLRARVTK*
Homology
[Close]
BLAST of ChyUNG228590 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-56
Identity = 112/138 (81.16%), Postives = 121/138 (87.68%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV +  S FN VILKRLFMSKVNK PLSLSRL++F  GKE KIAV+VGTITDD+
Sbjct: 30  VKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDL 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RV+E+ A+KV ALRFTE ARARIEKAG ECLTFDQ ALRAPLGQNTVLLRGPKNS EAVK
Sbjct: 90  RVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVR 180
           HFGPAPG PHSHSKPYVR
Sbjct: 150 HFGPAPGVPHSHSKPYVR 167

[Close]
BLAST of ChyUNG228590 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.5e-56
Identity = 111/139 (79.86%), Postives = 124/139 (89.21%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV +  SNFNAVILKRLFMSKVNK PLSLSRL++F  GK+ KIAV+VGTITDD+
Sbjct: 30  VKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDL 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RV+E+ A+KV ALRFTE ARARIEKAG ECLTFDQ ALRAPLGQNTVLLRGPKNS EAVK
Sbjct: 90  RVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVRY 181
           HFGPAPG PHS++KPYVR+
Sbjct: 150 HFGPAPGVPHSNTKPYVRH 168

[Close]
BLAST of ChyUNG228590 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.0e-52
Identity = 106/138 (76.81%), Postives = 120/138 (86.96%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV +  SNFNAVILKRLFMSKVN+PPLSLSRLI++ +GKE KI VVVG +TDDI
Sbjct: 27  VKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDI 86

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RVY+V  +KV AL+FTETARARI+KAG ECLTFDQ ALR PL  +TVLLRGPKN+ EAVK
Sbjct: 87  RVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVK 146

Query: 162 HFGPAPGFPHSHSKPYVR 180
           HFGPAPG PHSH+KPYVR
Sbjct: 147 HFGPAPGVPHSHTKPYVR 163

[Close]
BLAST of ChyUNG228590 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 191.8 bits (486), Expect = 7.7e-48
Identity = 98/135 (72.59%), Postives = 113/135 (83.70%), Query Frame = 0 

Query: 46  RFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYE 105
           R+LV +  S FNAVILKRLFMSKVNK PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +
Sbjct: 34  RYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIED 93

Query: 106 VLALKVAALRFTETARARIEKAGWECLTFDQHALRAPL-GQNTVLLRGPKNSGEAVKHFG 165
           V AL V ALRFTE+ARARI KAG ECLTFDQ AL  P   +NTVLLRGPKN+ EAVKHFG
Sbjct: 94  VPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFG 153

Query: 166 PAPGFPHSHSKPYVR 180
           PAPG PHSH+KPYVR
Sbjct: 154 PAPGVPHSHTKPYVR 168

[Close]
BLAST of ChyUNG228590 vs. ExPASy Swiss-Prot
Match: Q4PM04 (60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.7e-43
Identity = 86/140 (61.43%), Postives = 114/140 (81.43%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTK--GKESKIAVVVGTITD 101
           + +YRFL  + G+ FN ++LKRLFMS++NKP +SL+R+ +F K  G+E+ IAVVVGT+TD
Sbjct: 29  VKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTD 88

Query: 102 DIRVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEA 161
           D+R+Y+V  L++ ALR TE ARARI KAG E LTFDQ A++AP G+ TVL++GP+NS EA
Sbjct: 89  DLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREA 148

Query: 162 VKHFGPAPGFPHSHSKPYVR 180
            +HFGPAPG PHSH+KPYVR
Sbjct: 149 CRHFGPAPGVPHSHTKPYVR 168

[Close]
BLAST of ChyUNG228590 vs. ExPASy TrEMBL
Match: A0A0A0LWD1 (Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569250 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 9.7e-62
Identity = 128/138 (92.75%), Postives = 130/138 (94.20%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV + GSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI
Sbjct: 87  VKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 146

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RVYEV ALKVAALRFTETARARIEKAG ECLTFDQ ALRAPLGQNTVLLRGPKNS EAVK
Sbjct: 147 RVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVK 206

Query: 162 HFGPAPGFPHSHSKPYVR 180
           HFGPAPG PHSHSKPYVR
Sbjct: 207 HFGPAPGVPHSHSKPYVR 224

[Close]
BLAST of ChyUNG228590 vs. ExPASy TrEMBL
Match: A0A5A7U942 (60S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004150 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.8e-61
Identity = 127/138 (92.03%), Postives = 129/138 (93.48%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV + GSNFNAVILKRLFMSKVNKPPLSLSRLIQF KGKESKIAVVVGTITDDI
Sbjct: 30  VKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDI 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RVYEV ALKVAALRFTETARARIEKAG ECLTFDQ ALRAPLGQNTVLLRGPKNS EAVK
Sbjct: 90  RVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVR 180
           HFGPAPG PHSHSKPYVR
Sbjct: 150 HFGPAPGVPHSHSKPYVR 167

[Close]
BLAST of ChyUNG228590 vs. ExPASy TrEMBL
Match: A0A1S3BPL9 (60S ribosomal protein L18-2 OS=Cucumis melo OX=3656 GN=LOC103492145 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.8e-61
Identity = 127/138 (92.03%), Postives = 129/138 (93.48%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV + GSNFNAVILKRLFMSKVNKPPLSLSRLIQF KGKESKIAVVVGTITDDI
Sbjct: 30  VKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDI 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RVYEV ALKVAALRFTETARARIEKAG ECLTFDQ ALRAPLGQNTVLLRGPKNS EAVK
Sbjct: 90  RVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVR 180
           HFGPAPG PHSHSKPYVR
Sbjct: 150 HFGPAPGVPHSHSKPYVR 167

[Close]
BLAST of ChyUNG228590 vs. ExPASy TrEMBL
Match: A0A444YJV3 (Ribosomal_L18e/L15P domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B06g081003 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 3.1e-60
Identity = 130/176 (73.86%), Postives = 140/176 (79.55%), Query Frame = 0 

Query: 4   SQNVVKDKSGKDIDVSSWAQEFAEHLPDEMPTTCLMKCLNLYRFLVPQIGSNFNAVILKR 63
           +QN  K   G DI     +++     P +     L   + LYRFLV + GSNFNAVILKR
Sbjct: 68  TQNTAKAAMGIDIKAGGKSKKTKRTAP-KSNDIYLKLLVKLYRFLVRRTGSNFNAVILKR 127

Query: 64  LFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVLALKVAALRFTETARAR 123
           LFMSKVNKPPLSLSRLI+F KGKE KIAVVVGT+TDDIRVYEV ALKV ALRFTETARAR
Sbjct: 128 LFMSKVNKPPLSLSRLIKFMKGKEGKIAVVVGTVTDDIRVYEVPALKVTALRFTETARAR 187

Query: 124 IEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVKHFGPAPGFPHSHSKPYVR 180
           IEKAG ECLTFDQ ALRAPLGQNTVLLRGPKNS EAVKHFGPAPG PHSH+KPYVR
Sbjct: 188 IEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR 242

[Close]
BLAST of ChyUNG228590 vs. ExPASy TrEMBL
Match: A0A6J1HVV8 (60S ribosomal protein L18-2-like OS=Cucurbita maxima OX=3661 GN=LOC111467927 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 9.1e-60
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV + GS FNAVILKRLFMS+VNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI
Sbjct: 30  VKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RVYEV ALKVAALRFTETARARIEKAG ECLTFDQ ALRAPLGQNTVLLRG KNS EAVK
Sbjct: 90  RVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVR 180
           HFGPAPG PHSHSKPYVR
Sbjct: 150 HFGPAPGVPHSHSKPYVR 167

[Close]
BLAST of ChyUNG228590 vs. NCBI nr
Match: XP_011659839.1 (60S ribosomal protein L18-2 [Cucumis sativus] >KAE8653364.1 hypothetical protein Csa_007522 [Cucumis sativus])

HSP 1 Score: 244 bits (622), Expect = 8.20e-79
Identity = 128/138 (92.75%), Postives = 130/138 (94.20%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV + GSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI
Sbjct: 30  VKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RVYEV ALKVAALRFTETARARIEKAG ECLTFDQ ALRAPLGQNTVLLRGPKNS EAVK
Sbjct: 90  RVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVR 179
           HFGPAPG PHSHSKPYVR
Sbjct: 150 HFGPAPGVPHSHSKPYVR 167

[Close]
BLAST of ChyUNG228590 vs. NCBI nr
Match: XP_008450608.1 (PREDICTED: 60S ribosomal protein L18-2 [Cucumis melo] >KAA0050917.1 60S ribosomal protein L18-2 [Cucumis melo var. makuwa] >TYK10265.1 60S ribosomal protein L18-2 [Cucumis melo var. makuwa])

HSP 1 Score: 241 bits (616), Expect = 6.70e-78
Identity = 127/138 (92.03%), Postives = 129/138 (93.48%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV + GSNFNAVILKRLFMSKVNKPPLSLSRLIQF KGKESKIAVVVGTITDDI
Sbjct: 30  VKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDI 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RVYEV ALKVAALRFTETARARIEKAG ECLTFDQ ALRAPLGQNTVLLRGPKNS EAVK
Sbjct: 90  RVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVR 179
           HFGPAPG PHSHSKPYVR
Sbjct: 150 HFGPAPGVPHSHSKPYVR 167

[Close]
BLAST of ChyUNG228590 vs. NCBI nr
Match: XP_038887726.1 (60S ribosomal protein L18-2-like [Benincasa hispida])

HSP 1 Score: 239 bits (611), Expect = 3.86e-77
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV + GSNFNAVILKRLFMSKVNKPPLSLSRLIQF KGKESKIAVVVGTITDD 
Sbjct: 30  VKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDT 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RVYEV ALKVAALRFTETARARIEKAG ECLTFDQ ALRAPLGQNTVLLRGPKNS EAVK
Sbjct: 90  RVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVR 179
           HFGPAPG PHSHSKPYVR
Sbjct: 150 HFGPAPGVPHSHSKPYVR 167

[Close]
BLAST of ChyUNG228590 vs. NCBI nr
Match: XP_022968796.1 (60S ribosomal protein L18-2-like [Cucurbita maxima] >XP_023515957.1 60S ribosomal protein L18-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237 bits (605), Expect = 3.15e-76
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV + GS FNAVILKRLFMS+VNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI
Sbjct: 30  VKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RVYEV ALKVAALRFTETARARIEKAG ECLTFDQ ALRAPLGQNTVLLRG KNS EAVK
Sbjct: 90  RVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVR 179
           HFGPAPG PHSHSKPYVR
Sbjct: 150 HFGPAPGVPHSHSKPYVR 167

[Close]
BLAST of ChyUNG228590 vs. NCBI nr
Match: XP_022931687.1 (60S ribosomal protein L18-2-like [Cucurbita moschata])

HSP 1 Score: 237 bits (605), Expect = 3.15e-76
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV + GSNFNAVILKRLFMS+VNKPPLSLSRLIQF KGKESKIAVVVGTITDDI
Sbjct: 30  VKLYRFLVRRTGSNFNAVILKRLFMSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDI 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RVYEV ALKVAALRFTETARARIEKAG ECLTFDQ ALRAPLGQNTVLLRG KNS EAVK
Sbjct: 90  RVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVR 179
           HFGPAPG PHSHSKPYVR
Sbjct: 150 HFGPAPGVPHSHSKPYVR 167

[Close]
BLAST of ChyUNG228590 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-57
Identity = 112/138 (81.16%), Postives = 121/138 (87.68%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV +  S FN VILKRLFMSKVNK PLSLSRL++F  GKE KIAV+VGTITDD+
Sbjct: 30  VKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDL 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RV+E+ A+KV ALRFTE ARARIEKAG ECLTFDQ ALRAPLGQNTVLLRGPKNS EAVK
Sbjct: 90  RVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVR 180
           HFGPAPG PHSHSKPYVR
Sbjct: 150 HFGPAPGVPHSHSKPYVR 167

[Close]
BLAST of ChyUNG228590 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-57
Identity = 111/139 (79.86%), Postives = 124/139 (89.21%), Query Frame = 0 

Query: 42  LNLYRFLVPQIGSNFNAVILKRLFMSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDI 101
           + LYRFLV +  SNFNAVILKRLFMSKVNK PLSLSRL++F  GK+ KIAV+VGTITDD+
Sbjct: 30  VKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDL 89

Query: 102 RVYEVLALKVAALRFTETARARIEKAGWECLTFDQHALRAPLGQNTVLLRGPKNSGEAVK 161
           RV+E+ A+KV ALRFTE ARARIEKAG ECLTFDQ ALRAPLGQNTVLLRGPKNS EAVK
Sbjct: 90  RVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVK 149

Query: 162 HFGPAPGFPHSHSKPYVRY 181
           HFGPAPG PHS++KPYVR+
Sbjct: 150 HFGPAPGVPHSNTKPYVRH 168

[Close]
BLAST of ChyUNG228590 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-41
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 0 

Query: 66  MSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVLALKVAALRFTETARARIE 125
           MSKVNK PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +V AL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 126 KAGWECLTFDQHALRAPL-GQNTVLLRGPKNSGEAVKHFGPAPGFPHSHSKPYVR 180
           KAG ECLTFDQ AL  P   +NTVLLRGPKN+ EAVKHFGPAPG PHSH+KPYVR
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVR 115

[Close]
BLAST of ChyUNG228590 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-41
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 0 

Query: 66  MSKVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVLALKVAALRFTETARARIE 125
           MSKVNK PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +V AL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 126 KAGWECLTFDQHALRAPL-GQNTVLLRGPKNSGEAVKHFGPAPGFPHSHSKPYVR 180
           KAG ECLTFDQ AL  P   +NTVLLRGPKN+ EAVKHFGPAPG PHSH+KPYVR
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVR 115

The following BLAST results are available for this feature:
BLAST of ChyUNG228590 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427911.6e-5681.1660S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2[more]
Q940B03.5e-5679.8660S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1[more]
O657291.0e-5276.8160S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV... [more]
O222547.7e-4872.59Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P... [more]
Q4PM045.7e-4361.4360S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1[more]
BLAST of ChyUNG228590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWD19.7e-6292.75Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_... [more]
A0A5A7U9424.8e-6192.0360S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A1S3BPL94.8e-6192.0360S ribosomal protein L18-2 OS=Cucumis melo OX=3656 GN=LOC103492145 PE=3 SV=1[more]
A0A444YJV33.1e-6073.86Ribosomal_L18e/L15P domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy... [more]
A0A6J1HVV89.1e-6090.5860S ribosomal protein L18-2-like OS=Cucurbita maxima OX=3661 GN=LOC111467927 PE=... [more]
BLAST of ChyUNG228590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659839.18.20e-7992.7560S ribosomal protein L18-2 [Cucumis sativus] >KAE8653364.1 hypothetical protein... [more]
XP_008450608.16.70e-7892.03PREDICTED: 60S ribosomal protein L18-2 [Cucumis melo] >KAA0050917.1 60S ribosoma... [more]
XP_038887726.13.86e-7791.3060S ribosomal protein L18-2-like [Benincasa hispida][more]
XP_022968796.13.15e-7690.5860S ribosomal protein L18-2-like [Cucurbita maxima] >XP_023515957.1 60S ribosoma... [more]
XP_022931687.13.15e-7690.5860S ribosomal protein L18-2-like [Cucurbita moschata][more]
BLAST of ChyUNG228590 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05590.11.1e-5781.16ribosomal protein L18 [more]
AT5G27850.12.5e-5779.86Ribosomal protein L18e/L15 superfamily protein [more]
AT2G47570.11.1e-4173.04Ribosomal protein L18e/L15 superfamily protein [more]
AT2G47570.21.1e-4173.04Ribosomal protein L18e/L15 superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021131Ribosomal protein L18e/L15PPFAMPF17135Ribosomal_L18coord: 42..179
e-value: 1.3E-62
score: 210.6
NoneNo IPR availableGENE3D3.100.10.10coord: 32..183
e-value: 1.8E-63
score: 215.3
NoneNo IPR availablePANTHERPTHR10934:SF1960S RIBOSOMAL PROTEIN L18-1-RELATEDcoord: 41..180
IPR000039Ribosomal protein L18ePANTHERPTHR1093460S RIBOSOMAL PROTEIN L18coord: 41..180
IPR036227Ribosomal L18e/L15P superfamilySUPERFAMILY52080Ribosomal proteins L15p and L18ecoord: 38..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ChyUNG228590.1ChyUNG228590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome