Chy12G217970 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G217970
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	30S ribosomal protein S21, chloroplastic-like
Location	chrH12: 16755796 .. 16757064 (-)
RNA-Seq Expression	Chy12G217970
Synteny	Chy12G217970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACACCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCCAGAACCTAAGGGTGTTTCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGGACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGGTTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGGTTAGTTGATCTCATTTCTAAAGCAAAATCAGATGAGTTGTTCATGGCTGAATTTGGTTTCTGTGAGATTTTGTTGTTTTTGAATGGTCTGCTTTCTTTCATTTTCTTTGCAACCAAATATTGGATTTCGATATCAACTTCTTAACTGTCTCCCTCTTTCAAATGCTGAATACAAATCTTGGGGTTCATTGATCCATGAGCACCACTATTGTTCTTCTTGATTTCATTTTCCCCTCTTCCTTTTTAAATCTTCCTTAACATTTTCTAGAACTCAGAAGCCAGCTTCAGATTGATCAATATCAATTCAAAGAATTAGTCTACTCAAAATTTCTTCCATTTTAGTGGGAGAGGGAAACAGGGGATAGTAAAGATTGTTCAATTACAGGTTGAAGCTTGAGTAAAAGTTATCATAAAAAATAGAAACTAGATGGTTGAAAATATCTGAAATTAGCTGTGAAGAAACAGCTTAAACTGAAAGATGCTGCCTGGTTACAATACAAGGTGACCCATGATTAGCATTGAGGTTATTGGTAAAGAAGGCCACTTCTTGCGGGTTGTGTTGCTTGCAGCAAGCATCCCAAATTGTTGTGACTTGATTGAATCTGTCTCAACTCTCCTTGGGTTCTGTGTTTTAAAAAAAAATGAAGAATAGGAAAAATGTAGATTATCATTCAGCTCATTCTCATTGTAGATTCAGATTTTTGTGTTTCCATGTTTTAATGCAAACAATTGTTTAAAGTATATGTGATTCTCCAACTGCAGAAGGTTTAGGCGGCCTCAATCAATAACTGAGGAGCAGCCAGACCGGAAAACCCCTGAGAGTAAGAACAGAAATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAA

mRNA sequence

ATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACACCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCCAGAACCTAAGGGTGTTTCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGGACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGGTTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGAAGGTTTAGGCGGCCTCAATCAATAACTGAGGAGCAGCCAGACCGGAAAACCCCTGAGAGTAAGAACAGAAATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAA

Coding sequence (CDS)

ATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACACCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCCAGAACCTAAGGGTGTTTCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGGACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGGTTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGAAGGTTTAGGCGGCCTCAATCAATAACTGAGGAGCAGCCAGACCGGAAAACCCCTGAGAGTAAGAACAGAAATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAA

Protein sequence

MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSPEPKGVSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITEEQPDRKTPESKNRNEEDDNWDFYQVDLPYSP*

Homology

[Close]

BLAST of Chy12G217970 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-14
Identity = 65/185 (35.14%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 4   AATSSITNFFSFLSISKSS---------------QIHHNSVSINLQSLPNSKLTRLFASR 63
           A+TSS+ NF S L  S +S                   NS+SI+ +   N+ + +     
Sbjct: 2   ASTSSLLNFLSPLFPSNTSLPPSSNPKFPNPNSLSSQQNSISISSKKHENAAIAKKEEYP 61

Query: 64  GNVASSSPEPKGVSLRIL---NYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRF 123
           G++ +        S  +     YN+ + V ++E+E++++NRFRR+V+RAG++QECKRRR+
Sbjct: 62  GDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQECKRRRY 121

Query: 124 FENSQAKRKRKAREAAKRNRKRR---FRRPQSITEEQPDRKTPESKNRNEED-DNWDFYQ 167
           FEN Q ++KRK REAAKRN +RR   FR P       P ++     ++ E+D DNWD  +
Sbjct: 122 FENKQEEKKRKHREAAKRNSRRRRGPFRGP------FPGKEEATKVDKKEDDGDNWDMPE 180

[Close]

BLAST of Chy12G217970 vs. ExPASy Swiss-Prot
Match: Q8RB59 (30S ribosomal protein S21 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsU PE=3 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 72  ITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK 127
           + VGE+ES D  + RFRRQ  +AG+L E ++R  +E+   KRK+KA  A KR  K
Sbjct: 4   VRVGENESLDSALRRFRRQCSKAGVLSELRKREHYESPSVKRKKKAEAARKRKYK 58

[Close]

BLAST of Chy12G217970 vs. ExPASy Swiss-Prot
Match: Q7NHA1 (30S ribosomal protein S21 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=rpsU2 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 72  ITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNR 126
           + +GE+ES +  + RF++++ +AGIL E KRR  +E   A+RKRKA  A KR R
Sbjct: 4   VRLGENESIESALKRFKKKIQKAGILSEIKRRERYEKPSARRKRKAEAARKRRR 57

[Close]

BLAST of Chy12G217970 vs. ExPASy Swiss-Prot
Match: B0CE36 (30S ribosomal protein S21 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpsU PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 70  ILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRF 129
           + + +GEDE  +  + RF+RQV +AGIL + KRRR FE    K+KRK R A +  RKRRF
Sbjct: 2   VQVVLGEDEGIESALRRFKRQVSKAGILADVKRRRHFETPLEKKKRK-RIATR--RKRRF 59

Query: 130 R 131
           R
Sbjct: 62  R 59

[Close]

BLAST of Chy12G217970 vs. ExPASy Swiss-Prot
Match: Q1WU25 (30S ribosomal protein S21 OS=Lactobacillus salivarius (strain UCC118) OX=362948 GN=rpsU PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.2e-04
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 74  VGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRF 130
           V ++ES D  + RF+R V + G LQE ++R F+E    KRK+K+  A KR  KRRF
Sbjct: 6   VRKNESLDDALRRFKRSVSKTGTLQEYRKREFYEKPSVKRKKKSEAARKRKNKRRF 61

[Close]

BLAST of Chy12G217970 vs. ExPASy TrEMBL
Match: A0A0A0LWJ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.9e-77
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSPEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSS EPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           V LRILNYNILITVGE+ESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSITEEQPDRKTPESKNRNEEDDNWDFYQVDLPYSP 169
           AKRNRKRRFRRPQSIT EQPD+KTPESKNR+EEDDNWDFYQVDLPYSP
Sbjct: 121 AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP 168

[Close]

BLAST of Chy12G217970 vs. ExPASy TrEMBL
Match: E5GBW8 (Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.5e-73
Identity = 154/167 (92.22%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSPEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSS EPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VS RILNYN+LITVGE+ESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSITEEQPDRKTPESKNRNEEDDNWDFYQVDLPYS 168
           AKRNRKRRFRRPQS TE+QPD+KTPESKN++EEDDNWDFYQVDLPYS
Sbjct: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYS 167

[Close]

BLAST of Chy12G217970 vs. ExPASy TrEMBL
Match: A0A1S3AZ70 (uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.5e-73
Identity = 154/167 (92.22%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSPEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSS EPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VS RILNYN+LITVGE+ESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSITEEQPDRKTPESKNRNEEDDNWDFYQVDLPYS 168
           AKRNRKRRFRRPQS TE+QPD+KTPESKN++EEDDNWDFYQVDLPYS
Sbjct: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYS 167

[Close]

BLAST of Chy12G217970 vs. ExPASy TrEMBL
Match: A0A5A7UHJ6 (Ribosomal_S21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001450 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.0e-66
Identity = 154/216 (71.30%), Postives = 160/216 (74.07%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSPEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSS EPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VS RILNYN+LITVGE+ESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKR-------------------------------------------------RFRR 168
           AKRNRKR                                                 RFRR
Sbjct: 121 AKRNRKRLADLISKEKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRR 180

[Close]

BLAST of Chy12G217970 vs. ExPASy TrEMBL
Match: A0A5D3BJF5 (Putative Ribosomal protein S21 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004370 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.0e-66
Identity = 154/216 (71.30%), Postives = 160/216 (74.07%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSPEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSS EPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VS RILNYN+LITVGE+ESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKR-------------------------------------------------RFRR 168
           AKRNRKR                                                 RFRR
Sbjct: 121 AKRNRKRLADLISKAKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRR 180

[Close]

BLAST of Chy12G217970 vs. NCBI nr
Match: XP_004152510.2 (30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN64376.1 hypothetical protein Csa_014065 [Cucumis sativus])

HSP 1 Score: 295 bits (756), Expect = 3.52e-100
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSPEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSS EPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           V LRILNYNILITVGE+ESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSITEEQPDRKTPESKNRNEEDDNWDFYQVDLPYSP 168
           AKRNRKRRFRRPQSIT EQPD+KTPESKNR+EEDDNWDFYQVDLPYSP
Sbjct: 121 AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP 168

[Close]

BLAST of Chy12G217970 vs. NCBI nr
Match: XP_008439325.1 (PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 structural constituent of ribosome [Cucumis melo subsp. melo])

HSP 1 Score: 282 bits (721), Expect = 7.61e-95
Identity = 154/167 (92.22%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSPEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSS EPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VS RILNYN+LITVGE+ESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSITEEQPDRKTPESKNRNEEDDNWDFYQVDLPYS 167
           AKRNRKRRFRRPQS TE+QPD+KTPESKN++EEDDNWDFYQVDLPYS
Sbjct: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYS 167

[Close]

BLAST of Chy12G217970 vs. NCBI nr
Match: KAA0055302.1 (Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (661), Expect = 5.52e-85
Identity = 154/216 (71.30%), Postives = 160/216 (74.07%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSPEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSS EPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VS RILNYN+LITVGE+ESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKR-------------------------------------------------RFRR 167
           AKRNRKR                                                 RFRR
Sbjct: 121 AKRNRKRLADLISKEKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRR 180

[Close]

BLAST of Chy12G217970 vs. NCBI nr
Match: TYJ99226.1 (putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (661), Expect = 5.52e-85
Identity = 154/216 (71.30%), Postives = 160/216 (74.07%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSPEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSS EPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VS RILNYN+LITVGE+ESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKR-------------------------------------------------RFRR 167
           AKRNRKR                                                 RFRR
Sbjct: 121 AKRNRKRLADLISKAKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRR 180

[Close]

BLAST of Chy12G217970 vs. NCBI nr
Match: XP_038894121.1 (30S ribosomal protein S21, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 248 bits (633), Expect = 1.94e-81
Identity = 138/166 (83.13%), Postives = 149/166 (89.76%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSPEPKG 60
           MAAAATSS+T FFS LSISKSSQIHHNSVSINLQSLP SK  RLFA+RG+V  SS EPKG
Sbjct: 1   MAAAATSSLTKFFSSLSISKSSQIHHNSVSINLQSLPKSKPARLFATRGSVTPSSQEPKG 60

Query: 61  VSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           V   +  YN+LITVGE+ESEDQ+VNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VFSGMRIYNVLITVGENESEDQLVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSITEEQPDRKTPESKNRNEEDDNWDFYQVDLPY 166
           AKRNRKR FRRPQS  EEQP++KTP+ KNR+EEDDNWDFYQVDLPY
Sbjct: 121 AKRNRKRWFRRPQSRAEEQPNKKTPQRKNRDEEDDNWDFYQVDLPY 166

[Close]

BLAST of Chy12G217970 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 87.8 bits (216), Expect = 9.0e-18
Identity = 64/181 (35.36%), Postives = 102/181 (56.35%), Query Frame = 0


Query: 4   AATSSITNFFSFLSISKS-----------------SQIHHNSVSINLQSL--PNSKLTRL 63
           AA+ S+T+F SF+S  KS                 SQ   N ++I   ++   +S  + L
Sbjct: 2   AASFSLTSFISFISPFKSQTKPTPPPNLTLPSPTISQRRRNDLAIESMAVEETSSTASSL 61

Query: 64  FASRGNVASSSPEPKGVSLRILNYNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRR 123
            +   +V   S            YN+ + V ++ESE+++VNRFRR+V+R G++QECKRRR
Sbjct: 62  SSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKRRR 121

Query: 124 FFENSQAKRKRKAREAAKRNRKRRFRRPQSITEEQPDRKTPESKNRNEEDDNWDFYQVDL 166
           +FEN Q ++KR+ R+AAKRN+KRR +   +    +      +SK ++EE+DNW+    D+
Sbjct: 122 YFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEMPGGDV 181

[Close]

BLAST of Chy12G217970 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 41/103 (39.81%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 68  YNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 127
           YN+ +   + ESE+Q+VN F+R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKR
Sbjct: 80  YNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRRFFESSLEKKTRKTKEAAKKYRKR 139

Query: 128 RFR-RPQSITEEQPDRKTPESKNRNEEDDNWDF--YQVDLPYS 168
           R   +P+ ++  +  +    +   +E+DD+W+     +++PY+
Sbjct: 140 RPNPKPKPLSTSEIRKHNRNASREDEQDDHWELPPEDIEIPYT 182

[Close]

BLAST of Chy12G217970 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-10
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 68  YNILITVGEDESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 127
           YN+ +   + ESE+Q+VN F+R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKR
Sbjct: 80  YNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRRFFESSLEKKTRKTKEAAKKYRKR 139

The following BLAST results are available for this feature:

BLAST of Chy12G217970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82024	2.6e-14	35.14	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
Q8RB59	1.9e-04	47.27	30S ribosomal protein S21 OS=Caldanaerobacter subterraneus subsp. tengcongensis ...	[more]
Q7NHA1	3.2e-04	46.30	30S ribosomal protein S21 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 74...	[more]
B0CE36	3.2e-04	50.82	30S ribosomal protein S21 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ...	[more]
Q1WU25	4.2e-04	46.43	30S ribosomal protein S21 OS=Lactobacillus salivarius (strain UCC118) OX=362948 ...	[more]

BLAST of Chy12G217970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWJ6	3.9e-77	96.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1	[more]
E5GBW8	4.5e-73	92.22	Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV...	[more]
A0A1S3AZ70	4.5e-73	92.22	uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=...	[more]
A0A5A7UHJ6	4.0e-66	71.30	Ribosomal_S21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BJF5	4.0e-66	71.30	Putative Ribosomal protein S21 family protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Chy12G217970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152510.2	3.52e-100	96.43	30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN64376.1 hypotheti...	[more]
XP_008439325.1	7.61e-95	92.22	PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 struc...	[more]
KAA0055302.1	5.52e-85	71.30	Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa]	[more]
TYJ99226.1	5.52e-85	71.30	putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa]	[more]
XP_038894121.1	1.94e-81	83.13	30S ribosomal protein S21, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Chy12G217970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27160.1	9.0e-18	35.36	Ribosomal protein S21 family protein	[more]
AT5G63300.1	1.9e-12	39.81	Ribosomal protein S21 family protein	[more]
AT5G63300.2	6.9e-10	55.00	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 81..90 score: 35.0 coord: 73..81 score: 38.89 coord: 93..103 score: 44.7 coord: 105..115 score: 42.42
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 72..127 e-value: 1.8E-14 score: 51.3
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 72..125 e-value: 4.3E-16 score: 58.4
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 1..160
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 69..125 score: 14.464947
IPR038380	Ribosomal protein S21 superfamily	GENE3D	1.20.5.1150	Ribosomal protein S8	coord: 85..122 e-value: 5.2E-12 score: 47.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G217970.1	Chy12G217970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome